Wall clock time and date at job start Tue Mar 31 2020 01:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35980 * 117.00237 * 2 1 4 4 C 1.38718 * 119.99819 * 0.18532 * 3 2 1 5 5 C 1.38108 * 120.00163 * 180.23352 * 4 3 2 6 6 C 1.38722 * 119.99649 * 359.83640 * 5 4 3 7 7 O 1.35987 * 119.99879 * 179.97438 * 6 5 4 8 8 C 1.42903 * 116.99785 * 359.97438 * 7 6 5 9 9 C 1.38675 * 120.00043 * 359.95862 * 6 5 4 10 10 C 1.50708 * 120.00001 * 179.97438 * 9 6 5 11 11 H 1.09001 * 109.46642 * 35.02194 * 10 9 6 12 12 C 1.52998 * 109.46975 * 275.02051 * 10 9 6 13 13 O 1.42901 * 109.46976 * 155.01598 * 10 9 6 14 14 C 1.42901 * 113.99961 * 209.99616 * 13 10 9 15 15 C 1.52998 * 109.46786 * 180.02562 * 14 13 10 16 16 C 1.50709 * 109.46809 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99887 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99840 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00271 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99938 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47251 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47285 * 119.99943 * 20 18 16 23 23 H 1.48502 * 109.47190 * 240.00112 * 20 18 16 24 24 C 1.38153 * 120.00134 * 359.97438 * 9 6 5 25 25 H 1.08990 * 109.47316 * 59.99995 * 1 2 3 26 26 H 1.09000 * 109.46954 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46711 * 299.99515 * 1 2 3 28 28 H 1.07999 * 120.00037 * 0.04882 * 4 3 2 29 29 H 1.08001 * 120.00515 * 179.81296 * 5 4 3 30 30 H 1.09001 * 109.46371 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47054 * 299.99740 * 8 7 6 32 32 H 1.08995 * 109.46766 * 60.00219 * 8 7 6 33 33 H 1.08997 * 109.47450 * 60.00130 * 12 10 9 34 34 H 1.08998 * 109.46793 * 180.02562 * 12 10 9 35 35 H 1.08995 * 109.47127 * 299.99454 * 12 10 9 36 36 H 1.08991 * 109.47376 * 300.00554 * 14 13 10 37 37 H 1.09003 * 109.46588 * 60.00642 * 14 13 10 38 38 H 1.08997 * 109.47557 * 299.99911 * 15 14 13 39 39 H 1.09003 * 109.47174 * 60.00828 * 15 14 13 40 40 H 0.97003 * 119.99893 * 179.97438 * 19 18 16 41 41 H 1.08002 * 119.99805 * 179.97438 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0039 5 6 1.9178 3.6055 -0.0010 6 6 3.3032 3.6781 -0.0063 7 8 3.9205 4.8897 -0.0117 8 6 3.0805 6.0458 -0.0120 9 6 4.0584 2.5150 -0.0059 10 6 5.5634 2.5939 -0.0123 11 1 5.8845 3.4551 0.5736 12 6 6.0602 2.7423 -1.4518 13 8 6.1053 1.4009 0.5581 14 6 7.3596 1.5892 1.2163 15 6 7.8425 0.2535 1.7851 16 6 9.1651 0.4522 2.4798 17 1 9.6159 1.4331 2.5126 18 6 9.7996 -0.6183 3.0734 19 7 9.2505 -1.8127 3.0338 20 14 11.4386 -0.3720 3.9350 21 1 11.8385 1.0550 3.8397 22 1 11.3094 -0.7560 5.3637 23 1 12.4713 -1.2193 3.2862 24 6 3.4312 1.2841 0.0003 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.2124 2.3184 0.0077 29 1 1.3297 4.5113 -0.0010 30 1 3.6985 6.9437 -0.0160 31 1 2.4483 6.0353 -0.8999 32 1 2.4543 6.0401 0.8801 33 1 5.6469 3.6522 -1.8868 34 1 7.1487 2.7988 -1.4564 35 1 5.7390 1.8810 -2.0376 36 1 8.0918 1.9656 0.5021 37 1 7.2402 2.3079 2.0271 38 1 7.1104 -0.1233 2.4993 39 1 7.9621 -0.4649 0.9740 40 1 9.6972 -2.5659 3.4511 41 1 4.0195 0.3783 0.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205647699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:50 Heat of formation + Delta-G solvation = -126.353719 kcal Electronic energy + Delta-G solvation = -21747.492027 eV Core-core repulsion = 18399.364436 eV Total energy + Delta-G solvation = -3348.127591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57998 -39.94398 -39.22046 -37.22972 -35.46542 -33.75789 -31.66272 -31.15385 -29.94149 -28.19983 -27.72117 -26.72644 -24.68703 -23.23154 -22.66240 -21.83821 -19.12945 -18.71171 -18.45367 -17.93994 -16.86311 -16.81802 -16.58452 -16.40907 -16.34014 -15.88776 -15.64663 -15.17954 -14.54246 -14.37705 -14.24272 -13.94357 -13.66940 -13.52565 -13.30198 -13.12682 -12.88412 -12.83577 -12.55380 -12.42534 -12.38700 -12.27027 -11.91592 -11.58559 -11.41918 -11.32718 -11.31105 -10.68520 -10.43820 -9.90754 -8.70282 -8.23010 -6.36469 0.20273 0.44290 1.41059 1.42663 1.56266 2.34760 2.37657 2.49153 2.64962 2.84003 3.10676 3.68763 3.80213 4.08972 4.16553 4.22032 4.27903 4.30753 4.43109 4.43600 4.45697 4.46758 4.47841 4.55415 4.73182 4.75694 4.79416 4.84692 4.92444 4.97787 5.08251 5.22433 5.23675 5.31754 5.38519 5.57887 5.58688 5.74937 6.12350 6.36491 6.46087 6.56069 6.79407 7.33306 8.90442 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018054 B = 0.003799 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.561946 B = 7367.865331 C = 8471.921548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.343 6.343 3 C 0.079 3.921 4 C -0.163 4.163 5 C -0.162 4.162 6 C 0.092 3.908 7 O -0.333 6.333 8 C 0.017 3.983 9 C -0.091 4.091 10 C 0.127 3.873 11 H 0.071 0.929 12 C -0.155 4.155 13 O -0.402 6.402 14 C 0.087 3.913 15 C 0.029 3.971 16 C -0.545 4.545 17 H 0.068 0.932 18 C 0.000 4.000 19 N -0.933 5.933 20 Si 0.976 3.024 21 H -0.258 1.258 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.113 4.113 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.066 0.934 28 H 0.164 0.836 29 H 0.168 0.832 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.041 0.959 38 H -0.009 1.009 39 H -0.005 1.005 40 H 0.266 0.734 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.878 15.114 -8.496 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C 0.035 3.965 4 C -0.181 4.181 5 C -0.180 4.180 6 C 0.047 3.953 7 O -0.247 6.247 8 C -0.077 4.077 9 C -0.092 4.092 10 C 0.070 3.930 11 H 0.089 0.911 12 C -0.212 4.212 13 O -0.322 6.322 14 C 0.011 3.989 15 C -0.008 4.008 16 C -0.583 4.583 17 H 0.086 0.914 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.800 3.200 21 H -0.182 1.182 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.132 4.132 25 H 0.089 0.911 26 H 0.131 0.869 27 H 0.084 0.916 28 H 0.181 0.819 29 H 0.185 0.815 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.010 0.990 39 H 0.013 0.987 40 H 0.074 0.926 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.672 14.633 -8.464 25.937 hybrid contribution 0.570 -0.191 0.530 0.801 sum -19.102 14.442 -7.934 25.227 Atomic orbital electron populations 1.23344 0.76374 1.05447 1.02420 1.86093 1.23607 1.26844 1.89279 1.18991 0.91684 0.85427 1.00437 1.21328 1.01305 0.90633 1.04850 1.21289 0.92111 0.99628 1.04975 1.18641 0.91439 0.84805 1.00391 1.86082 1.36953 1.12607 1.89060 1.23364 0.96416 0.85503 1.02410 1.18960 0.94447 0.90920 1.04853 1.20739 0.89265 0.87784 0.95233 0.91110 1.22123 1.01492 1.02659 0.94970 1.87913 1.37568 1.33042 1.73700 1.22501 0.83509 0.98609 0.94259 1.18929 0.95088 0.92209 0.94581 1.21498 1.05440 0.95678 1.35637 0.91403 1.26065 1.02349 0.94578 0.96859 1.70146 1.40876 1.00792 1.45422 0.85237 0.77998 0.78926 0.77875 1.18164 1.20205 1.20130 1.20073 0.92205 0.97655 1.03283 0.91117 0.86869 0.91565 0.81888 0.81514 0.86650 0.91127 0.91698 0.89880 0.92043 0.92604 0.93384 0.94055 0.99037 0.98696 0.92554 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -9.48 10.50 -93.33 -0.98 -10.46 16 3 C 0.08 2.28 6.68 22.49 0.15 2.43 16 4 C -0.16 -3.43 9.03 22.35 0.20 -3.23 16 5 C -0.16 -3.27 9.03 22.35 0.20 -3.07 16 6 C 0.09 2.44 6.66 22.49 0.15 2.59 16 7 O -0.33 -7.82 9.63 -93.41 -0.90 -8.72 16 8 C 0.02 0.22 9.81 113.37 1.11 1.33 16 9 C -0.09 -3.00 5.08 -19.78 -0.10 -3.10 16 10 C 0.13 4.53 2.66 29.85 0.08 4.61 16 11 H 0.07 2.47 7.33 -2.39 -0.02 2.45 16 12 C -0.16 -4.73 9.51 71.98 0.68 -4.04 16 13 O -0.40 -17.96 8.82 -148.98 -1.31 -19.27 16 14 C 0.09 4.11 5.69 71.98 0.41 4.52 16 15 C 0.03 1.70 5.34 29.85 0.16 1.86 16 16 C -0.54 -32.37 9.11 25.60 0.23 -32.14 16 17 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 18 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 19 N -0.93 -58.98 13.29 21.45 0.28 -58.70 16 20 Si 0.98 45.12 29.54 68.60 2.03 47.14 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 24 C -0.11 -3.95 9.29 22.35 0.21 -3.74 16 25 H 0.07 0.81 7.67 -2.39 -0.02 0.79 16 26 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 0.83 7.65 -2.39 -0.02 0.81 16 28 H 0.16 2.19 6.29 -2.91 -0.02 2.17 16 29 H 0.17 2.04 6.29 -2.91 -0.02 2.03 16 30 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 32 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.06 1.85 7.87 -2.39 -0.02 1.83 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 2.12 7.87 -2.39 -0.02 2.11 16 37 H 0.04 1.87 8.09 -2.39 -0.02 1.86 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.12 4.66 7.35 -2.91 -0.02 4.64 16 Total: -1.00 -75.37 342.88 5.19 -70.18 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.01 Total: 9.98 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 5.06 Total: -30.15 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.28 Total: -58.70 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -3.19 Total: -38.45 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -75.37 5.19 -70.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205647699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.173 kcal (2) G-P(sol) polarization free energy of solvation -75.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds