Wall clock time and date at job start Tue Mar 31 2020 01:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35988 * 117.00304 * 2 1 4 4 C 1.38568 * 120.07156 * 0.02562 * 3 2 1 5 5 C 1.38237 * 120.00066 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.14678 * 359.95371 * 5 4 3 7 7 C 1.38238 * 120.14613 * 0.02562 * 6 5 4 8 8 C 1.38565 * 119.99937 * 0.02562 * 7 6 5 9 9 O 1.35994 * 120.07302 * 179.72955 * 8 7 6 10 10 C 1.42902 * 116.99966 * 359.97438 * 9 8 7 11 11 C 1.53000 * 109.47004 * 180.02562 * 10 9 8 12 12 H 1.08999 * 109.47081 * 185.00218 * 11 10 9 13 13 C 1.53008 * 109.47125 * 304.99793 * 11 10 9 14 14 O 1.42892 * 109.47536 * 64.99761 * 11 10 9 15 15 C 1.42907 * 114.00198 * 150.00124 * 14 11 10 16 16 C 1.53001 * 109.47266 * 180.02562 * 15 14 11 17 17 C 1.50700 * 109.46975 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00299 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99891 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99549 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00155 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46786 * 59.99796 * 21 19 17 23 23 H 1.48499 * 109.47199 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46974 * 300.00173 * 21 19 17 25 25 H 1.08999 * 109.47160 * 59.99918 * 1 2 3 26 26 H 1.09007 * 109.46912 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47042 * 300.00062 * 1 2 3 28 28 H 1.08001 * 120.00207 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.93337 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.92624 * 180.02562 * 6 5 4 31 31 H 1.08000 * 120.00544 * 180.02562 * 7 6 5 32 32 H 1.08998 * 109.46920 * 300.00344 * 10 9 8 33 33 H 1.08998 * 109.47006 * 60.00304 * 10 9 8 34 34 H 1.08999 * 109.46793 * 60.00249 * 13 11 10 35 35 H 1.09001 * 109.47485 * 180.02562 * 13 11 10 36 36 H 1.08998 * 109.46901 * 300.00720 * 13 11 10 37 37 H 1.09005 * 109.46825 * 299.99924 * 15 14 11 38 38 H 1.08999 * 109.47043 * 60.00063 * 15 14 11 39 39 H 1.08995 * 109.47345 * 300.00045 * 16 15 14 40 40 H 1.08999 * 109.47199 * 59.99962 * 16 15 14 41 41 H 0.97005 * 119.99696 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2933 2.3747 0.0005 5 6 1.9224 3.6056 0.0000 6 6 3.3030 3.6797 -0.0001 7 6 4.0603 2.5233 -0.0002 8 6 3.4360 1.2863 -0.0007 9 8 4.1795 0.1476 -0.0064 10 6 5.6003 0.3006 -0.0122 11 6 6.2618 -1.0790 -0.0186 12 1 7.3424 -0.9643 0.0666 13 6 5.7414 -1.8997 1.1632 14 8 5.9490 -1.7516 -1.2400 15 6 6.9600 -2.6619 -1.6777 16 6 6.5211 -3.3203 -2.9871 17 6 7.5869 -4.2807 -3.4483 18 1 8.4875 -4.4084 -2.8660 19 6 7.4129 -4.9957 -4.6144 20 7 6.3164 -4.8399 -5.3237 21 14 8.7343 -6.1856 -5.1865 22 1 8.9405 -7.2309 -4.1520 23 1 8.3082 -6.8248 -6.4573 24 1 10.0043 -5.4475 -5.4044 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2147 2.3197 0.0005 29 1 1.3344 4.5114 0.0000 30 1 3.7909 4.6433 -0.0001 31 1 5.1386 2.5838 0.0001 32 1 5.9027 0.8524 -0.9022 33 1 5.9104 0.8484 0.8777 34 1 4.6608 -2.0145 1.0780 35 1 6.2129 -2.8824 1.1589 36 1 5.9799 -1.3866 2.0948 37 1 7.8919 -2.1198 -1.8385 38 1 7.1120 -3.4287 -0.9181 39 1 5.5890 -3.8622 -2.8268 40 1 6.3694 -2.5533 -3.7466 41 1 6.1941 -5.3427 -6.1443 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205648337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:43 Heat of formation + Delta-G solvation = -126.145048 kcal Electronic energy + Delta-G solvation = -21489.480350 eV Core-core repulsion = 18141.361808 eV Total energy + Delta-G solvation = -3348.118542 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.47391 -39.87640 -38.83702 -37.67953 -35.47003 -33.46927 -31.47284 -31.25519 -30.66025 -28.05821 -27.86398 -26.62688 -23.60681 -23.22094 -22.86544 -21.74796 -19.67927 -18.76320 -18.22549 -17.56571 -17.25312 -16.83951 -16.61776 -16.49318 -16.10704 -15.72796 -15.63677 -15.56747 -14.73703 -14.34628 -14.21832 -13.99402 -13.57152 -13.48699 -13.11902 -12.97952 -12.89294 -12.79665 -12.44610 -12.32367 -12.09279 -12.03521 -11.96084 -11.81941 -11.79544 -11.42117 -11.35645 -10.65455 -10.37067 -9.69783 -8.76958 -8.23593 -6.37747 0.33421 0.49582 1.40245 1.45163 1.53129 2.26752 2.37329 2.42364 2.79338 2.86414 3.09765 3.74041 3.92046 3.98070 4.05216 4.11267 4.22776 4.27209 4.36863 4.38590 4.42754 4.45076 4.47111 4.52840 4.59502 4.71041 4.75497 4.79611 4.92053 4.97569 5.23870 5.32234 5.36240 5.38530 5.55309 5.56840 5.72574 5.80611 6.10222 6.17343 6.47651 6.69983 6.78513 7.32227 8.89542 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.003178 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.719707 B = 8807.263453 C = 9211.906090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.067 3.933 4 C -0.175 4.175 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.181 4.181 8 C 0.070 3.930 9 O -0.320 6.320 10 C 0.063 3.937 11 C 0.075 3.925 12 H 0.101 0.899 13 C -0.165 4.165 14 O -0.407 6.407 15 C 0.084 3.916 16 C 0.028 3.972 17 C -0.546 4.546 18 H 0.071 0.929 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.978 3.022 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.262 1.262 25 H 0.064 0.936 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.045 0.955 39 H -0.013 1.013 40 H -0.010 1.010 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 18.227 15.420 24.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.021 3.979 4 C -0.193 4.193 5 C -0.139 4.139 6 C -0.136 4.136 7 C -0.200 4.200 8 C 0.025 3.975 9 O -0.234 6.234 10 C -0.012 4.012 11 C 0.018 3.982 12 H 0.119 0.881 13 C -0.222 4.222 14 O -0.327 6.327 15 C 0.009 3.991 16 C -0.009 4.009 17 C -0.584 4.584 18 H 0.089 0.911 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.801 3.199 22 H -0.188 1.188 23 H -0.208 1.208 24 H -0.186 1.186 25 H 0.082 0.918 26 H 0.125 0.875 27 H 0.091 0.909 28 H 0.173 0.827 29 H 0.175 0.825 30 H 0.173 0.827 31 H 0.167 0.833 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.006 0.994 40 H 0.009 0.991 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.577 17.799 15.171 24.584 hybrid contribution 0.358 -0.719 -0.581 0.991 sum -7.219 17.080 14.590 23.594 Atomic orbital electron populations 1.23300 0.76765 1.05093 1.02306 1.86185 1.23207 1.26918 1.89260 1.18757 0.89697 0.86072 1.03337 1.21387 1.00968 0.91104 1.05889 1.21266 0.94926 0.97531 1.00199 1.21267 0.94087 0.98392 0.99855 1.21391 1.01545 0.90747 1.06329 1.18834 0.89030 0.87016 1.02639 1.86242 1.19313 1.29028 1.88863 1.23119 0.78166 0.96988 1.02908 1.22445 0.99381 0.91127 0.85257 0.88100 1.22137 1.01627 1.00456 0.97980 1.88042 1.45538 1.58615 1.40499 1.22526 0.89739 0.90828 0.96051 1.18923 0.95970 0.94300 0.91738 1.21456 1.04530 1.24061 1.08358 0.91132 1.26114 0.98338 0.99075 0.96521 1.70147 1.28323 1.42904 1.15977 0.85319 0.78579 0.78460 0.77573 1.18829 1.20807 1.18636 0.91766 0.87511 0.90946 0.82716 0.82512 0.82678 0.83320 0.91585 0.87558 0.93480 0.92690 0.89127 0.93013 0.93640 0.99438 0.99113 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.34 -10.62 10.28 -79.55 -0.82 -11.44 16 3 C 0.07 1.92 6.70 22.57 0.15 2.07 16 4 C -0.17 -3.62 9.04 22.35 0.20 -3.42 16 5 C -0.12 -2.04 10.04 22.27 0.22 -1.82 16 6 C -0.12 -2.08 10.04 22.27 0.22 -1.86 16 7 C -0.18 -4.11 9.04 22.35 0.20 -3.91 16 8 C 0.07 2.12 6.70 22.57 0.15 2.27 16 9 O -0.32 -11.09 9.01 -73.43 -0.66 -11.75 16 10 C 0.06 1.73 4.62 71.98 0.33 2.06 16 11 C 0.08 2.35 3.13 30.60 0.10 2.44 16 12 H 0.10 2.56 7.79 -2.39 -0.02 2.55 16 13 C -0.16 -4.77 9.33 71.98 0.67 -4.10 16 14 O -0.41 -17.84 9.95 -144.34 -1.44 -19.28 16 15 C 0.08 3.86 5.69 71.98 0.41 4.27 16 16 C 0.03 1.62 5.34 29.85 0.16 1.78 16 17 C -0.55 -32.22 9.11 25.60 0.23 -31.99 16 18 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 19 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 20 N -0.93 -59.29 13.29 21.45 0.28 -59.00 16 21 Si 0.98 44.81 29.54 68.60 2.03 46.84 16 22 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 H 0.06 1.05 7.66 -2.39 -0.02 1.03 16 26 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 28 H 0.16 2.30 6.30 -2.91 -0.02 2.28 16 29 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 30 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 31 H 0.15 2.71 6.30 -2.91 -0.02 2.70 16 32 H 0.07 1.79 7.67 -2.39 -0.02 1.77 16 33 H 0.11 2.03 7.66 -2.39 -0.02 2.01 16 34 H 0.05 1.60 7.56 -2.39 -0.02 1.58 16 35 H 0.05 1.61 7.87 -2.39 -0.02 1.59 16 36 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.05 2.16 8.09 -2.38 -0.02 2.14 16 38 H 0.05 1.96 7.87 -2.39 -0.02 1.94 16 39 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 40 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 41 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -78.54 344.58 5.02 -73.52 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.00 Total: 11.50 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 4.63 Total: -30.39 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.28 Total: -59.00 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -2.92 Total: -42.47 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -78.54 5.02 -73.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205648337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.627 kcal (2) G-P(sol) polarization free energy of solvation -78.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds