Wall clock time and date at job start Tue Mar 31 2020 01:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35889 * 116.99737 * 2 1 4 4 C 1.38789 * 120.03186 * 0.02562 * 3 2 1 5 5 C 1.38151 * 120.05946 * 180.02562 * 4 3 2 6 6 C 1.38207 * 120.10744 * 359.97176 * 5 4 3 7 7 C 1.38750 * 120.05211 * 0.28090 * 6 5 4 8 8 O 1.35900 * 120.02680 * 179.72387 * 7 6 5 9 9 C 1.42903 * 116.99655 * 359.97438 * 8 7 6 10 10 C 1.53003 * 109.46644 * 180.02562 * 9 8 7 11 11 H 1.09006 * 109.47098 * 174.99985 * 10 9 8 12 12 C 1.53000 * 109.47472 * 55.00366 * 10 9 8 13 13 O 1.42902 * 109.47179 * 295.00012 * 10 9 8 14 14 C 1.42901 * 113.99846 * 210.00537 * 13 10 9 15 15 C 1.52997 * 109.46898 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.47213 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00320 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00333 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99842 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99992 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46944 * 90.00351 * 20 18 16 22 22 H 1.48498 * 109.46772 * 210.00027 * 20 18 16 23 23 H 1.48496 * 109.47248 * 330.00061 * 20 18 16 24 24 C 1.38618 * 120.02438 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47343 * 299.99493 * 1 2 3 26 26 H 1.08996 * 109.47575 * 59.99862 * 1 2 3 27 27 H 1.09001 * 109.46934 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.97290 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.95096 * 179.97438 * 5 4 3 30 30 H 1.08002 * 119.97039 * 179.97438 * 6 5 4 31 31 H 1.08999 * 109.47059 * 300.00004 * 9 8 7 32 32 H 1.08994 * 109.47246 * 60.00515 * 9 8 7 33 33 H 1.08998 * 109.46985 * 59.99125 * 12 10 9 34 34 H 1.08999 * 109.47200 * 180.02562 * 12 10 9 35 35 H 1.09006 * 109.46648 * 299.99895 * 12 10 9 36 36 H 1.09004 * 109.46610 * 299.99512 * 14 13 10 37 37 H 1.08995 * 109.47214 * 59.99639 * 14 13 10 38 38 H 1.09005 * 109.47009 * 299.99610 * 15 14 13 39 39 H 1.08995 * 109.47711 * 59.99664 * 15 14 13 40 40 H 0.96998 * 119.99909 * 180.02562 * 19 18 16 41 41 H 1.07992 * 120.05687 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9171 3.6064 0.0000 6 6 3.2971 3.6821 -0.0005 7 6 4.0567 2.5210 -0.0063 8 8 5.4136 2.5960 -0.0125 9 6 5.9910 3.9031 -0.0131 10 6 7.5166 3.7867 -0.0210 11 1 7.9564 4.7800 -0.1110 12 6 7.9562 2.9250 -1.2063 13 8 7.9543 3.1805 1.1969 14 6 9.2520 3.6018 1.6221 15 6 9.6158 2.8926 2.9280 16 6 10.9845 3.3362 3.3761 17 1 11.5396 4.0522 2.7881 18 6 11.5282 2.8283 4.5370 19 7 10.8525 1.9561 5.2529 20 14 13.2251 3.3778 5.0920 21 1 13.0974 4.5703 5.9677 22 1 13.8796 2.2782 5.8455 23 1 14.0472 3.7216 3.9041 24 6 3.4301 1.2840 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2120 2.3187 0.0014 29 1 1.3277 4.5114 0.0000 30 1 3.7846 4.6458 -0.0013 31 1 5.6637 4.4445 -0.9007 32 1 5.6720 4.4417 0.8792 33 1 7.6223 3.3873 -2.1352 34 1 9.0430 2.8416 -1.2116 35 1 7.5165 1.9316 -1.1162 36 1 9.9849 3.3496 0.8557 37 1 9.2497 4.6799 1.7820 38 1 8.8828 3.1443 3.6946 39 1 9.6182 1.8145 2.7677 40 1 11.2349 1.5991 6.0697 41 1 4.0196 0.3792 -0.0014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205649587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:56 Heat of formation + Delta-G solvation = -107.491721 kcal Electronic energy + Delta-G solvation = -21066.634817 eV Core-core repulsion = 17719.325144 eV Total energy + Delta-G solvation = -3347.309673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52426 -39.26072 -37.67824 -36.33969 -33.40363 -32.04866 -30.91825 -29.53720 -29.28871 -27.68646 -26.62675 -24.57243 -22.88517 -22.23569 -20.86940 -20.65797 -18.86235 -16.96050 -16.52984 -16.45010 -16.11299 -16.07129 -15.80407 -15.25286 -14.93143 -14.58766 -14.46283 -13.94747 -13.67549 -13.13879 -12.78918 -12.67322 -12.44215 -12.25914 -12.18721 -11.92583 -11.64758 -11.42764 -11.17155 -11.01161 -10.88705 -10.75711 -10.60123 -10.38032 -10.26735 -9.46163 -9.18113 -8.88522 -8.58766 -8.34028 -8.21500 -6.01195 -4.05065 1.26264 1.32745 2.77103 3.31723 3.37565 3.40667 3.52127 3.64807 4.15498 4.48747 4.58745 4.77592 4.86811 4.87927 4.90501 4.99593 5.09089 5.11719 5.20204 5.30940 5.34486 5.34740 5.40848 5.65199 5.82305 5.88125 6.03142 6.07965 6.13810 6.23651 6.30009 6.32437 6.38425 6.49775 6.90459 7.17672 7.41813 7.57423 7.81849 7.83866 8.13086 8.37589 9.01699 9.58471 11.10427 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.025201 B = 0.002783 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.817684 B =10056.921810 C =10638.403459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.163 3.837 4 C -0.252 4.252 5 C -0.042 4.042 6 C -0.248 4.248 7 C 0.177 3.823 8 O -0.292 6.292 9 C 0.065 3.935 10 C 0.086 3.914 11 H 0.075 0.925 12 C -0.172 4.172 13 O -0.377 6.377 14 C 0.067 3.933 15 C 0.025 3.975 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.189 4.189 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.403 2.636 -14.158 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.118 3.882 4 C -0.271 4.271 5 C -0.060 4.060 6 C -0.267 4.267 7 C 0.130 3.870 8 O -0.205 6.205 9 C -0.010 4.010 10 C 0.027 3.973 11 H 0.093 0.907 12 C -0.229 4.229 13 O -0.296 6.296 14 C -0.009 4.009 15 C -0.012 4.012 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.529 5.529 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.208 4.208 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.256 2.040 -13.891 24.646 hybrid contribution 0.755 0.866 0.275 1.181 sum -19.501 2.906 -13.616 23.961 Atomic orbital electron populations 1.23059 0.78271 1.03917 1.01394 1.86072 1.21423 1.26862 1.88453 1.18561 0.91360 0.84142 0.94143 1.21069 0.99876 0.92256 1.13866 1.20665 0.93729 0.96996 0.94607 1.21197 0.94847 0.97689 1.12920 1.18646 0.83018 0.93072 0.92238 1.86196 1.16173 1.30833 1.87259 1.23062 0.93352 0.83017 1.01596 1.22043 0.90963 0.96880 0.87409 0.90733 1.22208 1.02035 1.01859 0.96842 1.88080 1.35764 1.67770 1.37995 1.22951 0.81479 0.97725 0.98713 1.19059 0.96147 0.96399 0.89575 1.21052 1.01492 1.25752 1.07944 0.92587 1.25004 0.97823 0.94989 0.96507 1.69986 1.37777 1.29743 1.15384 0.86530 0.84078 0.78258 0.78746 1.20597 1.21114 1.19848 1.19463 0.91391 0.97130 1.12828 0.92542 0.92648 0.88224 0.85586 0.85649 0.85308 0.91080 0.91085 0.92442 0.92089 0.90989 0.94593 0.94722 0.95788 0.95660 0.92840 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.59 10.49 -19.39 -0.20 -3.80 16 3 C 0.16 2.02 6.68 -39.24 -0.26 1.75 16 4 C -0.25 -2.61 9.03 -39.41 -0.36 -2.96 16 5 C -0.04 -0.42 10.04 -39.62 -0.40 -0.82 16 6 C -0.25 -2.89 9.04 -39.40 -0.36 -3.25 16 7 C 0.18 2.48 6.68 -39.24 -0.26 2.22 16 8 O -0.29 -4.53 9.22 -24.28 -0.22 -4.75 16 9 C 0.06 0.86 4.61 37.16 0.17 1.03 16 10 C 0.09 1.29 3.13 -26.73 -0.08 1.21 16 11 H 0.07 0.98 7.79 -51.93 -0.40 0.58 16 12 C -0.17 -2.38 9.33 37.16 0.35 -2.04 16 13 O -0.38 -7.75 9.95 -40.09 -0.40 -8.15 16 14 C 0.07 1.47 5.69 37.16 0.21 1.68 16 15 C 0.03 0.69 5.34 -27.89 -0.15 0.54 16 16 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.31 13.29 55.43 0.74 -26.58 16 20 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 24 C -0.19 -2.63 9.93 -39.29 -0.39 -3.02 16 25 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 26 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.13 0.97 6.29 -52.48 -0.33 0.64 16 29 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 30 H 0.13 1.27 6.29 -52.49 -0.33 0.94 16 31 H 0.07 0.71 7.66 -51.93 -0.40 0.31 16 32 H 0.07 0.92 7.66 -51.93 -0.40 0.52 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.86 7.87 -51.93 -0.41 0.46 16 35 H 0.07 1.09 7.56 -51.93 -0.39 0.70 16 36 H 0.04 0.76 7.87 -51.93 -0.41 0.35 16 37 H 0.03 0.72 8.08 -51.93 -0.42 0.30 16 38 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -33.33 344.82 -7.23 -40.55 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -6.36 Total: -2.94 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -0.95 Total: -16.26 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 0.74 Total: -26.58 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.83 Total: -16.70 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.33 -7.23 -40.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.940 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds