Wall clock time and date at job start Tue Mar 31 2020 01:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99879 * 2 1 4 4 C 1.53012 * 109.46793 * 202.53959 * 3 2 1 5 5 C 1.52995 * 109.46934 * 65.00186 * 4 3 2 6 6 O 1.42895 * 109.47114 * 179.97438 * 5 4 3 7 7 C 1.42901 * 114.00299 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46843 * 329.99917 * 7 6 5 9 9 C 1.50702 * 109.47147 * 89.99821 * 7 6 5 10 10 H 1.07993 * 119.99559 * 54.86224 * 9 7 6 11 11 C 1.37872 * 119.99734 * 234.86036 * 9 7 6 12 12 N 1.31519 * 119.99417 * 183.02849 * 11 9 7 13 13 Si 1.86794 * 120.00491 * 3.03186 * 11 9 7 14 14 H 1.48503 * 109.47398 * 84.60703 * 13 11 9 15 15 H 1.48500 * 109.47610 * 204.60790 * 13 11 9 16 16 H 1.48499 * 109.46912 * 324.60891 * 13 11 9 17 17 C 1.50701 * 109.47144 * 210.00200 * 7 6 5 18 18 C 1.38231 * 119.99928 * 324.50501 * 17 7 6 19 19 C 1.38233 * 120.00199 * 179.81392 * 18 17 7 20 20 C 1.38241 * 119.99612 * 0.39652 * 19 18 17 21 21 C 1.38227 * 120.00149 * 359.85948 * 20 19 18 22 22 C 1.38233 * 119.99970 * 359.95636 * 21 20 19 23 23 O 1.42897 * 109.47152 * 82.54218 * 3 2 1 24 24 C 1.42892 * 114.00124 * 286.75691 * 23 3 2 25 25 H 1.09003 * 109.46719 * 65.33096 * 1 2 3 26 26 H 1.09003 * 109.47239 * 185.33384 * 1 2 3 27 27 H 1.09002 * 109.47128 * 305.32840 * 1 2 3 28 28 H 1.08996 * 109.47188 * 322.53882 * 3 2 1 29 29 H 1.09001 * 109.46768 * 304.99676 * 4 3 2 30 30 H 1.08997 * 109.46668 * 185.00072 * 4 3 2 31 31 H 1.08996 * 109.47172 * 59.99510 * 5 4 3 32 32 H 1.09005 * 109.47241 * 299.99790 * 5 4 3 33 33 H 0.97006 * 119.99550 * 179.97438 * 12 11 9 34 34 H 1.08003 * 120.00132 * 0.02562 * 18 17 7 35 35 H 1.07997 * 120.00426 * 180.23539 * 19 18 17 36 36 H 1.08006 * 119.99823 * 179.83299 * 20 19 18 37 37 H 1.07997 * 120.00157 * 179.97438 * 21 20 19 38 38 H 1.08005 * 120.00435 * 180.02562 * 22 21 20 39 39 H 1.09000 * 109.47254 * 75.07849 * 24 23 3 40 40 H 1.09004 * 109.47375 * 195.08369 * 24 23 3 41 41 H 1.09002 * 109.47427 * 315.07969 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4348 1.2294 -0.5530 5 6 3.3895 0.8065 -2.0226 6 8 4.7199 0.7361 -2.5393 7 6 4.7904 0.3469 -3.9125 8 1 3.9496 -0.3051 -4.1489 9 6 4.7357 1.5739 -4.7858 10 1 5.4437 2.3754 -4.6357 11 6 3.7817 1.6730 -5.7763 12 7 3.7712 2.7163 -6.5769 13 14 2.5043 0.3257 -5.9810 14 1 1.3721 0.5716 -5.0519 15 1 2.0055 0.3247 -7.3797 16 1 3.1195 -0.9905 -5.6739 17 6 6.0819 -0.3890 -4.1604 18 6 7.2315 -0.0121 -3.4917 19 6 8.4154 -0.6896 -3.7161 20 6 8.4514 -1.7388 -4.6155 21 6 7.3030 -2.1123 -5.2882 22 6 6.1184 -1.4372 -5.0608 23 8 2.0442 1.8118 1.3359 24 6 0.7666 2.2042 1.8413 25 1 -0.3633 0.4289 -0.9339 26 1 -0.3634 -1.0232 0.0955 27 1 -0.3633 0.5943 0.8384 28 1 1.4128 1.9692 -0.6250 29 1 4.0076 0.4987 0.0180 30 1 3.9091 2.2074 -0.4707 31 1 2.8166 1.5373 -2.5935 32 1 2.9151 -0.1714 -2.1049 33 1 3.1003 2.7859 -7.2741 34 1 7.2040 0.8095 -2.7912 35 1 9.3127 -0.3976 -3.1908 36 1 9.3770 -2.2664 -4.7929 37 1 7.3313 -2.9317 -5.9911 38 1 5.2210 -1.7293 -5.5860 39 1 0.1866 1.3161 2.0922 40 1 0.9010 2.8147 2.7344 41 1 0.2374 2.7814 1.0831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224343445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:21 Heat of formation + Delta-G solvation = -112.768279 kcal Electronic energy + Delta-G solvation = -22094.173403 eV Core-core repulsion = 18746.634921 eV Total energy + Delta-G solvation = -3347.538482 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.33282 -38.63055 -36.75814 -35.97829 -33.15941 -32.06822 -30.72677 -30.15324 -27.81058 -26.99223 -26.08501 -24.24323 -22.72664 -21.87411 -21.15397 -20.10443 -17.44199 -17.37130 -17.17824 -16.33411 -15.88992 -15.38732 -14.94865 -14.51827 -14.45256 -14.20736 -13.89951 -13.60585 -13.53729 -13.24382 -12.79770 -12.70814 -12.59949 -12.27582 -11.81968 -11.66128 -11.45336 -11.36915 -11.09808 -10.98145 -10.58193 -10.42843 -10.25875 -10.02109 -9.86075 -9.78875 -9.44350 -8.79492 -8.47625 -8.20689 -7.78051 -6.27758 -4.29845 2.10670 2.14753 3.10573 3.18302 3.20896 3.42948 3.77096 4.19974 4.49225 4.67005 4.81415 4.93325 5.05969 5.11623 5.22373 5.24865 5.33821 5.48277 5.54034 5.58743 5.60320 5.65433 5.71371 5.84362 6.05396 6.07907 6.24556 6.33061 6.43132 6.46699 6.56605 6.73936 6.80550 6.99217 7.04550 7.14888 7.25107 7.39325 7.47773 7.74952 8.15725 8.44195 8.86153 9.33768 10.84662 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.014544 B = 0.005271 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.739811 B = 5310.756110 C = 6340.161059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.389 6.389 3 C 0.246 3.754 4 C -0.100 4.100 5 C 0.077 3.923 6 O -0.391 6.391 7 C 0.210 3.790 8 H 0.035 0.965 9 C -0.520 4.520 10 H 0.083 0.917 11 C 0.079 3.921 12 N -0.883 5.883 13 Si 0.864 3.136 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.261 1.261 17 C -0.032 4.032 18 C -0.101 4.101 19 C -0.127 4.127 20 C -0.147 4.147 21 C -0.124 4.124 22 C -0.126 4.126 23 O -0.391 6.391 24 C 0.021 3.979 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.268 0.732 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.312 -5.307 10.766 12.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.310 6.310 3 C 0.151 3.849 4 C -0.138 4.138 5 C -0.001 4.001 6 O -0.311 6.311 7 C 0.155 3.845 8 H 0.053 0.947 9 C -0.557 4.557 10 H 0.101 0.899 11 C -0.125 4.125 12 N -0.520 5.520 13 Si 0.691 3.309 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.186 1.186 17 C -0.033 4.033 18 C -0.119 4.119 19 C -0.145 4.145 20 C -0.165 4.165 21 C -0.142 4.142 22 C -0.144 4.144 23 O -0.311 6.311 24 C -0.075 4.075 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.965 -5.316 10.801 12.674 hybrid contribution -1.538 -0.388 -0.647 1.713 sum -5.502 -5.704 10.154 12.881 Atomic orbital electron populations 1.23153 0.81540 1.03305 1.00481 1.88076 1.19502 1.29681 1.93723 1.23400 0.96034 0.82432 0.82986 1.21323 0.92247 1.04400 0.95806 1.21979 0.86807 0.99411 0.91871 1.87755 1.24809 1.90144 1.28439 1.19159 0.90883 0.94141 0.80366 0.94707 1.21300 1.16875 1.02572 1.14950 0.89919 1.25093 0.96969 0.95366 0.95115 1.69890 1.34849 1.28817 1.18414 0.87077 0.82438 0.83288 0.78099 1.19699 1.20757 1.18592 1.20177 0.96585 0.92392 0.94120 1.20950 0.91834 0.99520 0.99592 1.21055 0.97676 0.96780 0.98984 1.20889 0.97694 0.98899 0.98995 1.20921 0.93095 1.00086 1.00119 1.20926 0.97971 0.96336 0.99197 1.88036 1.29621 1.81556 1.31931 1.23018 0.85864 0.99097 0.99490 0.93703 0.89504 0.93166 0.92276 0.89796 0.88868 0.93370 0.94122 0.92228 0.85941 0.87032 0.87233 0.87046 0.86889 0.93293 0.89671 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 10.66 101.05 1.08 1.20 16 2 O -0.39 -5.92 10.11 -59.04 -0.60 -6.52 16 3 C 0.25 3.69 2.85 37.16 0.11 3.79 16 4 C -0.10 -1.67 5.66 -26.73 -0.15 -1.83 16 5 C 0.08 1.52 5.64 37.16 0.21 1.73 16 6 O -0.39 -8.91 9.14 -35.23 -0.32 -9.23 16 7 C 0.21 5.09 2.28 -29.03 -0.07 5.02 16 8 H 0.04 0.85 4.11 -51.93 -0.21 0.63 16 9 C -0.52 -14.42 9.18 -34.44 -0.32 -14.74 16 10 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 11 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 12 N -0.88 -26.03 13.96 55.43 0.77 -25.26 16 13 Si 0.86 20.45 27.18 -169.99 -4.62 15.83 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.26 -5.87 5.82 56.52 0.33 -5.54 16 17 C -0.03 -0.73 4.98 -104.62 -0.52 -1.25 16 18 C -0.10 -2.09 9.35 -39.59 -0.37 -2.46 16 19 C -0.13 -2.25 10.05 -39.58 -0.40 -2.64 16 20 C -0.15 -2.46 10.05 -39.58 -0.40 -2.85 16 21 C -0.12 -2.20 10.05 -39.59 -0.40 -2.60 16 22 C -0.13 -2.61 9.68 -39.58 -0.38 -3.00 16 23 O -0.39 -5.61 10.61 -59.04 -0.63 -6.23 16 24 C 0.02 0.22 9.80 101.05 0.99 1.21 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.46 4.46 -51.93 -0.23 0.23 16 28 H 0.06 0.83 7.63 -51.93 -0.40 0.43 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.79 7.77 -51.93 -0.40 0.39 16 33 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.12 2.52 7.64 -52.48 -0.40 2.12 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.11 2.30 7.41 -52.48 -0.39 1.91 16 39 H 0.05 0.45 5.90 -51.93 -0.31 0.14 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.04 0.39 7.84 -51.93 -0.41 -0.02 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -31.10 338.87 -7.18 -38.28 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.18 Total: 4.34 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -0.72 Total: -16.31 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.77 Total: -25.26 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -1.54 Total: -21.99 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.62 Total: 15.83 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.10 -7.18 -38.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224343445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.487 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds