Wall clock time and date at job start Tue Mar 31 2020 01:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35998 * 116.99855 * 2 1 4 4 C 1.38561 * 120.07319 * 0.02562 * 3 2 1 5 5 C 1.38247 * 119.99934 * 180.02562 * 4 3 2 6 6 C 1.38250 * 120.14499 * 359.97358 * 5 4 3 7 7 C 1.50703 * 119.92833 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.47216 * 159.97998 * 7 6 5 9 9 C 1.53002 * 109.46696 * 279.98025 * 7 6 5 10 10 O 1.42902 * 109.46930 * 39.97422 * 7 6 5 11 11 C 1.42903 * 113.99751 * 150.00495 * 10 7 6 12 12 C 1.52999 * 109.47051 * 180.02562 * 11 10 7 13 13 C 1.50693 * 109.46952 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00558 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00074 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99986 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00059 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.46870 * 89.99925 * 17 15 13 19 19 H 1.48496 * 109.47022 * 209.99656 * 17 15 13 20 20 H 1.48491 * 109.47190 * 330.00003 * 17 15 13 21 21 C 1.38248 * 120.14883 * 0.02562 * 6 5 4 22 22 C 1.38561 * 119.99411 * 0.28021 * 21 6 5 23 23 O 1.36000 * 120.06648 * 179.71841 * 22 21 6 24 24 C 1.42891 * 117.00337 * 0.02562 * 23 22 21 25 25 H 1.08995 * 109.47131 * 59.99563 * 1 2 3 26 26 H 1.08999 * 109.46907 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46897 * 299.99968 * 1 2 3 28 28 H 1.07996 * 120.00247 * 0.03752 * 4 3 2 29 29 H 1.07994 * 119.92636 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.46903 * 179.97438 * 9 7 6 31 31 H 1.09005 * 109.47374 * 299.99341 * 9 7 6 32 32 H 1.08998 * 109.47771 * 59.99828 * 9 7 6 33 33 H 1.09003 * 109.46928 * 300.00019 * 11 10 7 34 34 H 1.09001 * 109.46843 * 59.99990 * 11 10 7 35 35 H 1.09003 * 109.47005 * 299.99647 * 12 11 10 36 36 H 1.08994 * 109.47377 * 59.99781 * 12 11 10 37 37 H 0.97000 * 119.99846 * 180.02562 * 16 15 13 38 38 H 1.08002 * 119.99888 * 179.97438 * 21 6 5 39 39 H 1.09007 * 109.47105 * 180.02562 * 24 23 22 40 40 H 1.09000 * 109.47014 * 299.99679 * 24 23 22 41 41 H 1.08999 * 109.47632 * 59.99864 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6058 0.0000 6 6 3.3029 3.6799 -0.0005 7 6 3.9837 5.0244 -0.0005 8 1 5.0093 4.9123 0.3509 9 6 3.9904 5.5925 -1.4211 10 8 3.2781 5.9155 0.8655 11 6 4.1045 6.9091 1.4754 12 6 3.2485 7.8015 2.3764 13 6 4.1198 8.8496 3.0191 14 1 5.1784 8.8763 2.8067 15 6 3.5659 9.7739 3.8793 16 7 2.2769 9.7411 4.1385 17 14 4.6462 11.0727 4.6766 18 1 4.6937 12.2773 3.8094 19 1 4.0844 11.4384 6.0016 20 1 6.0191 10.5348 4.8523 21 6 4.0603 2.5234 -0.0010 22 6 3.4359 1.2864 -0.0069 23 8 4.1796 0.1478 -0.0132 24 6 5.6003 0.3008 -0.0128 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2147 2.3197 0.0016 29 1 1.3342 4.5115 0.0008 30 1 4.4825 6.5652 -1.4211 31 1 4.5287 4.9128 -2.0818 32 1 2.9648 5.7046 -1.7726 33 1 4.8758 6.4232 2.0731 34 1 4.5734 7.5167 0.7015 35 1 2.4769 8.2874 1.7791 36 1 2.7798 7.1936 3.1503 37 1 1.8872 10.3916 4.7434 38 1 5.1386 2.5841 -0.0019 39 1 6.0716 -0.6821 -0.0187 40 1 5.9063 0.8552 -0.9000 41 1 5.9069 0.8458 0.8799 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205648895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:52 Heat of formation + Delta-G solvation = -125.924819 kcal Electronic energy + Delta-G solvation = -21519.702425 eV Core-core repulsion = 18171.593433 eV Total energy + Delta-G solvation = -3348.108992 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.61176 -39.58006 -39.38038 -37.64138 -35.41036 -33.41680 -31.59104 -31.26456 -30.11812 -28.07007 -27.96841 -26.67940 -24.48198 -23.27472 -22.67583 -21.89041 -19.46649 -18.72768 -18.06135 -17.85575 -17.03476 -16.74483 -16.64362 -16.40302 -16.13931 -16.07955 -15.71033 -15.37916 -14.54232 -14.36180 -14.29168 -13.94481 -13.65229 -13.47980 -13.12549 -13.02587 -12.88641 -12.85965 -12.49983 -12.35849 -12.21666 -12.08955 -12.06688 -11.79296 -11.67396 -11.42647 -11.32878 -10.65646 -10.38365 -9.72550 -8.79597 -8.22971 -6.36013 0.22839 0.38449 1.41424 1.43722 1.54821 2.31939 2.34828 2.38299 2.61517 2.92308 3.10972 3.73576 3.81250 4.04716 4.14661 4.19053 4.26807 4.38502 4.40687 4.42034 4.43595 4.47978 4.48427 4.49993 4.66524 4.72899 4.74701 4.76213 4.89587 4.94428 5.11979 5.24997 5.30760 5.37414 5.55653 5.59964 5.63979 5.75646 6.08589 6.13092 6.47546 6.59140 6.80217 7.33787 8.90039 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.003213 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.448398 B = 8713.618174 C = 9159.319754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.083 3.917 4 C -0.171 4.171 5 C -0.102 4.102 6 C -0.088 4.088 7 C 0.120 3.880 8 H 0.076 0.924 9 C -0.161 4.161 10 O -0.401 6.401 11 C 0.086 3.914 12 C 0.029 3.971 13 C -0.545 4.545 14 H 0.068 0.932 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.974 3.026 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.260 1.260 21 C -0.161 4.161 22 C 0.084 3.916 23 O -0.327 6.327 24 C 0.016 3.984 25 H 0.066 0.934 26 H 0.120 0.880 27 H 0.060 0.940 28 H 0.156 0.844 29 H 0.124 0.876 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.049 0.951 35 H -0.005 1.005 36 H -0.009 1.009 37 H 0.265 0.735 38 H 0.157 0.843 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.966 -19.251 -11.793 22.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.038 3.962 4 C -0.190 4.190 5 C -0.120 4.120 6 C -0.089 4.089 7 C 0.063 3.937 8 H 0.094 0.906 9 C -0.219 4.219 10 O -0.321 6.321 11 C 0.011 3.989 12 C -0.008 4.008 13 C -0.583 4.583 14 H 0.086 0.914 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.797 3.203 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.184 1.184 21 C -0.179 4.179 22 C 0.038 3.962 23 O -0.241 6.241 24 C -0.078 4.078 25 H 0.084 0.916 26 H 0.138 0.862 27 H 0.079 0.921 28 H 0.173 0.827 29 H 0.142 0.858 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.013 0.987 36 H 0.010 0.990 37 H 0.074 0.926 38 H 0.174 0.826 39 H 0.138 0.862 40 H 0.085 0.915 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.661 -19.586 -11.671 22.954 hybrid contribution 0.204 1.150 0.589 1.308 sum 2.865 -18.437 -11.081 21.700 Atomic orbital electron populations 1.23350 0.76640 1.05565 1.02165 1.86116 1.23156 1.25795 1.89143 1.18476 0.89573 0.85646 1.02538 1.21257 1.01055 0.90643 1.06003 1.20833 0.94362 0.97498 0.99310 1.19584 0.94043 0.93679 1.01554 1.20961 0.94904 0.86536 0.91332 0.90644 1.22211 1.02911 1.01607 0.95147 1.87937 1.36910 1.44686 1.62585 1.22503 0.93094 0.88674 0.94666 1.18919 0.95225 0.93305 0.93397 1.21480 0.95388 1.14120 1.27281 0.91373 1.26046 0.96497 1.00271 0.97035 1.70129 1.12949 1.37292 1.36826 0.85320 0.78849 0.78539 0.77561 1.19527 1.20761 1.18359 1.21002 1.01179 0.89654 1.06089 1.18321 0.88610 0.86352 1.02892 1.86126 1.20574 1.28177 1.89231 1.23359 0.76786 1.05464 1.02195 0.91583 0.86156 0.92135 0.82663 0.85816 0.92081 0.89591 0.92378 0.93839 0.93295 0.98703 0.99039 0.92590 0.82594 0.86171 0.91460 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.31 10.28 -79.67 -0.82 -9.13 16 3 C 0.08 2.27 6.70 22.57 0.15 2.42 16 4 C -0.17 -4.42 9.04 22.35 0.20 -4.22 16 5 C -0.10 -3.00 9.35 22.27 0.21 -2.79 16 6 C -0.09 -2.56 4.97 -19.86 -0.10 -2.66 16 7 C 0.12 3.64 2.92 29.85 0.09 3.72 16 8 H 0.08 2.06 7.64 -2.39 -0.02 2.05 16 9 C -0.16 -4.13 9.50 71.98 0.68 -3.44 16 10 O -0.40 -16.18 9.30 -148.98 -1.39 -17.57 16 11 C 0.09 3.77 5.69 71.98 0.41 4.18 16 12 C 0.03 1.60 5.34 29.85 0.16 1.76 16 13 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 14 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 15 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 16 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 17 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 C -0.16 -4.07 8.66 22.35 0.19 -3.88 16 22 C 0.08 2.27 6.70 22.57 0.15 2.42 16 23 O -0.33 -8.18 10.28 -79.69 -0.82 -9.00 16 24 C 0.02 0.25 9.81 113.37 1.11 1.36 16 25 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 26 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 0.89 7.66 -2.39 -0.02 0.87 16 28 H 0.16 3.15 6.30 -2.91 -0.02 3.13 16 29 H 0.12 3.86 7.77 -2.91 -0.02 3.83 16 30 H 0.06 1.57 7.87 -2.39 -0.02 1.55 16 31 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.04 1.80 8.09 -2.39 -0.02 1.78 16 34 H 0.05 1.99 7.87 -2.39 -0.02 1.97 16 35 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 36 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.16 3.06 6.28 -2.91 -0.02 3.05 16 39 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 41 H 0.06 0.86 7.66 -2.39 -0.02 0.85 16 Total: -1.00 -72.05 344.44 5.36 -66.70 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.00 Total: 10.61 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 5.07 Total: -30.32 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.28 Total: -57.28 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -3.02 Total: -35.70 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -72.05 5.36 -66.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205648895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.229 kcal (2) G-P(sol) polarization free energy of solvation -72.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds