Wall clock time and date at job start Tue Mar 31 2020 01:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35998 * 116.99855 * 2 1 4 4 C 1.38561 * 120.07319 * 0.02562 * 3 2 1 5 5 C 1.38247 * 119.99934 * 180.02562 * 4 3 2 6 6 C 1.38250 * 120.14499 * 359.97358 * 5 4 3 7 7 C 1.50703 * 119.92833 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.47216 * 159.97998 * 7 6 5 9 9 C 1.53002 * 109.46696 * 279.98025 * 7 6 5 10 10 O 1.42902 * 109.46930 * 39.97422 * 7 6 5 11 11 C 1.42903 * 113.99751 * 150.00495 * 10 7 6 12 12 C 1.52999 * 109.47051 * 180.02562 * 11 10 7 13 13 C 1.50693 * 109.46952 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00558 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00074 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99986 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00059 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.46870 * 89.99925 * 17 15 13 19 19 H 1.48496 * 109.47022 * 209.99656 * 17 15 13 20 20 H 1.48491 * 109.47190 * 330.00003 * 17 15 13 21 21 C 1.38248 * 120.14883 * 0.02562 * 6 5 4 22 22 C 1.38561 * 119.99411 * 0.28021 * 21 6 5 23 23 O 1.36000 * 120.06648 * 179.71841 * 22 21 6 24 24 C 1.42891 * 117.00337 * 0.02562 * 23 22 21 25 25 H 1.08995 * 109.47131 * 59.99563 * 1 2 3 26 26 H 1.08999 * 109.46907 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46897 * 299.99968 * 1 2 3 28 28 H 1.07996 * 120.00247 * 0.03752 * 4 3 2 29 29 H 1.07994 * 119.92636 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.46903 * 179.97438 * 9 7 6 31 31 H 1.09005 * 109.47374 * 299.99341 * 9 7 6 32 32 H 1.08998 * 109.47771 * 59.99828 * 9 7 6 33 33 H 1.09003 * 109.46928 * 300.00019 * 11 10 7 34 34 H 1.09001 * 109.46843 * 59.99990 * 11 10 7 35 35 H 1.09003 * 109.47005 * 299.99647 * 12 11 10 36 36 H 1.08994 * 109.47377 * 59.99781 * 12 11 10 37 37 H 0.97000 * 119.99846 * 180.02562 * 16 15 13 38 38 H 1.08002 * 119.99888 * 179.97438 * 21 6 5 39 39 H 1.09007 * 109.47105 * 180.02562 * 24 23 22 40 40 H 1.09000 * 109.47014 * 299.99679 * 24 23 22 41 41 H 1.08999 * 109.47632 * 59.99864 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6058 0.0000 6 6 3.3029 3.6799 -0.0005 7 6 3.9837 5.0244 -0.0005 8 1 5.0093 4.9123 0.3509 9 6 3.9904 5.5925 -1.4211 10 8 3.2781 5.9155 0.8655 11 6 4.1045 6.9091 1.4754 12 6 3.2485 7.8015 2.3764 13 6 4.1198 8.8496 3.0191 14 1 5.1784 8.8763 2.8067 15 6 3.5659 9.7739 3.8793 16 7 2.2769 9.7411 4.1385 17 14 4.6462 11.0727 4.6766 18 1 4.6937 12.2773 3.8094 19 1 4.0844 11.4384 6.0016 20 1 6.0191 10.5348 4.8523 21 6 4.0603 2.5234 -0.0010 22 6 3.4359 1.2864 -0.0069 23 8 4.1796 0.1478 -0.0132 24 6 5.6003 0.3008 -0.0128 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2147 2.3197 0.0016 29 1 1.3342 4.5115 0.0008 30 1 4.4825 6.5652 -1.4211 31 1 4.5287 4.9128 -2.0818 32 1 2.9648 5.7046 -1.7726 33 1 4.8758 6.4232 2.0731 34 1 4.5734 7.5167 0.7015 35 1 2.4769 8.2874 1.7791 36 1 2.7798 7.1936 3.1503 37 1 1.8872 10.3916 4.7434 38 1 5.1386 2.5841 -0.0019 39 1 6.0716 -0.6821 -0.0187 40 1 5.9063 0.8552 -0.9000 41 1 5.9069 0.8458 0.8799 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205648895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:53 Heat of formation + Delta-G solvation = -105.834216 kcal Electronic energy + Delta-G solvation = -21518.831231 eV Core-core repulsion = 18171.593433 eV Total energy + Delta-G solvation = -3347.237798 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.62378 -38.51748 -38.23403 -36.42506 -33.37643 -32.01583 -30.36169 -29.70865 -29.00844 -27.36337 -27.06940 -24.69781 -23.32284 -22.17878 -20.82980 -20.76745 -18.48819 -17.24475 -16.86934 -16.36892 -16.14466 -15.34041 -15.31607 -15.13771 -14.80101 -14.75822 -14.53966 -14.40840 -13.28167 -13.07734 -12.82040 -12.60274 -12.35871 -12.26838 -12.22402 -11.86434 -11.56346 -11.29095 -11.17901 -11.06597 -11.05890 -10.86511 -10.57990 -10.36462 -10.29558 -9.49729 -9.20611 -8.92736 -8.69643 -8.36093 -7.76651 -6.03672 -4.07262 1.26165 1.45967 3.18468 3.19841 3.30284 3.36253 3.39331 3.69298 4.18973 4.46673 4.75935 4.85452 4.91389 4.99706 5.03294 5.04775 5.15448 5.30303 5.31834 5.32467 5.36942 5.37268 5.43971 5.48336 5.65846 5.77833 5.93563 6.16462 6.21589 6.27906 6.33689 6.42490 6.65357 6.68320 6.88567 6.96556 7.51437 7.55468 7.79000 7.82620 8.10868 8.35555 8.99326 9.56422 11.07956 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.003213 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.448398 B = 8713.618174 C = 9159.319754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.094 3.906 4 C -0.174 4.174 5 C -0.084 4.084 6 C -0.073 4.073 7 C 0.126 3.874 8 H 0.062 0.938 9 C -0.167 4.167 10 O -0.380 6.380 11 C 0.069 3.931 12 C 0.026 3.974 13 C -0.524 4.524 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.891 5.891 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.164 4.164 22 C 0.093 3.907 23 O -0.309 6.309 24 C 0.026 3.974 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.262 0.738 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 -18.707 -11.321 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.049 3.951 4 C -0.192 4.192 5 C -0.102 4.102 6 C -0.074 4.074 7 C 0.067 3.933 8 H 0.080 0.920 9 C -0.224 4.224 10 O -0.300 6.300 11 C -0.006 4.006 12 C -0.011 4.011 13 C -0.562 4.562 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.530 5.530 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.183 4.183 22 C 0.048 3.952 23 O -0.223 6.223 24 C -0.069 4.069 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.152 0.848 29 H 0.154 0.846 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.151 0.849 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.959 -19.021 -11.179 22.083 hybrid contribution 0.793 1.130 0.480 1.462 sum 1.752 -17.891 -10.698 20.919 Atomic orbital electron populations 1.23043 0.78768 1.03692 1.01351 1.86138 1.20864 1.26111 1.89273 1.18232 0.89072 0.85133 1.02708 1.21097 0.99939 0.91421 1.06779 1.20800 0.94073 0.97260 0.98070 1.19565 0.93870 0.93635 1.00327 1.20694 0.94582 0.86908 0.91078 0.92004 1.22250 1.02876 1.01202 0.96089 1.87980 1.36089 1.44334 1.61574 1.22931 0.94213 0.88564 0.94935 1.19060 0.95331 0.93002 0.93736 1.21052 0.94638 1.13590 1.26941 0.92584 1.24995 0.95042 0.97743 0.96502 1.69981 1.10793 1.36127 1.36051 0.86533 0.80572 0.81780 0.78752 1.20577 1.21118 1.19834 1.20852 1.00121 0.90471 1.06871 1.18091 0.88160 0.85818 1.03096 1.86143 1.18478 1.28307 1.89366 1.23044 0.78903 1.03619 1.01331 0.92783 0.88442 0.92621 0.84756 0.84638 0.91868 0.92236 0.91721 0.94714 0.94622 0.95746 0.95750 0.92853 0.84870 0.88397 0.92811 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.07 10.28 -34.23 -0.35 -4.42 16 3 C 0.09 1.31 6.70 -39.12 -0.26 1.05 16 4 C -0.17 -2.27 9.04 -39.46 -0.36 -2.63 16 5 C -0.08 -1.23 9.35 -39.57 -0.37 -1.59 16 6 C -0.07 -1.09 4.97 -104.61 -0.52 -1.61 16 7 C 0.13 1.96 2.92 -27.88 -0.08 1.88 16 8 H 0.06 0.90 7.64 -51.93 -0.40 0.51 16 9 C -0.17 -2.24 9.50 37.16 0.35 -1.89 16 10 O -0.38 -7.59 9.30 -35.23 -0.33 -7.91 16 11 C 0.07 1.50 5.69 37.16 0.21 1.72 16 12 C 0.03 0.69 5.34 -27.89 -0.15 0.54 16 13 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 17 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.16 -2.19 8.66 -39.46 -0.34 -2.53 16 22 C 0.09 1.31 6.70 -39.12 -0.26 1.05 16 23 O -0.31 -4.07 10.28 -34.24 -0.35 -4.43 16 24 C 0.03 0.23 9.81 101.05 0.99 1.22 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 28 H 0.13 1.41 6.30 -52.49 -0.33 1.08 16 29 H 0.14 2.02 7.77 -52.49 -0.41 1.61 16 30 H 0.06 0.86 7.87 -51.93 -0.41 0.45 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.03 0.73 8.09 -51.93 -0.42 0.31 16 34 H 0.04 0.74 7.87 -51.93 -0.41 0.33 16 35 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.13 1.46 6.28 -52.49 -0.33 1.13 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 41 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 LS Contribution 344.44 15.07 5.19 5.19 Total: -1.00 -32.98 344.44 -6.70 -39.69 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -6.37 Total: -3.25 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -0.21 Total: -15.21 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -1.03 Total: -16.76 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.98 -6.70 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205648895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.148 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds