Wall clock time and date at job start Tue Mar 31 2020 01:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35991 * 116.99994 * 2 1 4 4 C 1.38699 * 119.99942 * 180.02562 * 3 2 1 5 5 C 1.38131 * 119.99543 * 180.02562 * 4 3 2 6 6 C 1.38694 * 120.00461 * 359.97438 * 5 4 3 7 7 O 1.35979 * 120.00238 * 179.97438 * 6 5 4 8 8 C 1.42906 * 116.99937 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46919 * 179.97438 * 8 7 6 10 10 H 1.08993 * 109.46984 * 185.00030 * 9 8 7 11 11 C 1.53002 * 109.47517 * 305.00565 * 9 8 7 12 12 O 1.42902 * 109.46922 * 65.00622 * 9 8 7 13 13 C 1.42898 * 114.00186 * 149.99499 * 12 9 8 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 9 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 C 1.38708 * 119.99715 * 0.24959 * 6 5 4 24 24 C 1.38130 * 119.99898 * 359.49604 * 23 6 5 25 25 H 1.08994 * 109.47276 * 300.00100 * 1 2 3 26 26 H 1.09003 * 109.46904 * 60.00415 * 1 2 3 27 27 H 1.09001 * 109.46887 * 179.97438 * 1 2 3 28 28 H 1.07994 * 119.99824 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.99302 * 179.97438 * 5 4 3 30 30 H 1.09005 * 109.46586 * 60.00657 * 8 7 6 31 31 H 1.08994 * 109.47420 * 300.00180 * 8 7 6 32 32 H 1.08997 * 109.46833 * 60.00170 * 11 9 8 33 33 H 1.09001 * 109.46890 * 179.97438 * 11 9 8 34 34 H 1.09000 * 109.46986 * 299.99733 * 11 9 8 35 35 H 1.09002 * 109.47259 * 300.00293 * 13 12 9 36 36 H 1.09001 * 109.47074 * 60.00315 * 13 12 9 37 37 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 38 38 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 39 39 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 40 40 H 1.08000 * 119.99932 * 179.72765 * 23 6 5 41 41 H 1.07998 * 119.99957 * 180.22449 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4314 1.2843 -0.0005 5 6 4.0585 2.5151 0.0000 6 6 3.3031 3.6783 0.0005 7 8 3.9204 4.8898 0.0016 8 6 3.0803 6.0459 0.0015 9 6 3.9476 7.3064 0.0034 10 1 3.3100 8.1859 0.0929 11 6 4.9171 7.2568 1.1860 12 8 4.6879 7.3771 -1.2168 13 6 4.9745 8.7094 -1.6465 14 6 5.7654 8.6642 -2.9554 15 6 6.0682 10.0693 -3.4083 16 1 5.7306 10.9104 -2.8210 17 6 6.7770 10.2810 -4.5718 18 7 7.1885 9.2566 -5.2867 19 14 7.1517 12.0227 -5.1335 20 1 6.5825 12.9896 -4.1608 21 1 8.6225 12.2109 -5.2149 22 1 6.5486 12.2520 -6.4709 23 6 1.9179 3.6056 0.0058 24 6 1.2909 2.3749 -0.0001 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0196 0.3785 -0.0005 29 1 5.1370 2.5715 0.0000 30 1 2.4505 6.0374 0.8912 31 1 2.4517 6.0383 -0.8889 32 1 5.5547 6.3773 1.0963 33 1 5.5352 8.1546 1.1870 34 1 4.3524 7.2029 2.1168 35 1 4.0406 9.2488 -1.8052 36 1 5.5631 9.2186 -0.8834 37 1 6.6992 8.1247 -2.7972 38 1 5.1766 8.1552 -3.7184 39 1 7.6876 9.4055 -6.1050 40 1 1.3297 4.5113 0.0106 41 1 0.2124 2.3183 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205649182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:49 Heat of formation + Delta-G solvation = -107.240803 kcal Electronic energy + Delta-G solvation = -21016.309655 eV Core-core repulsion = 17669.010862 eV Total energy + Delta-G solvation = -3347.298792 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49943 -39.19788 -37.68104 -36.25649 -33.39683 -31.95289 -31.29821 -29.57884 -29.24052 -27.31381 -26.76812 -24.59406 -22.97389 -22.08912 -20.88042 -20.71891 -18.59754 -17.80017 -16.85806 -16.41279 -16.03177 -15.82272 -15.30491 -14.99750 -14.88525 -14.58911 -14.41055 -13.99562 -13.50332 -13.38319 -12.85419 -12.71210 -12.60852 -12.30069 -12.23983 -11.95266 -11.70678 -11.47011 -11.15353 -11.03046 -10.81994 -10.59490 -10.48470 -10.37756 -10.27227 -9.47019 -9.20447 -9.17763 -8.89174 -8.35345 -7.80109 -6.02420 -4.06190 1.12763 1.38178 3.07741 3.29192 3.30101 3.37021 3.40771 3.63092 4.15104 4.47632 4.56399 4.64309 4.81660 4.87116 4.91672 5.03415 5.08506 5.17422 5.25764 5.30209 5.33533 5.36606 5.41637 5.65348 5.74724 5.84478 5.94493 6.02583 6.13598 6.21594 6.24157 6.31762 6.43742 6.50496 6.89504 7.15713 7.46717 7.57049 7.80663 7.83237 8.12106 8.36604 9.00817 9.57479 11.09253 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.029106 B = 0.002653 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.754175 B =10550.454322 C =10971.371897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.080 3.920 4 C -0.110 4.110 5 C -0.113 4.113 6 C 0.105 3.895 7 O -0.296 6.296 8 C 0.065 3.935 9 C 0.086 3.914 10 H 0.074 0.926 11 C -0.171 4.171 12 O -0.376 6.376 13 C 0.067 3.933 14 C 0.025 3.975 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.896 3.104 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.174 4.174 24 C -0.167 4.167 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.034 0.966 36 H 0.036 0.964 37 H 0.025 0.975 38 H 0.024 0.976 39 H 0.261 0.739 40 H 0.130 0.870 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.774 -14.782 14.244 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.036 3.964 4 C -0.128 4.128 5 C -0.132 4.132 6 C 0.059 3.941 7 O -0.209 6.209 8 C -0.010 4.010 9 C 0.027 3.973 10 H 0.091 0.909 11 C -0.229 4.229 12 O -0.296 6.296 13 C -0.009 4.009 14 C -0.012 4.012 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.529 5.529 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.193 4.193 24 C -0.186 4.186 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.148 0.852 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.329 -15.115 13.977 24.525 hybrid contribution -0.419 1.429 -0.282 1.515 sum -13.748 -13.686 13.695 23.746 Atomic orbital electron populations 1.23004 0.78780 1.03695 1.01188 1.86061 1.21021 1.26847 1.89530 1.18877 0.92321 0.84102 1.01117 1.20223 0.91271 0.97857 1.03488 1.20300 1.00540 0.88980 1.03367 1.19004 0.90911 0.86164 0.97979 1.86213 1.35072 1.11403 1.88214 1.22996 0.93018 0.83757 1.01249 1.22030 0.93289 0.94595 0.87345 0.90865 1.22199 1.00391 1.03422 0.96854 1.88076 1.74133 1.29611 1.37774 1.22949 0.98171 0.81095 0.98658 1.19064 0.95262 0.97348 0.89534 1.21089 1.35444 0.91892 1.07729 0.92532 1.25007 0.95704 0.97135 0.96516 1.69999 1.37690 1.29860 1.15357 0.86474 0.78067 0.84497 0.78586 1.19727 1.20905 1.20921 1.21071 0.93517 0.98358 1.06379 1.20988 0.99814 0.91733 1.06056 0.92891 0.92794 0.88433 0.84600 0.84241 0.91396 0.91387 0.90992 0.92137 0.92488 0.94753 0.94601 0.95667 0.95783 0.92894 0.85235 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.37 10.50 -19.71 -0.21 -3.57 16 3 C 0.08 0.92 6.69 -39.24 -0.26 0.65 16 4 C -0.11 -1.25 9.98 -39.45 -0.39 -1.64 16 5 C -0.11 -1.41 9.98 -39.45 -0.39 -1.80 16 6 C 0.11 1.42 6.69 -39.24 -0.26 1.16 16 7 O -0.30 -4.49 9.22 -24.52 -0.23 -4.71 16 8 C 0.07 0.86 4.61 37.16 0.17 1.03 16 9 C 0.09 1.30 3.13 -26.73 -0.08 1.21 16 10 H 0.07 0.97 7.79 -51.93 -0.40 0.56 16 11 C -0.17 -2.35 9.33 37.16 0.35 -2.01 16 12 O -0.38 -7.71 9.95 -40.08 -0.40 -8.10 16 13 C 0.07 1.47 5.69 37.16 0.21 1.68 16 14 C 0.03 0.68 5.34 -27.89 -0.15 0.53 16 15 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 19 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.17 -2.03 9.03 -39.45 -0.36 -2.39 16 24 C -0.17 -1.78 9.03 -39.45 -0.36 -2.13 16 25 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 26 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 29 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.07 0.68 7.65 -51.93 -0.40 0.28 16 31 H 0.07 0.88 7.67 -51.93 -0.40 0.49 16 32 H 0.07 1.08 7.56 -51.93 -0.39 0.68 16 33 H 0.06 0.85 7.87 -51.93 -0.41 0.44 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.71 8.09 -51.93 -0.42 0.29 16 36 H 0.04 0.75 7.87 -51.93 -0.41 0.34 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.13 1.27 6.29 -52.49 -0.33 0.94 16 41 H 0.13 1.03 6.29 -52.49 -0.33 0.70 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -33.13 344.83 -7.23 -40.36 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -6.36 Total: -3.08 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -0.95 Total: -16.27 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.83 Total: -16.39 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.13 -7.23 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.880 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds