Wall clock time and date at job start Tue Mar 31 2020 01:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35980 * 117.00237 * 2 1 4 4 C 1.38718 * 119.99819 * 0.18532 * 3 2 1 5 5 C 1.38108 * 120.00163 * 180.23352 * 4 3 2 6 6 C 1.38722 * 119.99649 * 359.83640 * 5 4 3 7 7 O 1.35987 * 119.99879 * 179.97438 * 6 5 4 8 8 C 1.42903 * 116.99785 * 359.97438 * 7 6 5 9 9 C 1.38675 * 120.00043 * 359.95862 * 6 5 4 10 10 C 1.50708 * 120.00001 * 179.97438 * 9 6 5 11 11 H 1.09001 * 109.46642 * 35.02194 * 10 9 6 12 12 C 1.52998 * 109.46975 * 275.02051 * 10 9 6 13 13 O 1.42901 * 109.46976 * 155.01598 * 10 9 6 14 14 C 1.42901 * 113.99961 * 209.99616 * 13 10 9 15 15 C 1.52998 * 109.46786 * 180.02562 * 14 13 10 16 16 C 1.50709 * 109.46809 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99887 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99840 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00271 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99938 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47251 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47285 * 119.99943 * 20 18 16 23 23 H 1.48502 * 109.47190 * 240.00112 * 20 18 16 24 24 C 1.38153 * 120.00134 * 359.97438 * 9 6 5 25 25 H 1.08990 * 109.47316 * 59.99995 * 1 2 3 26 26 H 1.09000 * 109.46954 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46711 * 299.99515 * 1 2 3 28 28 H 1.07999 * 120.00037 * 0.04882 * 4 3 2 29 29 H 1.08001 * 120.00515 * 179.81296 * 5 4 3 30 30 H 1.09001 * 109.46371 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47054 * 299.99740 * 8 7 6 32 32 H 1.08995 * 109.46766 * 60.00219 * 8 7 6 33 33 H 1.08997 * 109.47450 * 60.00130 * 12 10 9 34 34 H 1.08998 * 109.46793 * 180.02562 * 12 10 9 35 35 H 1.08995 * 109.47127 * 299.99454 * 12 10 9 36 36 H 1.08991 * 109.47376 * 300.00554 * 14 13 10 37 37 H 1.09003 * 109.46588 * 60.00642 * 14 13 10 38 38 H 1.08997 * 109.47557 * 299.99911 * 15 14 13 39 39 H 1.09003 * 109.47174 * 60.00828 * 15 14 13 40 40 H 0.97003 * 119.99893 * 179.97438 * 19 18 16 41 41 H 1.08002 * 119.99805 * 179.97438 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0039 5 6 1.9178 3.6055 -0.0010 6 6 3.3032 3.6781 -0.0063 7 8 3.9205 4.8897 -0.0117 8 6 3.0805 6.0458 -0.0120 9 6 4.0584 2.5150 -0.0059 10 6 5.5634 2.5939 -0.0123 11 1 5.8845 3.4551 0.5736 12 6 6.0602 2.7423 -1.4518 13 8 6.1053 1.4009 0.5581 14 6 7.3596 1.5892 1.2163 15 6 7.8425 0.2535 1.7851 16 6 9.1651 0.4522 2.4798 17 1 9.6159 1.4331 2.5126 18 6 9.7996 -0.6183 3.0734 19 7 9.2505 -1.8127 3.0338 20 14 11.4386 -0.3720 3.9350 21 1 11.8385 1.0550 3.8397 22 1 11.3094 -0.7560 5.3637 23 1 12.4713 -1.2193 3.2862 24 6 3.4312 1.2841 0.0003 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.2124 2.3184 0.0077 29 1 1.3297 4.5113 -0.0010 30 1 3.6985 6.9437 -0.0160 31 1 2.4483 6.0353 -0.8999 32 1 2.4543 6.0401 0.8801 33 1 5.6469 3.6522 -1.8868 34 1 7.1487 2.7988 -1.4564 35 1 5.7390 1.8810 -2.0376 36 1 8.0918 1.9656 0.5021 37 1 7.2402 2.3079 2.0271 38 1 7.1104 -0.1233 2.4993 39 1 7.9621 -0.4649 0.9740 40 1 9.6972 -2.5659 3.4511 41 1 4.0195 0.3783 0.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205647699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:50 Heat of formation + Delta-G solvation = -105.097127 kcal Electronic energy + Delta-G solvation = -21746.570272 eV Core-core repulsion = 18399.364436 eV Total energy + Delta-G solvation = -3347.205836 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57323 -39.00343 -37.76137 -36.14389 -33.41760 -32.27094 -30.23749 -29.62848 -28.79763 -27.44873 -26.95128 -24.67614 -23.46302 -22.05275 -20.76066 -20.68162 -18.10169 -17.57288 -16.99899 -16.36786 -15.93508 -15.59421 -15.33905 -14.85824 -14.79795 -14.67599 -14.40072 -14.03818 -13.29697 -13.05514 -12.88345 -12.54100 -12.42326 -12.27432 -12.17837 -11.84312 -11.73811 -11.59666 -11.19619 -10.98051 -10.78378 -10.50107 -10.46978 -10.29708 -10.24765 -9.43311 -9.12666 -8.94566 -8.72097 -8.30526 -7.70841 -5.98179 -4.01386 1.25745 1.47900 3.19473 3.33484 3.34563 3.40348 3.44532 3.71446 4.21335 4.51034 4.63417 4.79099 4.92247 4.98146 4.99416 5.02701 5.23001 5.24128 5.32396 5.35173 5.37937 5.45744 5.55130 5.61657 5.88641 5.94660 6.06289 6.17672 6.27143 6.32522 6.36002 6.45353 6.50534 6.67571 6.96844 7.25040 7.48176 7.62862 7.86453 7.89656 8.18576 8.42222 9.05536 9.62058 11.13522 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018054 B = 0.003799 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.561946 B = 7367.865331 C = 8471.921548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.090 3.910 4 C -0.175 4.175 5 C -0.173 4.173 6 C 0.095 3.905 7 O -0.313 6.313 8 C 0.029 3.971 9 C -0.067 4.067 10 C 0.132 3.868 11 H 0.071 0.929 12 C -0.163 4.163 13 O -0.382 6.382 14 C 0.070 3.930 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.895 3.105 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.082 4.082 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.261 0.739 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.717 12.490 -8.471 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.045 3.955 4 C -0.194 4.194 5 C -0.192 4.192 6 C 0.050 3.950 7 O -0.227 6.227 8 C -0.067 4.067 9 C -0.068 4.068 10 C 0.073 3.927 11 H 0.089 0.911 12 C -0.220 4.220 13 O -0.302 6.302 14 C -0.005 4.005 15 C -0.012 4.012 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.101 4.101 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.488 11.986 -8.424 23.589 hybrid contribution 0.377 0.600 0.560 0.903 sum -18.111 12.586 -7.865 23.415 Atomic orbital electron populations 1.22998 0.78990 1.03738 1.00895 1.86129 1.20791 1.26667 1.89245 1.18919 0.92256 0.84130 1.00199 1.20944 0.99679 0.91726 1.07040 1.20859 0.92872 0.98229 1.07244 1.18615 0.90682 0.84944 1.00734 1.86106 1.35286 1.12098 1.89240 1.23008 0.95892 0.86775 1.00989 1.19036 0.95246 0.89852 1.02658 1.20531 0.88030 0.89630 0.94483 0.91104 1.22189 1.01639 1.01917 0.96292 1.87938 1.38389 1.30444 1.73441 1.22913 0.82279 1.01606 0.93737 1.19076 0.95625 0.90300 0.96225 1.21104 1.04836 0.94922 1.35156 0.92521 1.24990 0.97879 0.95148 0.96285 1.69997 1.38783 0.99654 1.44544 0.86489 0.83694 0.78227 0.79300 1.19709 1.20954 1.20950 1.20237 0.90875 0.98521 1.00455 0.93026 0.88394 0.92942 0.85500 0.85359 0.88391 0.92952 0.92902 0.92055 0.91881 0.91963 0.94611 0.94695 0.95727 0.95692 0.92958 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.31 10.50 -19.68 -0.21 -4.51 16 3 C 0.09 1.29 6.68 -39.24 -0.26 1.02 16 4 C -0.18 -2.08 9.03 -39.45 -0.36 -2.43 16 5 C -0.17 -2.03 9.03 -39.45 -0.36 -2.39 16 6 C 0.10 1.32 6.66 -39.24 -0.26 1.06 16 7 O -0.31 -4.00 9.63 -19.70 -0.19 -4.19 16 8 C 0.03 0.23 9.81 101.05 0.99 1.22 16 9 C -0.07 -1.08 5.08 -104.49 -0.53 -1.61 16 10 C 0.13 2.27 2.66 -27.88 -0.07 2.19 16 11 H 0.07 1.22 7.33 -51.93 -0.38 0.84 16 12 C -0.16 -2.45 9.51 37.16 0.35 -2.10 16 13 O -0.38 -8.04 8.82 -35.23 -0.31 -8.35 16 14 C 0.07 1.59 5.69 37.16 0.21 1.81 16 15 C 0.02 0.68 5.34 -27.88 -0.15 0.54 16 16 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 20 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C -0.08 -1.35 9.29 -39.45 -0.37 -1.72 16 25 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 28 H 0.13 1.14 6.29 -52.49 -0.33 0.81 16 29 H 0.13 1.12 6.29 -52.49 -0.33 0.79 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 32 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.94 7.87 -51.93 -0.41 0.53 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.77 7.87 -51.93 -0.41 0.36 16 37 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.15 2.67 7.35 -52.49 -0.39 2.28 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -33.14 342.88 -6.38 -39.51 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -6.33 Total: -2.87 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -0.22 Total: -15.02 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.74 Total: -26.63 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.71 Total: -17.06 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.14 -6.38 -39.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205647699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.583 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds