Wall clock time and date at job start Tue Mar 31 2020 01:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99510 * 2 1 4 4 C 1.38698 * 119.99843 * 0.27494 * 3 2 1 5 5 C 1.38130 * 119.99507 * 180.24049 * 4 3 2 6 6 C 1.38701 * 119.99962 * 359.48187 * 5 4 3 7 7 O 1.35982 * 119.99934 * 180.28437 * 6 5 4 8 8 C 1.42904 * 117.00225 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47233 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47061 * 174.99984 * 9 8 7 11 11 C 1.53004 * 109.47332 * 54.99810 * 9 8 7 12 12 O 1.42902 * 109.46872 * 294.99657 * 9 8 7 13 13 C 1.42907 * 113.99739 * 210.00234 * 12 9 8 14 14 C 1.52999 * 109.46892 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.46977 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00013 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99937 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00408 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00027 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46842 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47704 * 120.00023 * 19 17 15 22 22 H 1.48500 * 109.46844 * 239.99874 * 19 17 15 23 23 C 1.38695 * 120.00147 * 0.26056 * 6 5 4 24 24 C 1.38135 * 119.99861 * 359.97438 * 23 6 5 25 25 H 1.08998 * 109.47223 * 299.99870 * 1 2 3 26 26 H 1.08999 * 109.46872 * 60.00367 * 1 2 3 27 27 H 1.09002 * 109.46510 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00070 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.00169 * 179.76649 * 5 4 3 30 30 H 1.09001 * 109.46663 * 299.99591 * 8 7 6 31 31 H 1.08995 * 109.47194 * 59.99069 * 8 7 6 32 32 H 1.08994 * 109.47052 * 59.99625 * 11 9 8 33 33 H 1.08997 * 109.46766 * 180.02562 * 11 9 8 34 34 H 1.09003 * 109.46741 * 299.99808 * 11 9 8 35 35 H 1.09003 * 109.46397 * 300.00079 * 13 12 9 36 36 H 1.09000 * 109.47221 * 59.99783 * 13 12 9 37 37 H 1.09000 * 109.46996 * 299.99786 * 14 13 12 38 38 H 1.09000 * 109.47630 * 59.99709 * 14 13 12 39 39 H 0.97000 * 120.00402 * 180.02562 * 18 17 15 40 40 H 1.08005 * 120.00034 * 180.02562 * 23 6 5 41 41 H 1.08001 * 119.99636 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2908 2.3749 0.0058 5 6 1.9178 3.6057 0.0007 6 6 3.3029 3.6783 0.0008 7 8 3.9202 4.8900 0.0017 8 6 5.3492 4.8901 0.0011 9 6 5.8591 6.3326 0.0017 10 1 6.9455 6.3340 0.0908 11 6 5.2494 7.0887 1.1839 12 8 5.4806 6.9720 -1.2190 13 6 6.3899 7.9868 -1.6498 14 6 5.8871 8.5999 -2.9584 15 6 6.8457 9.6704 -3.4124 16 1 7.7253 9.8918 -2.8260 17 6 6.5998 10.3674 -4.5763 18 7 5.5286 10.0983 -5.2901 19 14 7.7883 11.6939 -5.1395 20 1 8.9056 11.8027 -4.1672 21 1 8.3280 11.3399 -6.4768 22 1 7.0759 12.9943 -5.2217 23 6 4.0584 2.5152 0.0004 24 6 3.4313 1.2844 0.0006 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 0.2123 2.3183 0.0098 29 1 1.3296 4.5114 0.0014 30 1 5.7129 4.3755 0.8906 31 1 5.7123 4.3770 -0.8893 32 1 5.5381 6.6009 2.1149 33 1 5.6124 8.1165 1.1839 34 1 4.1631 7.0874 1.0946 35 1 6.4560 8.7628 -0.8872 36 1 7.3751 7.5484 -1.8084 37 1 5.8206 7.8240 -3.7211 38 1 4.9020 9.0384 -2.7994 39 1 5.3558 10.5883 -6.1092 40 1 5.1370 2.5718 0.0009 41 1 4.0196 0.3787 0.0007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205649184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:51 Heat of formation + Delta-G solvation = -127.935478 kcal Electronic energy + Delta-G solvation = -21005.404935 eV Core-core repulsion = 17657.208754 eV Total energy + Delta-G solvation = -3348.196181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.37599 -40.15151 -39.01403 -37.21491 -35.45134 -33.41642 -32.19911 -31.36189 -30.11722 -28.36255 -27.44103 -26.60912 -23.89536 -23.13159 -22.87067 -21.72628 -19.47419 -18.84792 -18.49905 -17.56353 -17.24383 -16.73053 -16.60622 -16.54237 -16.18290 -15.82709 -15.69856 -15.03457 -14.52306 -14.35469 -14.22875 -14.00648 -13.82920 -13.54624 -13.37467 -13.10075 -12.88670 -12.88068 -12.63675 -12.41352 -12.34209 -12.08866 -11.80768 -11.62046 -11.44509 -11.32620 -11.26750 -10.66564 -10.35919 -10.08797 -8.69725 -8.23899 -6.37409 0.25544 0.47844 1.40771 1.42151 1.55629 2.26224 2.37225 2.46251 2.73936 2.87022 3.09931 3.73832 3.84943 3.91141 4.01659 4.08613 4.22607 4.32694 4.33271 4.42516 4.44185 4.44438 4.46884 4.60107 4.65739 4.74551 4.79446 4.93572 4.95745 4.99170 5.00616 5.29633 5.31722 5.37168 5.38799 5.57989 5.59904 5.73607 6.11260 6.34231 6.47429 6.58880 6.79467 7.32696 8.89589 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.002663 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.735304 B =10510.296413 C =11045.923731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.075 3.925 4 C -0.165 4.165 5 C -0.130 4.130 6 C 0.079 3.921 7 O -0.323 6.323 8 C 0.063 3.937 9 C 0.074 3.926 10 H 0.099 0.901 11 C -0.166 4.166 12 O -0.405 6.405 13 C 0.085 3.915 14 C 0.027 3.973 15 C -0.543 4.543 16 H 0.070 0.930 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.976 3.024 20 H -0.256 1.256 21 H -0.277 1.277 22 H -0.278 1.278 23 C -0.173 4.173 24 C -0.119 4.119 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.119 0.881 28 H 0.156 0.844 29 H 0.134 0.866 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.051 0.949 37 H -0.009 1.009 38 H -0.011 1.011 39 H 0.265 0.735 40 H 0.152 0.848 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 -19.103 15.415 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.030 3.970 4 C -0.184 4.184 5 C -0.149 4.149 6 C 0.034 3.966 7 O -0.238 6.238 8 C -0.011 4.011 9 C 0.017 3.983 10 H 0.117 0.883 11 C -0.223 4.223 12 O -0.326 6.326 13 C 0.009 3.991 14 C -0.010 4.010 15 C -0.581 4.581 16 H 0.088 0.912 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.800 3.200 20 H -0.180 1.180 21 H -0.202 1.202 22 H -0.203 1.203 23 C -0.191 4.191 24 C -0.137 4.137 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.137 0.863 28 H 0.173 0.827 29 H 0.152 0.848 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.010 0.990 38 H 0.008 0.992 39 H 0.074 0.926 40 H 0.170 0.830 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.644 -19.104 15.174 25.041 hybrid contribution 0.268 0.897 -0.607 1.116 sum -5.376 -18.206 14.567 23.928 Atomic orbital electron populations 1.23319 0.76745 1.05514 1.02089 1.86046 1.23182 1.26348 1.89339 1.19074 0.92659 0.84696 1.00546 1.21255 1.01183 0.90683 1.05269 1.20451 0.91713 0.98795 1.03945 1.19248 0.92897 0.84816 0.99672 1.86162 1.21938 1.26825 1.88849 1.23109 0.78368 0.96639 1.03019 1.22452 0.99462 0.91067 0.85328 0.88331 1.22153 1.01711 1.00572 0.97887 1.88026 1.50660 1.53265 1.40624 1.22517 0.91591 0.88911 0.96116 1.18938 0.95798 0.94514 0.91789 1.21515 1.08927 1.19367 1.08274 0.91189 1.26091 0.97410 1.00022 0.96561 1.70145 1.28394 1.42888 1.15971 0.85236 0.78598 0.77854 0.78342 1.18010 1.20237 1.20323 1.21298 1.01115 0.90978 1.05739 1.20458 0.91749 0.98438 1.03066 0.91733 0.92140 0.86276 0.82688 0.84848 0.87532 0.91571 0.89137 0.92801 0.92975 0.93600 0.93131 0.99036 0.99226 0.92579 0.83039 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.52 10.50 -93.49 -0.98 -7.50 16 3 C 0.08 1.63 6.69 22.49 0.15 1.78 16 4 C -0.17 -3.46 9.03 22.35 0.20 -3.26 16 5 C -0.13 -3.27 9.98 22.35 0.22 -3.05 16 6 C 0.08 2.13 6.69 22.49 0.15 2.28 16 7 O -0.32 -9.86 9.22 -88.71 -0.82 -10.68 16 8 C 0.06 1.59 4.61 71.98 0.33 1.92 16 9 C 0.07 2.15 3.13 30.59 0.10 2.24 16 10 H 0.10 2.35 7.79 -2.39 -0.02 2.33 16 11 C -0.17 -4.36 9.33 71.98 0.67 -3.69 16 12 O -0.41 -16.81 9.95 -144.34 -1.44 -18.24 16 13 C 0.08 3.73 5.69 71.98 0.41 4.13 16 14 C 0.03 1.52 5.34 29.85 0.16 1.68 16 15 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 16 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 17 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 18 N -0.93 -58.53 13.29 21.45 0.28 -58.24 16 19 Si 0.98 44.37 29.54 68.60 2.03 46.39 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 C -0.17 -3.88 9.03 22.35 0.20 -3.67 16 24 C -0.12 -2.52 9.98 22.35 0.22 -2.29 16 25 H 0.06 0.59 7.65 -2.39 -0.02 0.57 16 26 H 0.06 0.62 7.67 -2.39 -0.02 0.60 16 27 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.16 2.35 6.29 -2.91 -0.02 2.33 16 29 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 30 H 0.11 1.83 7.66 -2.39 -0.02 1.81 16 31 H 0.07 1.66 7.66 -2.39 -0.02 1.64 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.46 7.87 -2.39 -0.02 1.44 16 34 H 0.05 1.56 7.56 -2.39 -0.02 1.54 16 35 H 0.05 1.91 7.87 -2.39 -0.02 1.89 16 36 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 39 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 40 H 0.15 2.70 6.29 -2.91 -0.02 2.68 16 41 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -73.59 344.83 4.70 -68.89 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 1.00 Total: 10.95 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 4.63 Total: -31.57 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.28 Total: -58.24 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -3.24 Total: -36.42 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -73.59 4.70 -68.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.047 kcal (2) G-P(sol) polarization free energy of solvation -73.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds