Wall clock time and date at job start Tue Mar 31 2020 01:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42900 * 114.00140 * 2 1 4 4 C 1.52999 * 109.46886 * 199.90807 * 3 2 1 5 5 C 1.52997 * 109.47265 * 64.99820 * 4 3 2 6 6 O 1.42900 * 109.47036 * 179.97438 * 5 4 3 7 7 C 1.42901 * 114.00015 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47237 * 30.00044 * 7 6 5 9 9 C 1.50698 * 109.47001 * 270.00339 * 7 6 5 10 10 H 1.08005 * 120.00425 * 328.32488 * 9 7 6 11 11 C 1.37880 * 119.99989 * 148.32800 * 9 7 6 12 12 N 1.31513 * 119.99969 * 8.81022 * 11 9 7 13 13 Si 1.86801 * 120.00015 * 188.81248 * 11 9 7 14 14 H 1.48503 * 109.47062 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47003 * 299.99904 * 13 11 9 16 16 H 1.48495 * 109.47431 * 59.99828 * 13 11 9 17 17 C 1.50699 * 109.47159 * 150.00180 * 7 6 5 18 18 C 1.38233 * 119.99730 * 31.57863 * 17 7 6 19 19 C 1.38240 * 119.99670 * 179.78389 * 18 17 7 20 20 C 1.38230 * 119.99918 * 0.44463 * 19 18 17 21 21 C 1.38238 * 120.00089 * 359.81422 * 20 19 18 22 22 C 1.38229 * 120.00183 * 359.97215 * 21 20 19 23 23 O 1.42899 * 109.47019 * 79.90475 * 3 2 1 24 24 C 1.42902 * 114.00226 * 286.63907 * 23 3 2 25 25 H 1.08999 * 109.47178 * 173.00472 * 1 2 3 26 26 H 1.08995 * 109.46930 * 293.00897 * 1 2 3 27 27 H 1.09000 * 109.46727 * 53.00228 * 1 2 3 28 28 H 1.09007 * 109.46887 * 319.90735 * 3 2 1 29 29 H 1.08996 * 109.46868 * 304.99479 * 4 3 2 30 30 H 1.08997 * 109.46747 * 185.00160 * 4 3 2 31 31 H 1.09008 * 109.46796 * 59.99962 * 5 4 3 32 32 H 1.08998 * 109.47033 * 300.00091 * 5 4 3 33 33 H 0.96996 * 119.99958 * 354.53833 * 12 11 9 34 34 H 1.07997 * 120.00457 * 0.02562 * 18 17 7 35 35 H 1.07999 * 120.00212 * 180.27302 * 19 18 17 36 36 H 1.07998 * 120.00295 * 179.82877 * 20 19 18 37 37 H 1.07996 * 119.99662 * 179.97438 * 21 20 19 38 38 H 1.07993 * 120.00188 * 180.02562 * 22 21 20 39 39 H 1.09009 * 109.46710 * 319.37110 * 24 23 3 40 40 H 1.08992 * 109.47350 * 79.37213 * 24 23 3 41 41 H 1.08999 * 109.47013 * 199.37720 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.4568 1.2196 -0.4912 5 6 3.4731 0.7692 -1.9533 6 8 4.8240 0.6897 -2.4122 7 6 4.9519 0.2760 -3.7740 8 1 4.0764 0.6009 -4.3362 9 6 5.0588 -1.2260 -3.8348 10 1 5.5302 -1.7670 -3.0276 11 6 4.5548 -1.9096 -4.9210 12 7 4.1388 -1.2483 -5.9789 13 14 4.4627 -3.7751 -4.8898 14 1 3.8866 -4.2637 -6.1684 15 1 5.8269 -4.3351 -4.7149 16 1 3.6009 -4.2094 -3.7612 17 6 6.1902 0.8924 -4.3721 18 6 7.2932 1.1386 -3.5761 19 6 8.4307 1.6999 -4.1257 20 6 8.4618 2.0234 -5.4693 21 6 7.3568 1.7821 -6.2641 22 6 6.2210 1.2167 -5.7156 23 8 1.9884 1.8366 1.3264 24 6 0.6912 2.2405 1.7694 25 1 -0.3633 -1.0200 -0.1252 26 1 -0.3633 0.4017 0.9459 27 1 -0.3633 0.6184 -0.8208 28 1 1.4399 1.9571 -0.6619 29 1 4.0048 0.4999 0.1168 30 1 3.9276 2.1991 -0.4074 31 1 2.9250 1.4891 -2.5613 32 1 3.0022 -0.2102 -2.0370 33 1 4.1123 -0.2788 -5.9653 34 1 7.2677 0.8889 -2.5257 35 1 9.2940 1.8883 -3.5048 36 1 9.3494 2.4645 -5.8981 37 1 7.3811 2.0352 -7.3137 38 1 5.3579 1.0278 -6.3366 39 1 0.1670 2.7378 0.9531 40 1 0.1253 1.3637 2.0839 41 1 0.7918 2.9284 2.6089 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224343444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:18 Heat of formation + Delta-G solvation = -137.262538 kcal Electronic energy + Delta-G solvation = -22048.172404 eV Core-core repulsion = 18699.571772 eV Total energy + Delta-G solvation = -3348.600633 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49364 -40.19085 -38.45104 -37.02046 -35.41972 -33.55121 -31.96796 -31.63097 -28.87730 -28.02585 -26.95332 -25.61686 -24.80092 -23.29951 -22.59614 -22.04548 -19.28670 -18.52211 -18.42374 -17.84972 -17.27891 -16.69832 -16.36970 -16.09001 -15.66607 -15.38102 -15.29321 -15.00436 -14.87249 -14.73057 -14.51703 -14.09500 -13.77834 -13.50242 -13.34990 -13.03498 -12.85435 -12.65480 -12.37333 -12.27497 -12.04985 -11.99586 -11.85115 -11.54392 -11.42853 -11.09759 -10.78117 -10.64626 -10.23497 -9.70669 -9.38569 -8.67192 -6.44471 0.61251 0.64366 1.49342 1.56228 1.76578 2.26964 2.49582 2.72821 2.97945 3.14535 3.23053 3.62628 3.94070 4.09125 4.11887 4.16381 4.21824 4.28558 4.31261 4.34718 4.37820 4.42016 4.48137 4.54631 4.66582 4.68134 4.84263 4.88661 4.91877 4.93989 5.03535 5.24281 5.28716 5.67642 5.71190 5.81653 5.91136 5.96322 5.98534 6.04131 6.25865 6.48746 6.61262 7.34877 8.65797 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.013722 B = 0.005161 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.084056 B = 5423.990833 C = 6968.574431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.418 6.418 3 C 0.254 3.746 4 C -0.093 4.093 5 C 0.082 3.918 6 O -0.402 6.402 7 C 0.236 3.764 8 H 0.007 0.993 9 C -0.618 4.618 10 H 0.042 0.958 11 C -0.015 4.015 12 N -0.918 5.918 13 Si 1.109 2.891 14 H -0.276 1.276 15 H -0.275 1.275 16 H -0.273 1.273 17 C -0.067 4.067 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.137 4.137 21 C -0.124 4.124 22 C -0.141 4.141 23 O -0.412 6.412 24 C 0.013 3.987 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.039 0.961 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.110 0.890 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 8.143 8.638 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.339 6.339 3 C 0.159 3.841 4 C -0.130 4.130 5 C 0.005 3.995 6 O -0.322 6.322 7 C 0.180 3.820 8 H 0.025 0.975 9 C -0.655 4.655 10 H 0.061 0.939 11 C -0.215 4.215 12 N -0.556 5.556 13 Si 0.930 3.070 14 H -0.201 1.201 15 H -0.200 1.200 16 H -0.198 1.198 17 C -0.068 4.068 18 C -0.144 4.144 19 C -0.141 4.141 20 C -0.155 4.155 21 C -0.142 4.142 22 C -0.160 4.160 23 O -0.333 6.333 24 C -0.083 4.083 25 H 0.113 0.887 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.128 0.872 35 H 0.165 0.835 36 H 0.172 0.828 37 H 0.158 0.842 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.060 6.741 7.948 11.185 hybrid contribution -0.562 1.188 0.562 1.430 sum -4.622 7.929 8.511 12.517 Atomic orbital electron populations 1.23367 0.79382 1.04397 1.01754 1.88082 1.21966 1.29994 1.93895 1.23203 0.94392 0.82515 0.84027 1.21203 0.94028 1.03826 0.93964 1.22051 0.84363 0.99045 0.94076 1.87630 1.25953 1.88885 1.29696 1.18624 0.91237 0.92947 0.79213 0.97534 1.22452 1.42324 0.92120 1.08620 0.93918 1.27142 0.92241 1.10948 0.91188 1.70955 1.46285 1.09920 1.28407 0.83039 0.77612 0.69643 0.76658 1.20123 1.20009 1.19793 1.20381 0.97412 0.94503 0.94503 1.20965 0.93474 1.00344 0.99612 1.21415 0.97600 0.98884 0.96150 1.21372 0.98884 1.01515 0.93737 1.21319 0.93005 0.99236 1.00632 1.21026 0.99636 1.00736 0.94557 1.87988 1.31812 1.80668 1.32859 1.23306 0.83744 1.00218 1.00995 0.88747 0.91281 0.92754 0.90759 0.91020 0.88194 0.94241 0.94807 0.92502 0.87208 0.83536 0.82830 0.84221 0.88171 0.92229 0.92462 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 10.44 113.37 1.18 1.32 16 2 O -0.42 -13.27 10.12 -126.21 -1.28 -14.54 16 3 C 0.25 7.40 2.86 71.98 0.21 7.61 16 4 C -0.09 -3.17 5.66 30.59 0.17 -3.00 16 5 C 0.08 3.42 5.64 71.98 0.41 3.83 16 6 O -0.40 -19.74 9.01 -148.98 -1.34 -21.08 16 7 C 0.24 12.64 2.14 29.10 0.06 12.70 16 8 H 0.01 0.39 6.30 -2.39 -0.02 0.38 16 9 C -0.62 -36.00 8.61 25.60 0.22 -35.78 16 10 H 0.04 2.57 7.83 -2.91 -0.02 2.55 16 11 C -0.01 -0.83 5.44 84.66 0.46 -0.37 16 12 N -0.92 -54.42 13.62 21.45 0.29 -54.13 16 13 Si 1.11 51.01 29.91 68.60 2.05 53.06 16 14 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 C -0.07 -3.31 5.01 -19.87 -0.10 -3.41 16 18 C -0.13 -5.48 9.35 22.27 0.21 -5.27 16 19 C -0.12 -4.27 10.05 22.27 0.22 -4.05 16 20 C -0.14 -4.43 10.05 22.27 0.22 -4.20 16 21 C -0.12 -4.57 10.05 22.27 0.22 -4.34 16 22 C -0.14 -6.47 9.44 22.27 0.21 -6.26 16 23 O -0.41 -11.22 10.61 -126.21 -1.34 -12.56 16 24 C 0.01 0.22 9.86 113.37 1.12 1.34 16 25 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 1.18 4.87 -2.39 -0.01 1.17 16 27 H 0.05 1.04 7.95 -2.39 -0.02 1.02 16 28 H 0.08 1.87 7.49 -2.38 -0.02 1.85 16 29 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.10 3.10 8.14 -2.39 -0.02 3.09 16 31 H 0.04 1.55 8.08 -2.38 -0.02 1.53 16 32 H 0.03 1.57 7.82 -2.39 -0.02 1.55 16 33 H 0.26 15.51 4.51 -92.71 -0.42 15.09 16 34 H 0.11 4.85 7.53 -2.91 -0.02 4.83 16 35 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 36 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 37 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 38 H 0.10 4.89 6.20 -2.91 -0.02 4.87 16 39 H 0.06 0.85 7.75 -2.38 -0.02 0.83 16 40 H 0.06 0.91 5.82 -2.39 -0.01 0.90 16 41 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -70.67 338.07 4.56 -66.10 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 1.36 Total: 23.04 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 4.82 Total: -39.90 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.29 Total: -54.13 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -3.96 Total: -48.18 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.05 Total: 53.06 kcal Total: -70.67 4.56 -66.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224343444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.159 kcal (2) G-P(sol) polarization free energy of solvation -70.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds