Wall clock time and date at job start Tue Mar 31 2020 01:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35991 * 116.99994 * 2 1 4 4 C 1.38699 * 119.99942 * 180.02562 * 3 2 1 5 5 C 1.38131 * 119.99543 * 180.02562 * 4 3 2 6 6 C 1.38694 * 120.00461 * 359.97438 * 5 4 3 7 7 O 1.35979 * 120.00238 * 179.97438 * 6 5 4 8 8 C 1.42906 * 116.99937 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46919 * 179.97438 * 8 7 6 10 10 H 1.08993 * 109.46984 * 185.00030 * 9 8 7 11 11 C 1.53002 * 109.47517 * 305.00565 * 9 8 7 12 12 O 1.42902 * 109.46922 * 65.00622 * 9 8 7 13 13 C 1.42898 * 114.00186 * 149.99499 * 12 9 8 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 9 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 C 1.38708 * 119.99715 * 0.24959 * 6 5 4 24 24 C 1.38130 * 119.99898 * 359.49604 * 23 6 5 25 25 H 1.08994 * 109.47276 * 300.00100 * 1 2 3 26 26 H 1.09003 * 109.46904 * 60.00415 * 1 2 3 27 27 H 1.09001 * 109.46887 * 179.97438 * 1 2 3 28 28 H 1.07994 * 119.99824 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.99302 * 179.97438 * 5 4 3 30 30 H 1.09005 * 109.46586 * 60.00657 * 8 7 6 31 31 H 1.08994 * 109.47420 * 300.00180 * 8 7 6 32 32 H 1.08997 * 109.46833 * 60.00170 * 11 9 8 33 33 H 1.09001 * 109.46890 * 179.97438 * 11 9 8 34 34 H 1.09000 * 109.46986 * 299.99733 * 11 9 8 35 35 H 1.09002 * 109.47259 * 300.00293 * 13 12 9 36 36 H 1.09001 * 109.47074 * 60.00315 * 13 12 9 37 37 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 38 38 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 39 39 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 40 40 H 1.08000 * 119.99932 * 179.72765 * 23 6 5 41 41 H 1.07998 * 119.99957 * 180.22449 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4314 1.2843 -0.0005 5 6 4.0585 2.5151 0.0000 6 6 3.3031 3.6783 0.0005 7 8 3.9204 4.8898 0.0016 8 6 3.0803 6.0459 0.0015 9 6 3.9476 7.3064 0.0034 10 1 3.3100 8.1859 0.0929 11 6 4.9171 7.2568 1.1860 12 8 4.6879 7.3771 -1.2168 13 6 4.9745 8.7094 -1.6465 14 6 5.7654 8.6642 -2.9554 15 6 6.0682 10.0693 -3.4083 16 1 5.7306 10.9104 -2.8210 17 6 6.7770 10.2810 -4.5718 18 7 7.1885 9.2566 -5.2867 19 14 7.1517 12.0227 -5.1335 20 1 6.5825 12.9896 -4.1608 21 1 8.6225 12.2109 -5.2149 22 1 6.5486 12.2520 -6.4709 23 6 1.9179 3.6056 0.0058 24 6 1.2909 2.3749 -0.0001 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0196 0.3785 -0.0005 29 1 5.1370 2.5715 0.0000 30 1 2.4505 6.0374 0.8912 31 1 2.4517 6.0383 -0.8889 32 1 5.5547 6.3773 1.0963 33 1 5.5352 8.1546 1.1870 34 1 4.3524 7.2029 2.1168 35 1 4.0406 9.2488 -1.8052 36 1 5.5631 9.2186 -0.8834 37 1 6.6992 8.1247 -2.7972 38 1 5.1766 8.1552 -3.7184 39 1 7.6876 9.4055 -6.1050 40 1 1.3297 4.5113 0.0106 41 1 0.2124 2.3183 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205649182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:48 Heat of formation + Delta-G solvation = -127.847259 kcal Electronic energy + Delta-G solvation = -21017.203218 eV Core-core repulsion = 17669.010862 eV Total energy + Delta-G solvation = -3348.192355 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.38040 -40.14446 -39.01578 -37.23042 -35.45115 -33.40383 -32.17043 -31.39119 -30.18793 -28.00320 -27.75448 -26.62825 -23.91692 -22.99064 -22.84987 -21.84052 -19.48001 -18.83967 -18.50641 -17.63161 -17.20715 -16.71404 -16.60146 -16.52871 -16.18493 -15.78524 -15.72003 -14.96863 -14.49095 -14.44682 -14.31890 -13.97750 -13.85258 -13.54356 -13.35609 -13.10387 -12.88143 -12.85507 -12.60423 -12.41168 -12.34380 -12.10188 -11.81070 -11.62950 -11.44612 -11.32676 -11.27776 -10.66583 -10.36107 -10.07630 -8.69994 -8.23922 -6.37443 0.25972 0.47729 1.40738 1.42186 1.55628 2.25991 2.37197 2.46382 2.74122 2.86697 3.09916 3.70417 3.84427 3.90351 4.01100 4.15248 4.22971 4.29322 4.35802 4.42523 4.44031 4.46680 4.50381 4.52915 4.61643 4.75666 4.79519 4.91544 4.93792 4.99522 5.06399 5.27913 5.31084 5.37060 5.38894 5.57963 5.60162 5.73610 6.11221 6.35564 6.47508 6.58682 6.79487 7.32653 8.89582 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.029106 B = 0.002653 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.754175 B =10550.454322 C =10971.371897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.075 3.925 4 C -0.118 4.118 5 C -0.128 4.128 6 C 0.079 3.921 7 O -0.323 6.323 8 C 0.064 3.936 9 C 0.074 3.926 10 H 0.099 0.901 11 C -0.166 4.166 12 O -0.405 6.405 13 C 0.085 3.915 14 C 0.027 3.973 15 C -0.543 4.543 16 H 0.070 0.930 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.976 3.024 20 H -0.256 1.256 21 H -0.278 1.278 22 H -0.277 1.277 23 C -0.175 4.175 24 C -0.166 4.166 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.149 0.851 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.046 0.954 37 H -0.011 1.011 38 H -0.009 1.009 39 H 0.265 0.735 40 H 0.148 0.852 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.731 -13.835 15.408 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.030 3.970 4 C -0.137 4.137 5 C -0.147 4.147 6 C 0.034 3.966 7 O -0.238 6.238 8 C -0.011 4.011 9 C 0.017 3.983 10 H 0.117 0.883 11 C -0.223 4.223 12 O -0.326 6.326 13 C 0.009 3.991 14 C -0.010 4.010 15 C -0.581 4.581 16 H 0.088 0.912 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.800 3.200 20 H -0.180 1.180 21 H -0.203 1.203 22 H -0.202 1.202 23 C -0.194 4.194 24 C -0.185 4.185 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.136 0.864 28 H 0.167 0.833 29 H 0.156 0.844 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.008 0.992 38 H 0.010 0.990 39 H 0.074 0.926 40 H 0.166 0.834 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.309 -14.182 15.166 25.797 hybrid contribution 0.115 0.971 -0.605 1.150 sum -15.194 -13.210 14.561 24.847 Atomic orbital electron populations 1.23318 0.76692 1.05502 1.02111 1.86048 1.23234 1.26410 1.89327 1.19061 0.92482 0.84883 1.00525 1.20409 0.91944 0.97912 1.03401 1.20437 1.00733 0.89475 1.04015 1.19248 0.91989 0.85730 0.99676 1.86166 1.36409 1.12344 1.88843 1.23098 0.92586 0.82433 1.02937 1.22452 0.93718 0.96794 0.85346 0.88336 1.22155 1.00202 1.02113 0.97872 1.88026 1.75391 1.28499 1.40657 1.22513 0.98141 0.82347 0.96120 1.18937 0.93950 0.96373 0.91789 1.21512 1.35627 0.92663 1.08271 0.91184 1.26098 0.95249 1.02206 0.96555 1.70152 1.38480 1.32789 1.15984 0.85231 0.77985 0.78448 0.78343 1.17996 1.20335 1.20232 1.21302 0.92828 0.99576 1.05657 1.21292 1.01212 0.91007 1.04971 0.91649 0.92073 0.86377 0.83339 0.84434 0.87597 0.91622 0.92959 0.92797 0.89139 0.93133 0.93596 0.99241 0.99032 0.92581 0.83408 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.54 10.50 -93.44 -0.98 -7.52 16 3 C 0.08 1.63 6.69 22.49 0.15 1.78 16 4 C -0.12 -2.69 9.98 22.35 0.22 -2.46 16 5 C -0.13 -3.28 9.98 22.35 0.22 -3.06 16 6 C 0.08 2.12 6.69 22.49 0.15 2.27 16 7 O -0.32 -9.85 9.22 -88.67 -0.82 -10.67 16 8 C 0.06 1.60 4.61 71.98 0.33 1.93 16 9 C 0.07 2.14 3.13 30.59 0.10 2.24 16 10 H 0.10 2.34 7.79 -2.39 -0.02 2.32 16 11 C -0.17 -4.36 9.33 71.98 0.67 -3.69 16 12 O -0.41 -16.79 9.95 -144.34 -1.44 -18.23 16 13 C 0.08 3.73 5.69 71.98 0.41 4.14 16 14 C 0.03 1.51 5.34 29.85 0.16 1.67 16 15 C -0.54 -31.47 9.11 25.60 0.23 -31.23 16 16 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 17 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 18 N -0.93 -58.58 13.29 21.45 0.28 -58.30 16 19 Si 0.98 44.36 29.54 68.60 2.03 46.39 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 23 C -0.17 -3.82 9.03 22.36 0.20 -3.62 16 24 C -0.17 -3.22 9.03 22.35 0.20 -3.02 16 25 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 26 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 27 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.11 1.80 7.65 -2.38 -0.02 1.78 16 31 H 0.07 1.63 7.67 -2.39 -0.02 1.62 16 32 H 0.05 1.57 7.56 -2.39 -0.02 1.55 16 33 H 0.05 1.46 7.87 -2.39 -0.02 1.44 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 36 H 0.05 1.91 7.87 -2.39 -0.02 1.89 16 37 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.15 2.55 6.29 -2.91 -0.02 2.54 16 41 H 0.16 2.04 6.29 -2.91 -0.02 2.02 16 Total: -1.00 -73.73 344.83 4.70 -69.03 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.00 Total: 10.76 kcal Atomic # 6 Polarization: -36.09 SS G_CDS: 4.63 Total: -31.47 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.28 Total: -58.30 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -3.24 Total: -36.42 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -73.73 4.70 -69.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.814 kcal (2) G-P(sol) polarization free energy of solvation -73.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds