Wall clock time and date at job start Tue Mar 31 2020 01:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99879 * 2 1 4 4 C 1.53012 * 109.46793 * 202.53959 * 3 2 1 5 5 C 1.52995 * 109.46934 * 65.00186 * 4 3 2 6 6 O 1.42895 * 109.47114 * 179.97438 * 5 4 3 7 7 C 1.42901 * 114.00299 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46843 * 329.99917 * 7 6 5 9 9 C 1.50702 * 109.47147 * 89.99821 * 7 6 5 10 10 H 1.07993 * 119.99559 * 54.86224 * 9 7 6 11 11 C 1.37872 * 119.99734 * 234.86036 * 9 7 6 12 12 N 1.31519 * 119.99417 * 183.02849 * 11 9 7 13 13 Si 1.86794 * 120.00491 * 3.03186 * 11 9 7 14 14 H 1.48503 * 109.47398 * 84.60703 * 13 11 9 15 15 H 1.48500 * 109.47610 * 204.60790 * 13 11 9 16 16 H 1.48499 * 109.46912 * 324.60891 * 13 11 9 17 17 C 1.50701 * 109.47144 * 210.00200 * 7 6 5 18 18 C 1.38231 * 119.99928 * 324.50501 * 17 7 6 19 19 C 1.38233 * 120.00199 * 179.81392 * 18 17 7 20 20 C 1.38241 * 119.99612 * 0.39652 * 19 18 17 21 21 C 1.38227 * 120.00149 * 359.85948 * 20 19 18 22 22 C 1.38233 * 119.99970 * 359.95636 * 21 20 19 23 23 O 1.42897 * 109.47152 * 82.54218 * 3 2 1 24 24 C 1.42892 * 114.00124 * 286.75691 * 23 3 2 25 25 H 1.09003 * 109.46719 * 65.33096 * 1 2 3 26 26 H 1.09003 * 109.47239 * 185.33384 * 1 2 3 27 27 H 1.09002 * 109.47128 * 305.32840 * 1 2 3 28 28 H 1.08996 * 109.47188 * 322.53882 * 3 2 1 29 29 H 1.09001 * 109.46768 * 304.99676 * 4 3 2 30 30 H 1.08997 * 109.46668 * 185.00072 * 4 3 2 31 31 H 1.08996 * 109.47172 * 59.99510 * 5 4 3 32 32 H 1.09005 * 109.47241 * 299.99790 * 5 4 3 33 33 H 0.97006 * 119.99550 * 179.97438 * 12 11 9 34 34 H 1.08003 * 120.00132 * 0.02562 * 18 17 7 35 35 H 1.07997 * 120.00426 * 180.23539 * 19 18 17 36 36 H 1.08006 * 119.99823 * 179.83299 * 20 19 18 37 37 H 1.07997 * 120.00157 * 179.97438 * 21 20 19 38 38 H 1.08005 * 120.00435 * 180.02562 * 22 21 20 39 39 H 1.09000 * 109.47254 * 75.07849 * 24 23 3 40 40 H 1.09004 * 109.47375 * 195.08369 * 24 23 3 41 41 H 1.09002 * 109.47427 * 315.07969 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4348 1.2294 -0.5530 5 6 3.3895 0.8065 -2.0226 6 8 4.7199 0.7361 -2.5393 7 6 4.7904 0.3469 -3.9125 8 1 3.9496 -0.3051 -4.1489 9 6 4.7357 1.5739 -4.7858 10 1 5.4437 2.3754 -4.6357 11 6 3.7817 1.6730 -5.7763 12 7 3.7712 2.7163 -6.5769 13 14 2.5043 0.3257 -5.9810 14 1 1.3721 0.5716 -5.0519 15 1 2.0055 0.3247 -7.3797 16 1 3.1195 -0.9905 -5.6739 17 6 6.0819 -0.3890 -4.1604 18 6 7.2315 -0.0121 -3.4917 19 6 8.4154 -0.6896 -3.7161 20 6 8.4514 -1.7388 -4.6155 21 6 7.3030 -2.1123 -5.2882 22 6 6.1184 -1.4372 -5.0608 23 8 2.0442 1.8118 1.3359 24 6 0.7666 2.2042 1.8413 25 1 -0.3633 0.4289 -0.9339 26 1 -0.3634 -1.0232 0.0955 27 1 -0.3633 0.5943 0.8384 28 1 1.4128 1.9692 -0.6250 29 1 4.0076 0.4987 0.0180 30 1 3.9091 2.2074 -0.4707 31 1 2.8166 1.5373 -2.5935 32 1 2.9151 -0.1714 -2.1049 33 1 3.1003 2.7859 -7.2741 34 1 7.2040 0.8095 -2.7912 35 1 9.3127 -0.3976 -3.1908 36 1 9.3770 -2.2664 -4.7929 37 1 7.3313 -2.9317 -5.9911 38 1 5.2210 -1.7293 -5.5860 39 1 0.1866 1.3161 2.0922 40 1 0.9010 2.8147 2.7344 41 1 0.2374 2.7814 1.0831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224343445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:20 Heat of formation + Delta-G solvation = -132.551021 kcal Electronic energy + Delta-G solvation = -22095.031247 eV Core-core repulsion = 18746.634921 eV Total energy + Delta-G solvation = -3348.396326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.46960 -40.14585 -38.42378 -37.01848 -35.04859 -33.72444 -32.25121 -31.61883 -29.13783 -28.58212 -26.94752 -25.63151 -24.45436 -23.33017 -22.55839 -21.74648 -19.32462 -18.48908 -18.45559 -17.79037 -17.43400 -16.68915 -16.59644 -16.00905 -15.86809 -15.40113 -15.25545 -14.88383 -14.79664 -14.70106 -14.52707 -14.13640 -14.01753 -13.50970 -13.34532 -13.23303 -12.91899 -12.87546 -12.43954 -12.31228 -12.08660 -12.03558 -11.83205 -11.77077 -11.27840 -11.05391 -10.84538 -10.78533 -10.25906 -9.68328 -9.39837 -8.42352 -6.50707 0.61537 0.65881 1.23439 1.24542 1.34300 2.19948 2.27636 2.72356 2.87321 3.11723 3.26679 3.64910 3.96844 4.10725 4.15785 4.18459 4.23386 4.30244 4.33295 4.37739 4.40030 4.41490 4.50836 4.52924 4.65021 4.68979 4.86462 4.87415 4.91161 4.95363 5.04374 5.23212 5.30967 5.37537 5.69982 5.74324 5.90191 5.98291 6.01570 6.07736 6.27640 6.50321 6.67406 7.18592 8.74291 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.014544 B = 0.005271 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.739811 B = 5310.756110 C = 6340.161059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.413 6.413 3 C 0.252 3.748 4 C -0.094 4.094 5 C 0.075 3.925 6 O -0.402 6.402 7 C 0.218 3.782 8 H 0.036 0.964 9 C -0.527 4.527 10 H 0.032 0.968 11 C 0.027 3.973 12 N -0.932 5.932 13 Si 0.923 3.077 14 H -0.257 1.257 15 H -0.274 1.274 16 H -0.243 1.243 17 C -0.070 4.070 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.135 4.135 21 C -0.120 4.120 22 C -0.146 4.146 23 O -0.410 6.410 24 C 0.012 3.988 25 H 0.047 0.953 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.271 0.729 34 H 0.108 0.892 35 H 0.144 0.856 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.111 0.889 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 -7.745 11.379 14.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.334 6.334 3 C 0.157 3.843 4 C -0.131 4.131 5 C -0.002 4.002 6 O -0.322 6.322 7 C 0.161 3.839 8 H 0.053 0.947 9 C -0.565 4.565 10 H 0.050 0.950 11 C -0.172 4.172 12 N -0.570 5.570 13 Si 0.745 3.255 14 H -0.181 1.181 15 H -0.200 1.200 16 H -0.167 1.167 17 C -0.070 4.070 18 C -0.141 4.141 19 C -0.142 4.142 20 C -0.153 4.153 21 C -0.138 4.138 22 C -0.164 4.164 23 O -0.331 6.331 24 C -0.083 4.083 25 H 0.066 0.934 26 H 0.121 0.879 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.162 0.838 36 H 0.172 0.828 37 H 0.166 0.834 38 H 0.129 0.871 39 H 0.078 0.922 40 H 0.122 0.878 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.062 -7.758 11.440 14.407 hybrid contribution -1.411 0.398 -0.753 1.648 sum -5.473 -7.360 10.687 14.083 Atomic orbital electron populations 1.23409 0.79491 1.04872 1.01514 1.88029 1.21817 1.29650 1.93924 1.23146 0.94644 0.82857 0.83663 1.21200 0.94185 1.04066 0.93671 1.22110 0.85321 0.99288 0.93494 1.87731 1.26586 1.90160 1.27690 1.18977 0.92303 0.92528 0.80048 0.94652 1.21380 1.15947 1.03063 1.16100 0.94991 1.25899 0.99016 0.97834 0.94494 1.70032 1.36265 1.31198 1.19552 0.86126 0.79879 0.80846 0.78634 1.18115 1.19977 1.16650 1.20201 0.96239 0.94236 0.96357 1.20997 0.92941 1.00076 1.00071 1.21427 0.97436 0.96325 0.98965 1.21418 0.99023 0.97821 0.97021 1.21353 0.92097 1.00177 1.00146 1.21087 0.99503 0.96637 0.99196 1.87990 1.32102 1.81704 1.31352 1.23294 0.84491 1.00099 1.00440 0.93422 0.87930 0.91238 0.91474 0.90021 0.89024 0.94856 0.93608 0.91945 0.87416 0.83833 0.82837 0.83441 0.87124 0.92156 0.87806 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 10.66 113.37 1.21 1.26 16 2 O -0.41 -12.12 10.11 -126.21 -1.28 -13.39 16 3 C 0.25 7.40 2.85 71.99 0.21 7.61 16 4 C -0.09 -3.19 5.66 30.60 0.17 -3.01 16 5 C 0.07 3.04 5.64 71.98 0.41 3.45 16 6 O -0.40 -19.05 9.14 -148.98 -1.36 -20.41 16 7 C 0.22 10.88 2.28 29.10 0.07 10.95 16 8 H 0.04 1.74 4.11 -2.39 -0.01 1.73 16 9 C -0.53 -30.87 9.18 25.60 0.23 -30.64 16 10 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 11 C 0.03 1.57 5.47 84.65 0.46 2.03 16 12 N -0.93 -57.22 13.96 21.45 0.30 -56.92 16 13 Si 0.92 42.43 27.18 68.60 1.86 44.30 16 14 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.24 -10.36 5.82 99.48 0.58 -9.78 16 17 C -0.07 -3.20 4.98 -19.87 -0.10 -3.30 16 18 C -0.12 -5.13 9.35 22.27 0.21 -4.93 16 19 C -0.12 -4.10 10.05 22.27 0.22 -3.87 16 20 C -0.14 -3.98 10.05 22.27 0.22 -3.76 16 21 C -0.12 -3.87 10.05 22.27 0.22 -3.65 16 22 C -0.15 -5.92 9.68 22.27 0.22 -5.70 16 23 O -0.41 -11.34 10.61 -126.21 -1.34 -12.68 16 24 C 0.01 0.22 9.80 113.37 1.11 1.33 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.07 1.12 4.46 -2.39 -0.01 1.11 16 28 H 0.07 1.84 7.63 -2.39 -0.02 1.82 16 29 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.80 7.77 -2.38 -0.02 1.78 16 33 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 34 H 0.11 4.67 7.64 -2.91 -0.02 4.65 16 35 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 36 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 37 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 38 H 0.11 4.40 7.41 -2.91 -0.02 4.38 16 39 H 0.06 0.95 5.90 -2.39 -0.01 0.94 16 40 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 0.88 7.84 -2.39 -0.02 0.86 16 Total: -1.00 -71.06 338.87 3.93 -67.13 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.88 Total: 24.21 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: 4.86 Total: -32.23 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.30 Total: -56.92 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -3.98 Total: -46.49 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.86 Total: 44.30 kcal Total: -71.06 3.93 -67.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224343445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.419 kcal (2) G-P(sol) polarization free energy of solvation -71.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds