Wall clock time and date at job start Tue Mar 31 2020 01:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35897 * 117.00481 * 180.02562 * 3 2 1 5 5 C 1.38802 * 120.02194 * 359.97438 * 4 3 2 6 6 C 1.38150 * 120.05462 * 179.97438 * 5 4 3 7 7 C 1.38205 * 120.10676 * 0.04701 * 6 5 4 8 8 C 1.50695 * 119.97064 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47018 * 144.99743 * 8 7 6 10 10 C 1.53002 * 109.47450 * 265.00105 * 8 7 6 11 11 O 1.42898 * 109.47369 * 25.00235 * 8 7 6 12 12 C 1.34924 * 117.00686 * 149.99964 * 11 8 7 13 13 H 1.08002 * 119.99473 * 359.97438 * 12 11 8 14 14 C 1.38629 * 120.00652 * 180.02562 * 12 11 8 15 15 N 1.31583 * 120.00044 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00327 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46647 * 90.00004 * 16 14 12 18 18 H 1.48493 * 109.47397 * 209.99626 * 16 14 12 19 19 H 1.48493 * 109.47049 * 330.00354 * 16 14 12 20 20 C 1.38753 * 120.05671 * 359.95481 * 7 6 5 21 21 O 1.35891 * 120.02872 * 180.02562 * 20 7 6 22 22 C 1.42899 * 117.00306 * 179.97438 * 21 20 7 23 23 C 1.52997 * 109.47278 * 180.02562 * 22 21 20 24 24 C 1.38607 * 120.03444 * 179.72224 * 4 3 2 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 30 30 H 1.07999 * 119.97286 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.94668 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.46705 * 299.99989 * 10 8 7 33 33 H 1.09002 * 109.46926 * 60.00191 * 10 8 7 34 34 H 1.09000 * 109.47486 * 179.97438 * 10 8 7 35 35 H 0.96998 * 120.00467 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.46946 * 300.00185 * 22 21 20 37 37 H 1.08998 * 109.46709 * 59.99726 * 22 21 20 38 38 H 1.09005 * 109.46979 * 299.99792 * 23 22 21 39 39 H 1.08994 * 109.47367 * 60.00215 * 23 22 21 40 40 H 1.09002 * 109.46737 * 180.02562 * 23 22 21 41 41 H 1.08005 * 120.04688 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1996 0.4250 -0.0005 6 6 5.5693 0.6053 -0.0016 7 6 6.1006 1.8811 -0.0017 8 6 7.5951 2.0742 -0.0023 9 1 7.8473 2.9557 -0.5919 10 6 8.0855 2.2642 1.4345 11 8 8.2238 0.9244 -0.5721 12 6 9.3937 1.1211 -1.2148 13 1 9.8132 2.1142 -1.2808 14 6 10.0569 0.0489 -1.7912 15 7 9.5456 -1.1609 -1.7113 16 14 11.6763 0.3214 -2.6816 17 1 12.7995 0.1794 -1.7205 18 1 11.8213 -0.6843 -3.7644 19 1 11.6956 1.6858 -3.2673 20 6 5.2591 2.9843 -0.0017 21 8 5.7821 4.2386 -0.0024 22 6 4.8566 5.3274 -0.0029 23 6 5.6255 6.6502 -0.0042 24 6 3.8841 2.8059 -0.0064 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7868 -0.5730 0.0003 31 1 6.2259 -0.2522 -0.0020 32 1 7.6059 3.1412 1.8690 33 1 7.8333 1.3826 2.0239 34 1 9.1665 2.4034 1.4341 35 1 10.0094 -1.9112 -2.1149 36 1 4.2297 5.2710 -0.8928 37 1 4.2299 5.2719 0.8871 38 1 6.2526 6.7068 0.8856 39 1 6.2519 6.7055 -0.8944 40 1 4.9195 7.4807 -0.0041 41 1 3.2273 3.6633 -0.0101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224379950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:17 Heat of formation + Delta-G solvation = -94.816181 kcal Electronic energy + Delta-G solvation = -22086.815858 eV Core-core repulsion = 18740.055838 eV Total energy + Delta-G solvation = -3346.760020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.28998 -38.89813 -37.12464 -35.76267 -32.53970 -31.71178 -31.64221 -30.34725 -29.54930 -27.71946 -24.63982 -23.95507 -23.71379 -22.43454 -21.07323 -20.07106 -18.57550 -17.51981 -16.39906 -16.14698 -15.95141 -15.86931 -15.58081 -14.59586 -14.13442 -13.88935 -13.62576 -13.51813 -13.09850 -13.01444 -12.79532 -12.68092 -12.52517 -12.30392 -11.94716 -11.82864 -11.58713 -11.34309 -11.28509 -11.09034 -10.94133 -10.80976 -10.60291 -10.31248 -10.20226 -9.92071 -9.59197 -9.01044 -8.22438 -7.93793 -7.49767 -5.88849 -3.50471 1.78651 1.82495 3.20094 3.35380 3.38356 3.41994 3.47498 4.14479 4.36659 4.84575 4.89576 4.94008 4.99382 5.11438 5.15984 5.25614 5.31611 5.39391 5.43818 5.44640 5.53502 5.66588 5.74534 5.78411 5.82454 5.88524 5.91866 6.05504 6.15845 6.32329 6.36532 6.47432 6.63814 6.76932 6.94381 7.07349 7.09941 7.19088 7.54044 7.55761 7.76857 8.50552 9.55484 10.24347 11.32517 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.005005 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.087257 B = 5592.948676 C = 7130.223657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.321 6.321 4 C 0.152 3.848 5 C -0.246 4.246 6 C -0.010 4.010 7 C -0.129 4.129 8 C 0.142 3.858 9 H 0.052 0.948 10 C -0.156 4.156 11 O -0.285 6.285 12 C -0.352 4.352 13 H 0.062 0.938 14 C 0.022 3.978 15 N -0.891 5.891 16 Si 0.922 3.078 17 H -0.282 1.282 18 H -0.284 1.284 19 H -0.276 1.276 20 C 0.165 3.835 21 O -0.306 6.306 22 C 0.053 3.947 23 C -0.151 4.151 24 C -0.249 4.249 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.256 0.744 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.213 8.201 4.659 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.107 3.893 5 C -0.265 4.265 6 C -0.028 4.028 7 C -0.130 4.130 8 C 0.082 3.918 9 H 0.070 0.930 10 C -0.214 4.214 11 O -0.200 6.200 12 C -0.432 4.432 13 H 0.080 0.920 14 C -0.175 4.175 15 N -0.535 5.535 16 Si 0.749 3.251 17 H -0.208 1.208 18 H -0.210 1.210 19 H -0.201 1.201 20 C 0.120 3.880 21 O -0.219 6.219 22 C -0.022 4.022 23 C -0.208 4.208 24 C -0.268 4.268 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.217 8.073 4.617 17.834 hybrid contribution 0.689 0.123 -0.503 0.862 sum -14.528 8.196 4.115 17.181 Atomic orbital electron populations 1.21766 0.93100 1.02660 1.03232 1.22744 0.95379 0.82257 1.01734 1.85979 1.19506 1.29124 1.88930 1.18551 0.81737 0.93484 0.95528 1.21164 0.94397 0.97573 1.13371 1.20867 0.93590 0.97343 0.91007 1.19401 0.95883 0.90609 1.07122 1.20266 0.86900 0.91210 0.93390 0.93044 1.22195 1.01132 1.00333 0.97764 1.85619 1.36312 1.27202 1.70886 1.20862 0.97040 0.94057 1.31214 0.91997 1.24889 0.98765 0.94859 0.99034 1.70001 1.38750 0.98495 1.46232 0.86009 0.82334 0.77657 0.79060 1.20812 1.21014 1.20106 1.18385 0.90378 0.84080 0.95182 1.86144 1.35377 1.11950 1.88439 1.22744 0.92363 0.85904 1.01221 1.21763 1.01141 0.94261 1.03684 1.20139 0.93494 0.95877 1.17309 0.90504 0.91741 0.91687 0.91882 0.91985 0.85749 0.83422 0.93557 0.92917 0.92480 0.93374 0.92197 0.92234 0.91524 0.91423 0.90717 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.05 0.60 5.46 37.16 0.20 0.80 16 3 O -0.32 -4.68 10.13 -19.42 -0.20 -4.87 16 4 C 0.15 2.51 6.68 -39.24 -0.26 2.25 16 5 C -0.25 -4.24 9.04 -39.41 -0.36 -4.60 16 6 C -0.01 -0.20 9.34 -39.63 -0.37 -0.57 16 7 C -0.13 -2.71 5.08 -104.45 -0.53 -3.24 16 8 C 0.14 3.31 2.70 -27.88 -0.08 3.23 16 9 H 0.05 1.23 7.34 -51.93 -0.38 0.85 16 10 C -0.16 -3.23 9.51 37.16 0.35 -2.88 16 11 O -0.29 -8.14 8.26 -16.49 -0.14 -8.28 16 12 C -0.35 -10.42 9.77 30.88 0.30 -10.12 16 13 H 0.06 1.75 7.64 -52.49 -0.40 1.35 16 14 C 0.02 0.65 5.49 -17.51 -0.10 0.56 16 15 N -0.89 -27.85 13.67 55.48 0.76 -27.09 16 16 Si 0.92 22.37 29.55 -169.99 -5.02 17.34 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C 0.17 3.03 6.66 -39.24 -0.26 2.77 16 21 O -0.31 -5.16 9.27 -19.40 -0.18 -5.34 16 22 C 0.05 0.64 5.46 37.16 0.20 0.85 16 23 C -0.15 -1.50 10.28 37.16 0.38 -1.11 16 24 C -0.25 -4.10 8.97 -39.29 -0.35 -4.46 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 29 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 30 H 0.12 1.84 6.29 -52.49 -0.33 1.51 16 31 H 0.15 3.30 7.34 -52.49 -0.39 2.92 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 37 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.13 1.82 6.30 -52.48 -0.33 1.49 16 LS Contribution 344.09 15.07 5.19 5.19 Total: -1.00 -33.67 344.09 -6.43 -40.10 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.36 Total: 0.34 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -0.48 Total: -17.39 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 0.76 Total: -27.09 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.51 Total: -18.49 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.67 -6.43 -40.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.713 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds