Wall clock time and date at job start Tue Mar 31 2020 01:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35982 * 117.00071 * 2 1 4 4 C 1.38723 * 120.00001 * 359.97438 * 3 2 1 5 5 C 1.38104 * 119.99814 * 179.97438 * 4 3 2 6 6 C 1.38725 * 120.00105 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99684 * 179.72430 * 6 5 4 8 8 C 1.42902 * 117.00267 * 359.97438 * 7 6 5 9 9 C 1.38673 * 119.99866 * 359.97438 * 6 5 4 10 10 C 1.50706 * 119.99592 * 179.97438 * 9 6 5 11 11 H 1.08996 * 109.47308 * 325.00190 * 10 9 6 12 12 C 1.53003 * 109.46781 * 85.00711 * 10 9 6 13 13 O 1.42901 * 109.47007 * 205.00165 * 10 9 6 14 14 C 1.42897 * 114.00147 * 150.00144 * 13 10 9 15 15 C 1.52996 * 109.47298 * 180.02562 * 14 13 10 16 16 C 1.50702 * 109.47131 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99793 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99928 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00142 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99915 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47046 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47230 * 120.00006 * 20 18 16 23 23 H 1.48498 * 109.47345 * 240.00145 * 20 18 16 24 24 C 1.38150 * 120.00115 * 0.03161 * 9 6 5 25 25 H 1.08997 * 109.47100 * 300.00148 * 1 2 3 26 26 H 1.09011 * 109.46913 * 59.99860 * 1 2 3 27 27 H 1.08997 * 109.47498 * 179.97438 * 1 2 3 28 28 H 1.07992 * 119.99717 * 359.97438 * 4 3 2 29 29 H 1.08000 * 120.00286 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.46809 * 300.00275 * 8 7 6 31 31 H 1.08997 * 109.46973 * 60.00370 * 8 7 6 32 32 H 1.08999 * 109.46876 * 180.02562 * 8 7 6 33 33 H 1.09003 * 109.46667 * 299.99446 * 12 10 9 34 34 H 1.08996 * 109.47624 * 59.99673 * 12 10 9 35 35 H 1.09001 * 109.46553 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.47075 * 300.00165 * 14 13 10 37 37 H 1.09003 * 109.46944 * 60.00003 * 14 13 10 38 38 H 1.09002 * 109.47025 * 299.99991 * 15 14 13 39 39 H 1.09003 * 109.47289 * 60.00009 * 15 14 13 40 40 H 0.96999 * 119.99789 * 179.97438 * 19 18 16 41 41 H 1.08006 * 119.99972 * 179.97438 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9179 3.6055 0.0000 6 6 3.3032 3.6781 0.0005 7 8 3.9205 4.8897 -0.0046 8 6 3.0806 6.0458 -0.0110 9 6 4.0584 2.5150 0.0011 10 6 5.5634 2.5940 0.0011 11 1 5.8822 3.4533 -0.5887 12 6 6.0660 2.7467 1.4381 13 8 6.1030 1.3993 -0.5678 14 6 7.3546 1.5855 -1.2317 15 6 7.8347 0.2483 -1.7994 16 6 9.1550 0.4446 -2.4991 17 1 9.6062 1.4251 -2.5355 18 6 9.7867 -0.6276 -3.0926 19 7 9.2369 -1.8215 -3.0486 20 14 11.4229 -0.3841 -3.9604 21 1 11.8240 1.0427 -3.8694 22 1 12.4572 -1.2307 -3.3134 23 1 11.2886 -0.7710 -5.3878 24 6 3.4312 1.2841 0.0004 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2124 2.3185 -0.0014 29 1 1.3297 4.5113 -0.0008 30 1 2.4523 6.0335 -0.9015 31 1 2.4505 6.0420 0.8784 32 1 3.6985 6.9438 -0.0151 33 1 5.6544 3.6580 1.8720 34 1 5.7472 1.8873 2.0279 35 1 7.1546 2.8033 1.4381 36 1 7.2319 2.3017 -2.0442 37 1 8.0898 1.9641 -0.5216 38 1 7.9573 -0.4682 -0.9872 39 1 7.0994 -0.1299 -2.5097 40 1 9.6813 -2.5757 -3.4665 41 1 4.0194 0.3783 0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205647697.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:48 Heat of formation + Delta-G solvation = -105.106928 kcal Electronic energy + Delta-G solvation = -21747.062729 eV Core-core repulsion = 18399.856469 eV Total energy + Delta-G solvation = -3347.206261 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57296 -39.00304 -37.76160 -36.14387 -33.41753 -32.27083 -30.23732 -29.62852 -28.79733 -27.44841 -26.95087 -24.67600 -23.46282 -22.05272 -20.76036 -20.68165 -18.10176 -17.57280 -16.99916 -16.36805 -15.93460 -15.59385 -15.33854 -14.85819 -14.79792 -14.67619 -14.40067 -14.03852 -13.29712 -13.05456 -12.88361 -12.54061 -12.42330 -12.27457 -12.17782 -11.84254 -11.73805 -11.59644 -11.19669 -10.98034 -10.78381 -10.50079 -10.46979 -10.29677 -10.24788 -9.43303 -9.12675 -8.94607 -8.72055 -8.30495 -7.70803 -5.98185 -4.01387 1.25758 1.47899 3.19464 3.33484 3.34577 3.40355 3.44542 3.71457 4.21353 4.51037 4.63429 4.79103 4.92273 4.98126 4.99470 5.02705 5.23007 5.24145 5.32424 5.35204 5.37916 5.45757 5.55153 5.61661 5.88645 5.94648 6.06296 6.17688 6.27149 6.32483 6.36023 6.45349 6.50521 6.67572 6.96858 7.25066 7.48194 7.62857 7.86434 7.89663 8.18586 8.42249 9.05544 9.62047 11.13521 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.003801 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.919325 B = 7364.302024 C = 8467.994430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.090 3.910 4 C -0.175 4.175 5 C -0.173 4.173 6 C 0.095 3.905 7 O -0.313 6.313 8 C 0.029 3.971 9 C -0.067 4.067 10 C 0.132 3.868 11 H 0.071 0.929 12 C -0.163 4.163 13 O -0.382 6.382 14 C 0.070 3.930 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.082 4.082 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.024 0.976 40 H 0.261 0.739 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.680 12.516 8.480 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.045 3.955 4 C -0.194 4.194 5 C -0.192 4.192 6 C 0.050 3.950 7 O -0.227 6.227 8 C -0.067 4.067 9 C -0.068 4.068 10 C 0.073 3.927 11 H 0.089 0.911 12 C -0.220 4.220 13 O -0.302 6.302 14 C -0.005 4.005 15 C -0.012 4.012 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.101 4.101 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.451 12.011 8.434 23.577 hybrid contribution 0.375 0.598 -0.562 0.902 sum -18.077 12.609 7.872 23.404 Atomic orbital electron populations 1.23000 0.78990 1.03738 1.00896 1.86129 1.20791 1.26666 1.89243 1.18921 0.92256 0.84130 1.00194 1.20943 0.99678 0.91725 1.07043 1.20858 0.92872 0.98229 1.07243 1.18614 0.90681 0.84947 1.00736 1.86105 1.35289 1.12099 1.89239 1.23007 0.95892 0.86774 1.00989 1.19034 0.95247 0.89852 1.02657 1.20531 0.88035 0.89593 0.94515 0.91097 1.22191 1.01620 1.01908 0.96320 1.87936 1.38654 1.30345 1.73277 1.22914 0.82353 1.01619 0.93650 1.19075 0.95641 0.90281 0.96228 1.21103 1.04991 0.94885 1.35035 0.92521 1.24992 0.97865 0.95150 0.96297 1.69998 1.38840 0.99617 1.44523 0.86487 0.83674 0.78225 0.79324 1.19709 1.20949 1.20953 1.20237 0.90877 0.98521 1.00458 0.93027 0.92941 0.88394 0.85500 0.85361 0.92901 0.92954 0.88391 0.92058 0.91961 0.91881 0.94700 0.94608 0.95697 0.95725 0.92959 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.31 10.50 -19.68 -0.21 -4.51 16 3 C 0.09 1.29 6.69 -39.24 -0.26 1.03 16 4 C -0.18 -2.08 9.03 -39.45 -0.36 -2.43 16 5 C -0.17 -2.03 9.03 -39.45 -0.36 -2.39 16 6 C 0.10 1.32 6.66 -39.24 -0.26 1.06 16 7 O -0.31 -4.00 9.63 -19.70 -0.19 -4.19 16 8 C 0.03 0.23 9.81 101.05 0.99 1.22 16 9 C -0.07 -1.08 5.08 -104.49 -0.53 -1.61 16 10 C 0.13 2.27 2.66 -27.88 -0.07 2.19 16 11 H 0.07 1.22 7.33 -51.93 -0.38 0.84 16 12 C -0.16 -2.45 9.51 37.16 0.35 -2.10 16 13 O -0.38 -8.04 8.82 -35.23 -0.31 -8.35 16 14 C 0.07 1.59 5.69 37.16 0.21 1.81 16 15 C 0.02 0.69 5.34 -27.88 -0.15 0.54 16 16 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 20 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C -0.08 -1.35 9.29 -39.45 -0.37 -1.72 16 25 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 26 H 0.05 0.40 7.66 -51.92 -0.40 0.00 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.13 1.14 6.29 -52.49 -0.33 0.81 16 29 H 0.13 1.12 6.29 -52.49 -0.33 0.79 16 30 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.94 7.87 -51.93 -0.41 0.53 16 36 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 37 H 0.04 0.77 7.87 -51.93 -0.41 0.37 16 38 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.15 2.67 7.35 -52.48 -0.39 2.28 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -33.14 342.88 -6.38 -39.52 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.33 Total: -2.86 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -0.22 Total: -15.02 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.74 Total: -26.63 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.71 Total: -17.06 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.14 -6.38 -39.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205647697.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.592 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds