Wall clock time and date at job start Tue Mar 31 2020 01:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99510 * 2 1 4 4 C 1.38698 * 119.99843 * 0.27494 * 3 2 1 5 5 C 1.38130 * 119.99507 * 180.24049 * 4 3 2 6 6 C 1.38701 * 119.99962 * 359.48187 * 5 4 3 7 7 O 1.35982 * 119.99934 * 180.28437 * 6 5 4 8 8 C 1.42904 * 117.00225 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47233 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47061 * 174.99984 * 9 8 7 11 11 C 1.53004 * 109.47332 * 54.99810 * 9 8 7 12 12 O 1.42902 * 109.46872 * 294.99657 * 9 8 7 13 13 C 1.42907 * 113.99739 * 210.00234 * 12 9 8 14 14 C 1.52999 * 109.46892 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.46977 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00013 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99937 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00408 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00027 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46842 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47704 * 120.00023 * 19 17 15 22 22 H 1.48500 * 109.46844 * 239.99874 * 19 17 15 23 23 C 1.38695 * 120.00147 * 0.26056 * 6 5 4 24 24 C 1.38135 * 119.99861 * 359.97438 * 23 6 5 25 25 H 1.08998 * 109.47223 * 299.99870 * 1 2 3 26 26 H 1.08999 * 109.46872 * 60.00367 * 1 2 3 27 27 H 1.09002 * 109.46510 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00070 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.00169 * 179.76649 * 5 4 3 30 30 H 1.09001 * 109.46663 * 299.99591 * 8 7 6 31 31 H 1.08995 * 109.47194 * 59.99069 * 8 7 6 32 32 H 1.08994 * 109.47052 * 59.99625 * 11 9 8 33 33 H 1.08997 * 109.46766 * 180.02562 * 11 9 8 34 34 H 1.09003 * 109.46741 * 299.99808 * 11 9 8 35 35 H 1.09003 * 109.46397 * 300.00079 * 13 12 9 36 36 H 1.09000 * 109.47221 * 59.99783 * 13 12 9 37 37 H 1.09000 * 109.46996 * 299.99786 * 14 13 12 38 38 H 1.09000 * 109.47630 * 59.99709 * 14 13 12 39 39 H 0.97000 * 120.00402 * 180.02562 * 18 17 15 40 40 H 1.08005 * 120.00034 * 180.02562 * 23 6 5 41 41 H 1.08001 * 119.99636 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2908 2.3749 0.0058 5 6 1.9178 3.6057 0.0007 6 6 3.3029 3.6783 0.0008 7 8 3.9202 4.8900 0.0017 8 6 5.3492 4.8901 0.0011 9 6 5.8591 6.3326 0.0017 10 1 6.9455 6.3340 0.0908 11 6 5.2494 7.0887 1.1839 12 8 5.4806 6.9720 -1.2190 13 6 6.3899 7.9868 -1.6498 14 6 5.8871 8.5999 -2.9584 15 6 6.8457 9.6704 -3.4124 16 1 7.7253 9.8918 -2.8260 17 6 6.5998 10.3674 -4.5763 18 7 5.5286 10.0983 -5.2901 19 14 7.7883 11.6939 -5.1395 20 1 8.9056 11.8027 -4.1672 21 1 8.3280 11.3399 -6.4768 22 1 7.0759 12.9943 -5.2217 23 6 4.0584 2.5152 0.0004 24 6 3.4313 1.2844 0.0006 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 0.2123 2.3183 0.0098 29 1 1.3296 4.5114 0.0014 30 1 5.7129 4.3755 0.8906 31 1 5.7123 4.3770 -0.8893 32 1 5.5381 6.6009 2.1149 33 1 5.6124 8.1165 1.1839 34 1 4.1631 7.0874 1.0946 35 1 6.4560 8.7628 -0.8872 36 1 7.3751 7.5484 -1.8084 37 1 5.8206 7.8240 -3.7211 38 1 4.9020 9.0384 -2.7994 39 1 5.3558 10.5883 -6.1092 40 1 5.1370 2.5718 0.0009 41 1 4.0196 0.3787 0.0007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205649184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:51 Heat of formation + Delta-G solvation = -107.326320 kcal Electronic energy + Delta-G solvation = -21004.511255 eV Core-core repulsion = 17657.208754 eV Total energy + Delta-G solvation = -3347.302501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49162 -39.20284 -37.67506 -36.24054 -33.39738 -31.98721 -31.28095 -29.51273 -29.22312 -27.57953 -26.51598 -24.58484 -22.98450 -22.18551 -20.87766 -20.63906 -18.58682 -17.80684 -16.77624 -16.44566 -16.02500 -15.82160 -15.35670 -15.04353 -14.85049 -14.58550 -14.42317 -13.92834 -13.63278 -13.19195 -12.87111 -12.71881 -12.58874 -12.27904 -12.25063 -12.02017 -11.71336 -11.46224 -11.14944 -11.02397 -10.80034 -10.59105 -10.47082 -10.37168 -10.26838 -9.46852 -9.21966 -9.17704 -8.88834 -8.35361 -7.79289 -6.02398 -4.06175 1.12319 1.38792 3.08233 3.29174 3.30137 3.37083 3.40865 3.63009 4.15779 4.48087 4.62216 4.66850 4.78474 4.89184 4.93433 5.01783 5.09795 5.18403 5.19507 5.30859 5.33541 5.34100 5.51357 5.64640 5.79168 5.83825 5.88779 6.02886 6.17386 6.22272 6.24778 6.31959 6.42573 6.50292 6.89691 7.15168 7.47320 7.57206 7.80703 7.83363 8.12197 8.36654 9.00825 9.57531 11.09272 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.002663 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.735304 B =10510.296413 C =11045.923731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.080 3.920 4 C -0.166 4.166 5 C -0.114 4.114 6 C 0.105 3.895 7 O -0.296 6.296 8 C 0.065 3.935 9 C 0.086 3.914 10 H 0.074 0.926 11 C -0.171 4.171 12 O -0.377 6.377 13 C 0.067 3.933 14 C 0.025 3.975 15 C -0.523 4.523 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.896 3.104 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.173 4.173 24 C -0.111 4.111 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.134 0.866 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 -18.417 14.256 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.036 3.964 4 C -0.185 4.185 5 C -0.133 4.133 6 C 0.059 3.941 7 O -0.210 6.210 8 C -0.011 4.011 9 C 0.027 3.973 10 H 0.092 0.908 11 C -0.229 4.229 12 O -0.296 6.296 13 C -0.009 4.009 14 C -0.012 4.012 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.529 5.529 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.192 4.192 24 C -0.129 4.129 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.150 0.850 29 H 0.153 0.847 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.042 0.958 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.152 0.848 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.880 -18.395 13.989 24.112 hybrid contribution 0.777 0.820 -0.284 1.165 sum -6.103 -17.575 13.705 23.107 Atomic orbital electron populations 1.23016 0.78697 1.03707 1.01301 1.86057 1.21095 1.26846 1.89545 1.18864 0.92260 0.84164 1.01130 1.21034 0.99952 0.91436 1.06081 1.20258 0.91654 0.98055 1.03305 1.18993 0.92335 0.84739 0.98005 1.86209 1.20946 1.25586 1.88225 1.23007 0.78926 0.97799 1.01347 1.22032 0.97663 0.90261 0.87308 0.90826 1.22198 1.03086 1.00686 0.96893 1.88077 1.50398 1.53393 1.37748 1.22951 0.91233 0.88057 0.98636 1.19065 0.97287 0.95303 0.89554 1.21092 1.08368 1.18960 1.07723 0.92522 1.25003 0.95488 0.97341 0.96521 1.69993 1.26196 1.41388 1.15349 0.86477 0.80990 0.81573 0.78600 1.19718 1.20915 1.20914 1.21109 1.00250 0.91445 1.06402 1.20172 0.91349 0.97946 1.03461 0.92809 0.92689 0.88454 0.84978 0.84722 0.91301 0.91308 0.92468 0.92150 0.91044 0.94615 0.94719 0.95777 0.95689 0.92899 0.84781 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.38 10.50 -19.72 -0.21 -3.58 16 3 C 0.08 0.92 6.69 -39.24 -0.26 0.65 16 4 C -0.17 -1.80 9.03 -39.45 -0.36 -2.16 16 5 C -0.11 -1.42 9.98 -39.45 -0.39 -1.81 16 6 C 0.11 1.42 6.69 -39.24 -0.26 1.16 16 7 O -0.30 -4.50 9.22 -24.53 -0.23 -4.72 16 8 C 0.06 0.85 4.61 37.16 0.17 1.02 16 9 C 0.09 1.29 3.13 -26.73 -0.08 1.21 16 10 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 11 C -0.17 -2.35 9.33 37.16 0.35 -2.01 16 12 O -0.38 -7.71 9.95 -40.08 -0.40 -8.11 16 13 C 0.07 1.47 5.69 37.16 0.21 1.68 16 14 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 15 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 16 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16 19 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.17 -2.03 9.03 -39.45 -0.36 -2.39 16 24 C -0.11 -1.24 9.98 -39.45 -0.39 -1.63 16 25 H 0.05 0.30 7.65 -51.93 -0.40 -0.10 16 26 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.13 1.09 6.29 -52.49 -0.33 0.76 16 29 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 31 H 0.07 0.89 7.66 -51.93 -0.40 0.49 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.85 7.87 -51.93 -0.41 0.44 16 34 H 0.07 1.07 7.56 -51.93 -0.39 0.68 16 35 H 0.04 0.75 7.87 -51.93 -0.41 0.34 16 36 H 0.03 0.72 8.08 -51.93 -0.42 0.30 16 37 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.13 1.31 6.29 -52.48 -0.33 0.98 16 41 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -33.16 344.83 -7.23 -40.39 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -6.36 Total: -3.05 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -0.95 Total: -16.30 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.83 Total: -16.42 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.16 -7.23 -40.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.936 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds