Wall clock time and date at job start Tue Mar 31 2020 01:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42900 * 114.00140 * 2 1 4 4 C 1.52999 * 109.46886 * 199.90807 * 3 2 1 5 5 C 1.52997 * 109.47265 * 64.99820 * 4 3 2 6 6 O 1.42900 * 109.47036 * 179.97438 * 5 4 3 7 7 C 1.42901 * 114.00015 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47237 * 30.00044 * 7 6 5 9 9 C 1.50698 * 109.47001 * 270.00339 * 7 6 5 10 10 H 1.08005 * 120.00425 * 328.32488 * 9 7 6 11 11 C 1.37880 * 119.99989 * 148.32800 * 9 7 6 12 12 N 1.31513 * 119.99969 * 8.81022 * 11 9 7 13 13 Si 1.86801 * 120.00015 * 188.81248 * 11 9 7 14 14 H 1.48503 * 109.47062 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47003 * 299.99904 * 13 11 9 16 16 H 1.48495 * 109.47431 * 59.99828 * 13 11 9 17 17 C 1.50699 * 109.47159 * 150.00180 * 7 6 5 18 18 C 1.38233 * 119.99730 * 31.57863 * 17 7 6 19 19 C 1.38240 * 119.99670 * 179.78389 * 18 17 7 20 20 C 1.38230 * 119.99918 * 0.44463 * 19 18 17 21 21 C 1.38238 * 120.00089 * 359.81422 * 20 19 18 22 22 C 1.38229 * 120.00183 * 359.97215 * 21 20 19 23 23 O 1.42899 * 109.47019 * 79.90475 * 3 2 1 24 24 C 1.42902 * 114.00226 * 286.63907 * 23 3 2 25 25 H 1.08999 * 109.47178 * 173.00472 * 1 2 3 26 26 H 1.08995 * 109.46930 * 293.00897 * 1 2 3 27 27 H 1.09000 * 109.46727 * 53.00228 * 1 2 3 28 28 H 1.09007 * 109.46887 * 319.90735 * 3 2 1 29 29 H 1.08996 * 109.46868 * 304.99479 * 4 3 2 30 30 H 1.08997 * 109.46747 * 185.00160 * 4 3 2 31 31 H 1.09008 * 109.46796 * 59.99962 * 5 4 3 32 32 H 1.08998 * 109.47033 * 300.00091 * 5 4 3 33 33 H 0.96996 * 119.99958 * 354.53833 * 12 11 9 34 34 H 1.07997 * 120.00457 * 0.02562 * 18 17 7 35 35 H 1.07999 * 120.00212 * 180.27302 * 19 18 17 36 36 H 1.07998 * 120.00295 * 179.82877 * 20 19 18 37 37 H 1.07996 * 119.99662 * 179.97438 * 21 20 19 38 38 H 1.07993 * 120.00188 * 180.02562 * 22 21 20 39 39 H 1.09009 * 109.46710 * 319.37110 * 24 23 3 40 40 H 1.08992 * 109.47350 * 79.37213 * 24 23 3 41 41 H 1.08999 * 109.47013 * 199.37720 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.4568 1.2196 -0.4912 5 6 3.4731 0.7692 -1.9533 6 8 4.8240 0.6897 -2.4122 7 6 4.9519 0.2760 -3.7740 8 1 4.0764 0.6009 -4.3362 9 6 5.0588 -1.2260 -3.8348 10 1 5.5302 -1.7670 -3.0276 11 6 4.5548 -1.9096 -4.9210 12 7 4.1388 -1.2483 -5.9789 13 14 4.4627 -3.7751 -4.8898 14 1 3.8866 -4.2637 -6.1684 15 1 5.8269 -4.3351 -4.7149 16 1 3.6009 -4.2094 -3.7612 17 6 6.1902 0.8924 -4.3721 18 6 7.2932 1.1386 -3.5761 19 6 8.4307 1.6999 -4.1257 20 6 8.4618 2.0234 -5.4693 21 6 7.3568 1.7821 -6.2641 22 6 6.2210 1.2167 -5.7156 23 8 1.9884 1.8366 1.3264 24 6 0.6912 2.2405 1.7694 25 1 -0.3633 -1.0200 -0.1252 26 1 -0.3633 0.4017 0.9459 27 1 -0.3633 0.6184 -0.8208 28 1 1.4399 1.9571 -0.6619 29 1 4.0048 0.4999 0.1168 30 1 3.9276 2.1991 -0.4074 31 1 2.9250 1.4891 -2.5613 32 1 3.0022 -0.2102 -2.0370 33 1 4.1123 -0.2788 -5.9653 34 1 7.2677 0.8889 -2.5257 35 1 9.2940 1.8883 -3.5048 36 1 9.3494 2.4645 -5.8981 37 1 7.3811 2.0352 -7.3137 38 1 5.3579 1.0278 -6.3366 39 1 0.1670 2.7378 0.9531 40 1 0.1253 1.3637 2.0839 41 1 0.7918 2.9284 2.6089 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224343444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:18 Heat of formation + Delta-G solvation = -118.345630 kcal Electronic energy + Delta-G solvation = -22047.352106 eV Core-core repulsion = 18699.571772 eV Total energy + Delta-G solvation = -3347.780334 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.33935 -38.56750 -36.72948 -35.96615 -33.50393 -31.99561 -30.33519 -30.03383 -27.76887 -26.16679 -26.07680 -24.15239 -22.98466 -21.74374 -21.15635 -20.34308 -17.47181 -17.40262 -17.14661 -16.28412 -15.77545 -15.31526 -14.77519 -14.49102 -14.40679 -13.96820 -13.78535 -13.60998 -13.48262 -13.27226 -13.01791 -12.59386 -12.46771 -11.91428 -11.83526 -11.63980 -11.37256 -11.18560 -10.92209 -10.82194 -10.41794 -10.25641 -10.17559 -10.06371 -9.84629 -9.72180 -9.51750 -8.56276 -8.39705 -8.10511 -7.59724 -6.50023 -4.24310 2.22438 2.25068 3.40013 3.41699 3.43459 3.60427 3.77157 4.41945 4.59410 4.69392 4.82743 4.92748 5.02116 5.18770 5.22158 5.26335 5.33382 5.48478 5.57727 5.61804 5.67669 5.69431 5.78573 5.87425 6.00604 6.19811 6.34899 6.39402 6.45455 6.57900 6.72511 6.88723 6.89968 6.96642 7.07535 7.25446 7.35793 7.57971 7.82525 7.92311 8.09578 8.56007 8.69158 9.47286 10.84022 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.013722 B = 0.005161 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.084056 B = 5423.990833 C = 6968.574431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.385 6.385 3 C 0.249 3.751 4 C -0.102 4.102 5 C 0.082 3.918 6 O -0.393 6.393 7 C 0.231 3.769 8 H 0.031 0.969 9 C -0.601 4.601 10 H 0.061 0.939 11 C 0.027 3.973 12 N -0.900 5.900 13 Si 1.068 2.932 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.285 1.285 17 C -0.035 4.035 18 C -0.108 4.108 19 C -0.130 4.130 20 C -0.151 4.151 21 C -0.125 4.125 22 C -0.118 4.118 23 O -0.393 6.393 24 C 0.022 3.978 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.029 0.971 32 H 0.060 0.940 33 H 0.269 0.731 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.042 0.958 40 H 0.050 0.950 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 7.120 8.419 12.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.305 6.305 3 C 0.154 3.846 4 C -0.139 4.139 5 C 0.004 3.996 6 O -0.313 6.313 7 C 0.175 3.825 8 H 0.049 0.951 9 C -0.638 4.638 10 H 0.080 0.920 11 C -0.179 4.179 12 N -0.536 5.536 13 Si 0.896 3.104 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.036 4.036 18 C -0.127 4.127 19 C -0.149 4.149 20 C -0.169 4.169 21 C -0.143 4.143 22 C -0.137 4.137 23 O -0.313 6.313 24 C -0.074 4.074 25 H 0.107 0.893 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.990 5.694 7.709 10.805 hybrid contribution -0.272 1.395 0.580 1.535 sum -5.262 7.089 8.289 12.110 Atomic orbital electron populations 1.23124 0.81496 1.03443 1.00088 1.88133 1.19486 1.29248 1.93604 1.23394 0.95849 0.82294 0.83100 1.21324 0.91932 1.03877 0.96770 1.21960 0.85911 1.00034 0.91680 1.87657 1.23961 1.89077 1.30559 1.18816 0.91048 0.93906 0.78731 0.95134 1.22282 1.42078 0.90429 1.09052 0.92030 1.25906 0.92971 1.07343 0.91650 1.70888 1.44918 1.10043 1.27788 0.83545 0.76842 0.73890 0.76143 1.20644 1.21199 1.21097 1.20430 0.97459 0.92141 0.93559 1.20898 0.92668 0.99112 0.99980 1.21002 0.97821 1.00889 0.95142 1.20852 0.98147 1.03558 0.94364 1.20948 0.93851 1.00630 0.98881 1.21016 0.98634 0.98951 0.95077 1.88037 1.29238 1.80599 1.33460 1.23028 0.85280 0.99337 0.99775 0.89325 0.93425 0.93864 0.92614 0.89465 0.89484 0.95234 0.92197 0.91820 0.86358 0.87320 0.87451 0.87201 0.86194 0.93887 0.93163 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 10.44 101.05 1.06 1.22 16 2 O -0.38 -6.07 10.12 -59.04 -0.60 -6.67 16 3 C 0.25 3.67 2.86 37.16 0.11 3.77 16 4 C -0.10 -1.69 5.66 -26.73 -0.15 -1.84 16 5 C 0.08 1.63 5.64 37.16 0.21 1.84 16 6 O -0.39 -9.17 9.01 -35.23 -0.32 -9.49 16 7 C 0.23 5.86 2.14 -29.04 -0.06 5.80 16 8 H 0.03 0.81 6.30 -51.93 -0.33 0.49 16 9 C -0.60 -16.74 8.61 -34.44 -0.30 -17.04 16 10 H 0.06 1.77 7.83 -52.48 -0.41 1.36 16 11 C 0.03 0.74 5.44 -17.82 -0.10 0.65 16 12 N -0.90 -25.77 13.62 55.43 0.76 -25.02 16 13 Si 1.07 24.91 29.91 -169.99 -5.08 19.83 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C -0.04 -0.84 5.01 -104.62 -0.52 -1.36 16 18 C -0.11 -2.37 9.35 -39.58 -0.37 -2.74 16 19 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 20 C -0.15 -2.73 10.05 -39.58 -0.40 -3.13 16 21 C -0.12 -2.43 10.05 -39.58 -0.40 -2.83 16 22 C -0.12 -2.67 9.44 -39.58 -0.37 -3.04 16 23 O -0.39 -5.56 10.61 -59.04 -0.63 -6.19 16 24 C 0.02 0.22 9.86 101.05 1.00 1.21 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.45 4.87 -51.93 -0.25 0.20 16 27 H 0.04 0.44 7.95 -51.93 -0.41 0.03 16 28 H 0.06 0.73 7.49 -51.93 -0.39 0.34 16 29 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.03 0.55 8.08 -51.92 -0.42 0.13 16 32 H 0.06 1.31 7.82 -51.93 -0.41 0.90 16 33 H 0.27 7.53 4.51 -40.82 -0.18 7.35 16 34 H 0.12 2.56 7.53 -52.49 -0.40 2.16 16 35 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.12 2.78 6.20 -52.49 -0.33 2.46 16 39 H 0.04 0.36 7.75 -51.92 -0.40 -0.04 16 40 H 0.05 0.46 5.82 -51.93 -0.30 0.15 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 338.07 15.07 5.09 5.09 Total: -1.00 -31.33 338.07 -7.46 -38.79 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.98 Total: 4.01 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -0.70 Total: -20.36 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.76 Total: -25.02 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.54 Total: -22.35 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.83 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.33 -7.46 -38.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224343444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.559 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds