Wall clock time and date at job start Tue Mar 31 2020 01:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35988 * 117.00304 * 2 1 4 4 C 1.38568 * 120.07156 * 0.02562 * 3 2 1 5 5 C 1.38237 * 120.00066 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.14678 * 359.95371 * 5 4 3 7 7 C 1.38238 * 120.14613 * 0.02562 * 6 5 4 8 8 C 1.38565 * 119.99937 * 0.02562 * 7 6 5 9 9 O 1.35994 * 120.07302 * 179.72955 * 8 7 6 10 10 C 1.42902 * 116.99966 * 359.97438 * 9 8 7 11 11 C 1.53000 * 109.47004 * 180.02562 * 10 9 8 12 12 H 1.08999 * 109.47081 * 185.00218 * 11 10 9 13 13 C 1.53008 * 109.47125 * 304.99793 * 11 10 9 14 14 O 1.42892 * 109.47536 * 64.99761 * 11 10 9 15 15 C 1.42907 * 114.00198 * 150.00124 * 14 11 10 16 16 C 1.53001 * 109.47266 * 180.02562 * 15 14 11 17 17 C 1.50700 * 109.46975 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00299 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99891 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99549 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00155 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46786 * 59.99796 * 21 19 17 23 23 H 1.48499 * 109.47199 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46974 * 300.00173 * 21 19 17 25 25 H 1.08999 * 109.47160 * 59.99918 * 1 2 3 26 26 H 1.09007 * 109.46912 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47042 * 300.00062 * 1 2 3 28 28 H 1.08001 * 120.00207 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.93337 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.92624 * 180.02562 * 6 5 4 31 31 H 1.08000 * 120.00544 * 180.02562 * 7 6 5 32 32 H 1.08998 * 109.46920 * 300.00344 * 10 9 8 33 33 H 1.08998 * 109.47006 * 60.00304 * 10 9 8 34 34 H 1.08999 * 109.46793 * 60.00249 * 13 11 10 35 35 H 1.09001 * 109.47485 * 180.02562 * 13 11 10 36 36 H 1.08998 * 109.46901 * 300.00720 * 13 11 10 37 37 H 1.09005 * 109.46825 * 299.99924 * 15 14 11 38 38 H 1.08999 * 109.47043 * 60.00063 * 15 14 11 39 39 H 1.08995 * 109.47345 * 300.00045 * 16 15 14 40 40 H 1.08999 * 109.47199 * 59.99962 * 16 15 14 41 41 H 0.97005 * 119.99696 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2933 2.3747 0.0005 5 6 1.9224 3.6056 0.0000 6 6 3.3030 3.6797 -0.0001 7 6 4.0603 2.5233 -0.0002 8 6 3.4360 1.2863 -0.0007 9 8 4.1795 0.1476 -0.0064 10 6 5.6003 0.3006 -0.0122 11 6 6.2618 -1.0790 -0.0186 12 1 7.3424 -0.9643 0.0666 13 6 5.7414 -1.8997 1.1632 14 8 5.9490 -1.7516 -1.2400 15 6 6.9600 -2.6619 -1.6777 16 6 6.5211 -3.3203 -2.9871 17 6 7.5869 -4.2807 -3.4483 18 1 8.4875 -4.4084 -2.8660 19 6 7.4129 -4.9957 -4.6144 20 7 6.3164 -4.8399 -5.3237 21 14 8.7343 -6.1856 -5.1865 22 1 8.9405 -7.2309 -4.1520 23 1 8.3082 -6.8248 -6.4573 24 1 10.0043 -5.4475 -5.4044 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2147 2.3197 0.0005 29 1 1.3344 4.5114 0.0000 30 1 3.7909 4.6433 -0.0001 31 1 5.1386 2.5838 0.0001 32 1 5.9027 0.8524 -0.9022 33 1 5.9104 0.8484 0.8777 34 1 4.6608 -2.0145 1.0780 35 1 6.2129 -2.8824 1.1589 36 1 5.9799 -1.3866 2.0948 37 1 7.8919 -2.1198 -1.8385 38 1 7.1120 -3.4287 -0.9181 39 1 5.5890 -3.8622 -2.8268 40 1 6.3694 -2.5533 -3.7466 41 1 6.1941 -5.3427 -6.1443 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205648337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:44 Heat of formation + Delta-G solvation = -104.585262 kcal Electronic energy + Delta-G solvation = -21488.545447 eV Core-core repulsion = 18141.361808 eV Total energy + Delta-G solvation = -3347.183640 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54476 -38.74608 -37.52417 -36.66886 -33.38008 -31.96450 -30.40710 -29.91433 -29.31854 -27.26770 -26.75887 -24.55107 -22.61595 -22.32700 -20.84092 -20.59121 -18.72720 -17.39761 -16.72339 -16.34118 -16.10159 -15.59917 -15.25323 -14.95872 -14.78329 -14.67598 -14.51081 -14.31845 -13.64562 -12.98663 -12.66866 -12.61880 -12.27663 -12.20960 -12.13040 -11.75982 -11.32225 -11.20871 -11.18775 -11.09177 -11.00041 -10.84157 -10.59922 -10.33662 -10.23087 -9.43581 -9.17118 -8.84750 -8.83617 -8.31893 -7.82611 -5.99363 -4.03210 1.18687 1.37378 3.23893 3.24732 3.34085 3.38183 3.40332 3.65157 4.20198 4.50690 4.66781 4.76566 4.87121 4.99298 5.04392 5.06853 5.12493 5.26004 5.30415 5.36231 5.38302 5.40482 5.43101 5.55313 5.72922 5.90935 6.06655 6.09353 6.16035 6.27044 6.36574 6.37516 6.53634 6.59532 6.93593 7.08508 7.58163 7.63355 7.84643 7.86648 8.16487 8.39856 9.03389 9.60066 11.12205 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.003178 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.719707 B = 8807.263453 C = 9211.906090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.301 6.301 3 C 0.097 3.903 4 C -0.175 4.175 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.179 4.179 8 C 0.110 3.890 9 O -0.285 6.285 10 C 0.063 3.937 11 C 0.087 3.913 12 H 0.073 0.927 13 C -0.171 4.171 14 O -0.375 6.375 15 C 0.067 3.933 16 C 0.026 3.974 17 C -0.525 4.525 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.051 0.949 28 H 0.132 0.868 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 16.665 14.295 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.214 6.214 3 C 0.052 3.948 4 C -0.194 4.194 5 C -0.144 4.144 6 C -0.136 4.136 7 C -0.197 4.197 8 C 0.064 3.936 9 O -0.198 6.198 10 C -0.012 4.012 11 C 0.029 3.971 12 H 0.091 0.909 13 C -0.229 4.229 14 O -0.295 6.295 15 C -0.009 4.009 16 C -0.011 4.011 17 C -0.563 4.563 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.529 5.529 21 Si 0.724 3.276 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.072 0.928 26 H 0.119 0.881 27 H 0.070 0.930 28 H 0.150 0.850 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.152 0.848 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.778 16.212 14.020 23.161 hybrid contribution 0.860 -0.360 -0.271 0.971 sum -7.918 15.852 13.749 22.428 Atomic orbital electron populations 1.23056 0.78832 1.04065 1.00844 1.86254 1.20755 1.25675 1.88758 1.18319 0.89309 0.85340 1.01855 1.21046 0.99827 0.91615 1.06912 1.20789 0.94562 0.96850 1.02199 1.20829 0.93743 0.97743 1.01293 1.21112 1.00509 0.91178 1.06950 1.18380 0.88514 0.86557 1.00188 1.86306 1.18219 1.27267 1.87975 1.23030 0.78883 0.98060 1.01248 1.22015 0.97323 0.90460 0.87351 0.90873 1.22200 1.03514 1.00362 0.96805 1.88089 1.45393 1.58410 1.37608 1.22944 0.89216 0.90153 0.98557 1.19051 0.97395 0.95166 0.89519 1.21023 1.03883 1.23672 1.07706 0.92644 1.25000 0.95715 0.97059 0.96525 1.69982 1.25866 1.41647 1.15407 0.86592 0.81861 0.81147 0.77994 1.20184 1.21195 1.20198 0.92801 0.88149 0.93003 0.85000 0.85867 0.85790 0.84832 0.91346 0.91346 0.90865 0.92194 0.92552 0.94782 0.94635 0.95670 0.95805 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.30 -4.45 10.28 -34.20 -0.35 -4.80 16 3 C 0.10 1.38 6.70 -39.12 -0.26 1.11 16 4 C -0.18 -1.92 9.04 -39.46 -0.36 -2.28 16 5 C -0.13 -1.23 10.04 -39.57 -0.40 -1.63 16 6 C -0.12 -1.19 10.04 -39.57 -0.40 -1.59 16 7 C -0.18 -2.13 9.04 -39.46 -0.36 -2.48 16 8 C 0.11 1.63 6.70 -39.12 -0.26 1.36 16 9 O -0.28 -4.75 9.01 -40.69 -0.37 -5.12 16 10 C 0.06 0.88 4.62 37.16 0.17 1.05 16 11 C 0.09 1.38 3.13 -26.73 -0.08 1.30 16 12 H 0.07 1.01 7.79 -51.93 -0.40 0.60 16 13 C -0.17 -2.51 9.33 37.16 0.35 -2.17 16 14 O -0.38 -8.00 9.95 -40.08 -0.40 -8.40 16 15 C 0.07 1.51 5.69 37.16 0.21 1.72 16 16 C 0.03 0.72 5.34 -27.88 -0.15 0.57 16 17 C -0.52 -15.25 9.11 -34.44 -0.31 -15.56 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 21 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 26 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.13 1.11 6.30 -52.49 -0.33 0.78 16 29 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 32 H 0.07 0.93 7.67 -51.93 -0.40 0.53 16 33 H 0.07 0.72 7.66 -51.93 -0.40 0.33 16 34 H 0.07 1.20 7.56 -51.93 -0.39 0.81 16 35 H 0.06 0.89 7.87 -51.93 -0.41 0.48 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 38 H 0.04 0.76 7.87 -51.93 -0.41 0.36 16 39 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -34.27 344.58 -7.53 -41.80 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -6.36 Total: -3.08 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -0.95 Total: -15.73 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.74 Total: -26.73 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -1.12 Total: -18.31 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.27 -7.53 -41.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205648337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.787 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds