Wall clock time and date at job start Tue Mar 31 2020 01:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35889 * 116.99737 * 2 1 4 4 C 1.38789 * 120.03186 * 0.02562 * 3 2 1 5 5 C 1.38151 * 120.05946 * 180.02562 * 4 3 2 6 6 C 1.38207 * 120.10744 * 359.97176 * 5 4 3 7 7 C 1.38750 * 120.05211 * 0.28090 * 6 5 4 8 8 O 1.35900 * 120.02680 * 179.72387 * 7 6 5 9 9 C 1.42903 * 116.99655 * 359.97438 * 8 7 6 10 10 C 1.53003 * 109.46644 * 180.02562 * 9 8 7 11 11 H 1.09006 * 109.47098 * 174.99985 * 10 9 8 12 12 C 1.53000 * 109.47472 * 55.00366 * 10 9 8 13 13 O 1.42902 * 109.47179 * 295.00012 * 10 9 8 14 14 C 1.42901 * 113.99846 * 210.00537 * 13 10 9 15 15 C 1.52997 * 109.46898 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.47213 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00320 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00333 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99842 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99992 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46944 * 90.00351 * 20 18 16 22 22 H 1.48498 * 109.46772 * 210.00027 * 20 18 16 23 23 H 1.48496 * 109.47248 * 330.00061 * 20 18 16 24 24 C 1.38618 * 120.02438 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47343 * 299.99493 * 1 2 3 26 26 H 1.08996 * 109.47575 * 59.99862 * 1 2 3 27 27 H 1.09001 * 109.46934 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.97290 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.95096 * 179.97438 * 5 4 3 30 30 H 1.08002 * 119.97039 * 179.97438 * 6 5 4 31 31 H 1.08999 * 109.47059 * 300.00004 * 9 8 7 32 32 H 1.08994 * 109.47246 * 60.00515 * 9 8 7 33 33 H 1.08998 * 109.46985 * 59.99125 * 12 10 9 34 34 H 1.08999 * 109.47200 * 180.02562 * 12 10 9 35 35 H 1.09006 * 109.46648 * 299.99895 * 12 10 9 36 36 H 1.09004 * 109.46610 * 299.99512 * 14 13 10 37 37 H 1.08995 * 109.47214 * 59.99639 * 14 13 10 38 38 H 1.09005 * 109.47009 * 299.99610 * 15 14 13 39 39 H 1.08995 * 109.47711 * 59.99664 * 15 14 13 40 40 H 0.96998 * 119.99909 * 180.02562 * 19 18 16 41 41 H 1.07992 * 120.05687 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9171 3.6064 0.0000 6 6 3.2971 3.6821 -0.0005 7 6 4.0567 2.5210 -0.0063 8 8 5.4136 2.5960 -0.0125 9 6 5.9910 3.9031 -0.0131 10 6 7.5166 3.7867 -0.0210 11 1 7.9564 4.7800 -0.1110 12 6 7.9562 2.9250 -1.2063 13 8 7.9543 3.1805 1.1969 14 6 9.2520 3.6018 1.6221 15 6 9.6158 2.8926 2.9280 16 6 10.9845 3.3362 3.3761 17 1 11.5396 4.0522 2.7881 18 6 11.5282 2.8283 4.5370 19 7 10.8525 1.9561 5.2529 20 14 13.2251 3.3778 5.0920 21 1 13.0974 4.5703 5.9677 22 1 13.8796 2.2782 5.8455 23 1 14.0472 3.7216 3.9041 24 6 3.4301 1.2840 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2120 2.3187 0.0014 29 1 1.3277 4.5114 0.0000 30 1 3.7846 4.6458 -0.0013 31 1 5.6637 4.4445 -0.9007 32 1 5.6720 4.4417 0.8792 33 1 7.6223 3.3873 -2.1352 34 1 9.0430 2.8416 -1.2116 35 1 7.5165 1.9316 -1.1162 36 1 9.9849 3.3496 0.8557 37 1 9.2497 4.6799 1.7820 38 1 8.8828 3.1443 3.6946 39 1 9.6182 1.8145 2.7677 40 1 11.2349 1.5991 6.0697 41 1 4.0196 0.3792 -0.0014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205649587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:55 Heat of formation + Delta-G solvation = -128.626404 kcal Electronic energy + Delta-G solvation = -21067.551286 eV Core-core repulsion = 17719.325144 eV Total energy + Delta-G solvation = -3348.226142 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.42922 -40.23082 -39.03904 -37.31618 -35.46140 -33.48494 -31.90291 -31.31020 -30.27605 -28.41513 -27.58968 -26.61354 -23.79992 -23.20402 -22.87512 -21.74806 -19.77740 -18.70092 -17.75471 -17.38453 -17.31338 -17.00679 -16.70677 -16.57315 -16.51775 -16.15618 -15.77417 -15.09103 -14.56426 -14.36367 -14.25788 -13.98986 -13.70327 -13.52539 -13.13598 -13.03856 -12.90945 -12.85523 -12.59145 -12.37956 -12.32457 -12.07439 -11.84496 -11.71113 -11.61855 -11.40435 -11.34315 -10.65992 -10.36777 -9.52398 -9.09930 -8.23734 -6.37527 0.37442 0.43052 1.40529 1.43485 1.54621 1.92447 2.37226 2.67167 2.75523 2.86088 3.09949 3.74154 3.86643 3.99847 4.08329 4.12944 4.20957 4.23869 4.30605 4.41418 4.42320 4.43893 4.46132 4.55293 4.59658 4.73367 4.77652 4.89603 4.93008 4.98449 5.23890 5.27644 5.33562 5.37758 5.45330 5.56306 5.57901 5.73283 6.10925 6.35738 6.44620 6.52707 6.79177 7.32554 8.89592 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.025201 B = 0.002783 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.817684 B =10056.921810 C =10638.403459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.155 3.845 4 C -0.247 4.247 5 C -0.037 4.037 6 C -0.252 4.252 7 C 0.154 3.846 8 O -0.323 6.323 9 C 0.064 3.936 10 C 0.074 3.926 11 H 0.102 0.898 12 C -0.167 4.167 13 O -0.407 6.407 14 C 0.085 3.915 15 C 0.027 3.973 16 C -0.544 4.544 17 H 0.071 0.929 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.977 3.023 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.258 1.258 24 C -0.222 4.222 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.148 0.852 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.052 0.948 38 H -0.009 1.009 39 H -0.012 1.012 40 H 0.265 0.735 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.152 5.052 -15.317 26.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.109 3.891 4 C -0.266 4.266 5 C -0.055 4.055 6 C -0.271 4.271 7 C 0.108 3.892 8 O -0.237 6.237 9 C -0.010 4.010 10 C 0.016 3.984 11 H 0.120 0.880 12 C -0.224 4.224 13 O -0.327 6.327 14 C 0.009 3.991 15 C -0.010 4.010 16 C -0.582 4.582 17 H 0.089 0.911 18 C -0.201 4.201 19 N -0.574 5.574 20 Si 0.800 3.200 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.182 1.182 24 C -0.242 4.242 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.136 0.864 28 H 0.174 0.826 29 H 0.180 0.820 30 H 0.166 0.834 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.009 0.991 39 H 0.006 0.994 40 H 0.074 0.926 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.028 4.463 -15.075 26.256 hybrid contribution 0.816 0.050 0.595 1.011 sum -20.213 4.513 -14.480 25.270 Atomic orbital electron populations 1.23396 0.75862 1.05673 1.02648 1.86045 1.23987 1.26865 1.88344 1.18703 0.90948 0.85324 0.94077 1.21443 1.01327 0.91507 1.12297 1.21131 0.93350 0.98285 0.92702 1.21465 0.95645 0.97460 1.12485 1.18860 0.82648 0.93970 0.93677 1.86146 1.17364 1.32244 1.87900 1.23185 0.91836 0.82626 1.03403 1.22474 0.92531 0.98004 0.85342 0.87995 1.22166 1.01447 1.00857 0.97967 1.88032 1.34767 1.69001 1.40904 1.22520 0.82779 0.97673 0.96149 1.18934 0.95533 0.94743 0.91831 1.21486 1.02106 1.26098 1.08506 0.91132 1.26107 1.02694 0.94777 0.96517 1.70147 1.40148 1.31122 1.15995 0.85275 0.78094 0.77948 0.78666 1.19417 1.20792 1.18231 1.19575 0.92611 0.96850 1.15139 0.91458 0.91050 0.86444 0.82565 0.82005 0.83425 0.87144 0.91175 0.89006 0.92712 0.93234 0.93610 0.92964 0.99054 0.99358 0.92583 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.75 10.49 -92.31 -0.97 -8.72 16 3 C 0.16 3.83 6.68 22.49 0.15 3.98 16 4 C -0.25 -4.58 9.03 22.38 0.20 -4.38 16 5 C -0.04 -0.64 10.04 22.24 0.22 -0.42 16 6 C -0.25 -5.48 9.04 22.38 0.20 -5.28 16 7 C 0.15 4.43 6.68 22.49 0.15 4.58 16 8 O -0.32 -10.32 9.22 -87.78 -0.81 -11.13 16 9 C 0.06 1.62 4.61 71.98 0.33 1.95 16 10 C 0.07 2.16 3.13 30.60 0.10 2.26 16 11 H 0.10 2.42 7.79 -2.38 -0.02 2.40 16 12 C -0.17 -4.51 9.33 71.98 0.67 -3.84 16 13 O -0.41 -17.10 9.95 -144.34 -1.44 -18.54 16 14 C 0.08 3.76 5.69 71.98 0.41 4.17 16 15 C 0.03 1.53 5.34 29.85 0.16 1.69 16 16 C -0.54 -31.73 9.11 25.60 0.23 -31.50 16 17 H 0.07 3.82 7.74 -2.91 -0.02 3.79 16 18 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 19 N -0.93 -58.98 13.29 21.45 0.28 -58.69 16 20 Si 0.98 44.57 29.54 68.60 2.03 46.60 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 24 C -0.22 -6.60 9.93 22.46 0.22 -6.38 16 25 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 26 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 27 H 0.12 0.93 8.14 -2.39 -0.02 0.92 16 28 H 0.16 1.86 6.29 -2.91 -0.02 1.84 16 29 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 30 H 0.15 2.53 6.29 -2.91 -0.02 2.51 16 31 H 0.11 1.88 7.66 -2.39 -0.02 1.86 16 32 H 0.07 1.75 7.66 -2.39 -0.02 1.73 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.52 7.87 -2.39 -0.02 1.50 16 35 H 0.05 1.55 7.56 -2.38 -0.02 1.53 16 36 H 0.05 1.92 7.87 -2.38 -0.02 1.90 16 37 H 0.05 2.12 8.08 -2.39 -0.02 2.10 16 38 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 39 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 40 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 41 H 0.12 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -76.14 344.82 4.72 -71.41 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 1.00 Total: 10.61 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 4.63 Total: -31.54 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.28 Total: -58.69 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -3.21 Total: -38.38 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -76.14 4.72 -71.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.213 kcal (2) G-P(sol) polarization free energy of solvation -76.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds