Wall clock time and date at job start Tue Mar 31 2020 01:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35982 * 117.00071 * 2 1 4 4 C 1.38723 * 120.00001 * 359.97438 * 3 2 1 5 5 C 1.38104 * 119.99814 * 179.97438 * 4 3 2 6 6 C 1.38725 * 120.00105 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99684 * 179.72430 * 6 5 4 8 8 C 1.42902 * 117.00267 * 359.97438 * 7 6 5 9 9 C 1.38673 * 119.99866 * 359.97438 * 6 5 4 10 10 C 1.50706 * 119.99592 * 179.97438 * 9 6 5 11 11 H 1.08996 * 109.47308 * 325.00190 * 10 9 6 12 12 C 1.53003 * 109.46781 * 85.00711 * 10 9 6 13 13 O 1.42901 * 109.47007 * 205.00165 * 10 9 6 14 14 C 1.42897 * 114.00147 * 150.00144 * 13 10 9 15 15 C 1.52996 * 109.47298 * 180.02562 * 14 13 10 16 16 C 1.50702 * 109.47131 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99793 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99928 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00142 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99915 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47046 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47230 * 120.00006 * 20 18 16 23 23 H 1.48498 * 109.47345 * 240.00145 * 20 18 16 24 24 C 1.38150 * 120.00115 * 0.03161 * 9 6 5 25 25 H 1.08997 * 109.47100 * 300.00148 * 1 2 3 26 26 H 1.09011 * 109.46913 * 59.99860 * 1 2 3 27 27 H 1.08997 * 109.47498 * 179.97438 * 1 2 3 28 28 H 1.07992 * 119.99717 * 359.97438 * 4 3 2 29 29 H 1.08000 * 120.00286 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.46809 * 300.00275 * 8 7 6 31 31 H 1.08997 * 109.46973 * 60.00370 * 8 7 6 32 32 H 1.08999 * 109.46876 * 180.02562 * 8 7 6 33 33 H 1.09003 * 109.46667 * 299.99446 * 12 10 9 34 34 H 1.08996 * 109.47624 * 59.99673 * 12 10 9 35 35 H 1.09001 * 109.46553 * 179.97438 * 12 10 9 36 36 H 1.09002 * 109.47075 * 300.00165 * 14 13 10 37 37 H 1.09003 * 109.46944 * 60.00003 * 14 13 10 38 38 H 1.09002 * 109.47025 * 299.99991 * 15 14 13 39 39 H 1.09003 * 109.47289 * 60.00009 * 15 14 13 40 40 H 0.96999 * 119.99789 * 179.97438 * 19 18 16 41 41 H 1.08006 * 119.99972 * 179.97438 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9179 3.6055 0.0000 6 6 3.3032 3.6781 0.0005 7 8 3.9205 4.8897 -0.0046 8 6 3.0806 6.0458 -0.0110 9 6 4.0584 2.5150 0.0011 10 6 5.5634 2.5940 0.0011 11 1 5.8822 3.4533 -0.5887 12 6 6.0660 2.7467 1.4381 13 8 6.1030 1.3993 -0.5678 14 6 7.3546 1.5855 -1.2317 15 6 7.8347 0.2483 -1.7994 16 6 9.1550 0.4446 -2.4991 17 1 9.6062 1.4251 -2.5355 18 6 9.7867 -0.6276 -3.0926 19 7 9.2369 -1.8215 -3.0486 20 14 11.4229 -0.3841 -3.9604 21 1 11.8240 1.0427 -3.8694 22 1 12.4572 -1.2307 -3.3134 23 1 11.2886 -0.7710 -5.3878 24 6 3.4312 1.2841 0.0004 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2124 2.3185 -0.0014 29 1 1.3297 4.5113 -0.0008 30 1 2.4523 6.0335 -0.9015 31 1 2.4505 6.0420 0.8784 32 1 3.6985 6.9438 -0.0151 33 1 5.6544 3.6580 1.8720 34 1 5.7472 1.8873 2.0279 35 1 7.1546 2.8033 1.4381 36 1 7.2319 2.3017 -2.0442 37 1 8.0898 1.9641 -0.5216 38 1 7.9573 -0.4682 -0.9872 39 1 7.0994 -0.1299 -2.5097 40 1 9.6813 -2.5757 -3.4665 41 1 4.0194 0.3783 0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205647697.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:47 Heat of formation + Delta-G solvation = -126.363653 kcal Electronic energy + Delta-G solvation = -21747.984490 eV Core-core repulsion = 18399.856469 eV Total energy + Delta-G solvation = -3348.128021 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.57993 -39.94390 -39.22075 -37.22992 -35.46529 -33.75789 -31.66291 -31.15388 -29.94129 -28.19982 -27.72111 -26.72634 -24.68689 -23.23163 -22.66220 -21.83840 -19.12972 -18.71199 -18.45392 -17.94013 -16.86273 -16.81788 -16.58466 -16.40920 -16.34043 -15.88760 -15.64698 -15.17977 -14.54253 -14.37668 -14.24315 -13.94349 -13.67015 -13.52484 -13.30224 -13.12696 -12.88397 -12.83570 -12.55397 -12.42547 -12.38696 -12.26993 -11.91638 -11.58541 -11.41901 -11.32721 -11.31121 -10.68510 -10.43823 -9.90753 -8.70268 -8.23022 -6.36473 0.20274 0.44267 1.41070 1.42669 1.56282 2.34708 2.37656 2.49139 2.64970 2.84017 3.10655 3.68750 3.80197 4.08994 4.16555 4.22028 4.27892 4.30740 4.43050 4.43589 4.45679 4.46744 4.47819 4.55422 4.73167 4.75677 4.79417 4.84693 4.92452 4.97795 5.08262 5.22428 5.23665 5.31758 5.38507 5.57884 5.58657 5.74939 6.12367 6.36491 6.46105 6.56062 6.79416 7.33293 8.90436 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.003801 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.919325 B = 7364.302024 C = 8467.994430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.343 6.343 3 C 0.079 3.921 4 C -0.163 4.163 5 C -0.162 4.162 6 C 0.092 3.908 7 O -0.333 6.333 8 C 0.017 3.983 9 C -0.091 4.091 10 C 0.127 3.873 11 H 0.071 0.929 12 C -0.155 4.155 13 O -0.402 6.402 14 C 0.087 3.913 15 C 0.029 3.971 16 C -0.545 4.545 17 H 0.068 0.932 18 C -0.001 4.001 19 N -0.933 5.933 20 Si 0.976 3.024 21 H -0.258 1.258 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.113 4.113 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.164 0.836 29 H 0.167 0.833 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.041 0.959 37 H 0.048 0.952 38 H -0.005 1.005 39 H -0.009 1.009 40 H 0.266 0.734 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.839 15.139 8.500 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C 0.035 3.965 4 C -0.181 4.181 5 C -0.180 4.180 6 C 0.047 3.953 7 O -0.247 6.247 8 C -0.077 4.077 9 C -0.092 4.092 10 C 0.070 3.930 11 H 0.089 0.911 12 C -0.212 4.212 13 O -0.322 6.322 14 C 0.011 3.989 15 C -0.008 4.008 16 C -0.583 4.583 17 H 0.086 0.914 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.800 3.200 21 H -0.182 1.182 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.132 4.132 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.131 0.869 28 H 0.181 0.819 29 H 0.185 0.815 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.013 0.987 39 H 0.010 0.990 40 H 0.074 0.926 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.634 14.658 8.468 25.924 hybrid contribution 0.567 -0.192 -0.530 0.800 sum -19.067 14.466 7.937 25.215 Atomic orbital electron populations 1.23346 0.76375 1.05447 1.02420 1.86094 1.23607 1.26843 1.89278 1.18994 0.91686 0.85427 1.00435 1.21327 1.01303 0.90631 1.04851 1.21288 0.92111 0.99628 1.04974 1.18641 0.91437 0.84808 1.00391 1.86080 1.36955 1.12608 1.89060 1.23363 0.96416 0.85503 1.02410 1.18957 0.94449 0.90920 1.04851 1.20739 0.89278 0.87742 0.95263 0.91103 1.22126 1.01468 1.02654 0.94999 1.87912 1.37837 1.32949 1.73524 1.22502 0.83583 0.98616 0.94179 1.18928 0.95089 0.92198 0.94589 1.21497 1.05594 0.95642 1.35518 0.91403 1.26067 1.02316 0.94577 0.96893 1.70147 1.40932 1.00753 1.45405 0.85236 0.77997 0.78925 0.77873 1.18165 1.20131 1.20204 1.20073 0.92205 0.97653 1.03284 0.91114 0.91567 0.86869 0.81889 0.81516 0.91704 0.91123 0.86650 0.89883 0.92600 0.92043 0.94062 0.93379 0.98704 0.99034 0.92554 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -9.48 10.50 -93.35 -0.98 -10.46 16 3 C 0.08 2.28 6.69 22.49 0.15 2.43 16 4 C -0.16 -3.43 9.03 22.35 0.20 -3.23 16 5 C -0.16 -3.27 9.03 22.35 0.20 -3.07 16 6 C 0.09 2.44 6.66 22.49 0.15 2.59 16 7 O -0.33 -7.82 9.63 -93.39 -0.90 -8.72 16 8 C 0.02 0.22 9.81 113.37 1.11 1.33 16 9 C -0.09 -3.00 5.08 -19.78 -0.10 -3.10 16 10 C 0.13 4.53 2.66 29.85 0.08 4.61 16 11 H 0.07 2.47 7.33 -2.39 -0.02 2.46 16 12 C -0.16 -4.73 9.51 71.98 0.68 -4.04 16 13 O -0.40 -17.96 8.82 -148.98 -1.31 -19.27 16 14 C 0.09 4.11 5.69 71.98 0.41 4.52 16 15 C 0.03 1.70 5.34 29.85 0.16 1.86 16 16 C -0.54 -32.37 9.11 25.60 0.23 -32.14 16 17 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 18 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 19 N -0.93 -58.99 13.29 21.45 0.28 -58.70 16 20 Si 0.98 45.12 29.54 68.60 2.03 47.15 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 24 C -0.11 -3.95 9.29 22.35 0.21 -3.74 16 25 H 0.07 0.81 7.66 -2.39 -0.02 0.80 16 26 H 0.07 0.83 7.66 -2.38 -0.02 0.81 16 27 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.16 2.19 6.29 -2.91 -0.02 2.17 16 29 H 0.17 2.04 6.29 -2.91 -0.02 2.03 16 30 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 31 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 32 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.85 7.87 -2.39 -0.02 1.83 16 36 H 0.04 1.87 8.09 -2.39 -0.02 1.85 16 37 H 0.05 2.13 7.87 -2.39 -0.02 2.11 16 38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.12 4.66 7.35 -2.91 -0.02 4.64 16 Total: -1.00 -75.37 342.88 5.19 -70.18 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.01 Total: 9.98 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 5.06 Total: -30.15 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.28 Total: -58.70 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -3.19 Total: -38.46 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -75.37 5.19 -70.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205647697.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.182 kcal (2) G-P(sol) polarization free energy of solvation -75.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds