Wall clock time and date at job start Tue Mar 31 2020 01:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35897 * 117.00481 * 180.02562 * 3 2 1 5 5 C 1.38802 * 120.02194 * 359.97438 * 4 3 2 6 6 C 1.38150 * 120.05462 * 179.97438 * 5 4 3 7 7 C 1.38205 * 120.10676 * 0.04701 * 6 5 4 8 8 C 1.50695 * 119.97064 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47018 * 144.99743 * 8 7 6 10 10 C 1.53002 * 109.47450 * 265.00105 * 8 7 6 11 11 O 1.42898 * 109.47369 * 25.00235 * 8 7 6 12 12 C 1.34924 * 117.00686 * 149.99964 * 11 8 7 13 13 H 1.08002 * 119.99473 * 359.97438 * 12 11 8 14 14 C 1.38629 * 120.00652 * 180.02562 * 12 11 8 15 15 N 1.31583 * 120.00044 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00327 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46647 * 90.00004 * 16 14 12 18 18 H 1.48493 * 109.47397 * 209.99626 * 16 14 12 19 19 H 1.48493 * 109.47049 * 330.00354 * 16 14 12 20 20 C 1.38753 * 120.05671 * 359.95481 * 7 6 5 21 21 O 1.35891 * 120.02872 * 180.02562 * 20 7 6 22 22 C 1.42899 * 117.00306 * 179.97438 * 21 20 7 23 23 C 1.52997 * 109.47278 * 180.02562 * 22 21 20 24 24 C 1.38607 * 120.03444 * 179.72224 * 4 3 2 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 30 30 H 1.07999 * 119.97286 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.94668 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.46705 * 299.99989 * 10 8 7 33 33 H 1.09002 * 109.46926 * 60.00191 * 10 8 7 34 34 H 1.09000 * 109.47486 * 179.97438 * 10 8 7 35 35 H 0.96998 * 120.00467 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.46946 * 300.00185 * 22 21 20 37 37 H 1.08998 * 109.46709 * 59.99726 * 22 21 20 38 38 H 1.09005 * 109.46979 * 299.99792 * 23 22 21 39 39 H 1.08994 * 109.47367 * 60.00215 * 23 22 21 40 40 H 1.09002 * 109.46737 * 180.02562 * 23 22 21 41 41 H 1.08005 * 120.04688 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1996 0.4250 -0.0005 6 6 5.5693 0.6053 -0.0016 7 6 6.1006 1.8811 -0.0017 8 6 7.5951 2.0742 -0.0023 9 1 7.8473 2.9557 -0.5919 10 6 8.0855 2.2642 1.4345 11 8 8.2238 0.9244 -0.5721 12 6 9.3937 1.1211 -1.2148 13 1 9.8132 2.1142 -1.2808 14 6 10.0569 0.0489 -1.7912 15 7 9.5456 -1.1609 -1.7113 16 14 11.6763 0.3214 -2.6816 17 1 12.7995 0.1794 -1.7205 18 1 11.8213 -0.6843 -3.7644 19 1 11.6956 1.6858 -3.2673 20 6 5.2591 2.9843 -0.0017 21 8 5.7821 4.2386 -0.0024 22 6 4.8566 5.3274 -0.0029 23 6 5.6255 6.6502 -0.0042 24 6 3.8841 2.8059 -0.0064 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7868 -0.5730 0.0003 31 1 6.2259 -0.2522 -0.0020 32 1 7.6059 3.1412 1.8690 33 1 7.8333 1.3826 2.0239 34 1 9.1665 2.4034 1.4341 35 1 10.0094 -1.9112 -2.1149 36 1 4.2297 5.2710 -0.8928 37 1 4.2299 5.2719 0.8871 38 1 6.2526 6.7068 0.8856 39 1 6.2519 6.7055 -0.8944 40 1 4.9195 7.4807 -0.0041 41 1 3.2273 3.6633 -0.0101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224379950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:16 Heat of formation + Delta-G solvation = -115.730962 kcal Electronic energy + Delta-G solvation = -22087.722791 eV Core-core repulsion = 18740.055838 eV Total energy + Delta-G solvation = -3347.666953 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.61501 -40.08660 -38.83449 -37.34427 -34.32330 -33.13127 -32.64643 -31.95656 -30.84190 -29.20473 -26.80454 -25.11560 -24.82735 -23.81536 -22.23598 -21.64889 -19.89495 -19.54581 -17.76867 -17.45830 -17.22579 -17.07020 -16.87460 -16.40417 -15.82276 -15.34783 -15.14590 -15.05664 -14.36929 -14.21970 -14.06329 -13.79812 -13.66633 -13.38676 -13.34529 -13.27633 -12.97627 -12.88809 -12.79574 -12.51431 -12.37461 -12.13603 -11.91647 -11.82571 -11.66502 -11.55630 -11.28963 -11.08518 -10.13900 -9.58117 -8.91966 -8.13590 -5.81165 0.36495 0.40625 1.39919 1.46261 1.55126 2.06909 2.34587 2.35393 2.71117 3.19723 3.57586 3.84018 4.00573 4.07010 4.08131 4.08392 4.15926 4.21513 4.29291 4.38250 4.40503 4.44127 4.48167 4.59641 4.70563 4.88133 4.89751 4.93071 4.96189 4.96273 4.99633 5.18071 5.22644 5.24466 5.28675 5.31924 5.42301 5.57152 5.69748 6.26025 6.31505 6.49011 7.29612 8.10547 9.10968 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.005005 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.087257 B = 5592.948676 C = 7130.223657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 O -0.322 6.322 4 C 0.162 3.838 5 C -0.244 4.244 6 C -0.028 4.028 7 C -0.162 4.162 8 C 0.138 3.862 9 H 0.038 0.962 10 C -0.145 4.145 11 O -0.318 6.318 12 C -0.371 4.371 13 H 0.067 0.933 14 C -0.039 4.039 15 N -0.937 5.937 16 Si 1.000 3.000 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.262 1.262 20 C 0.170 3.830 21 O -0.324 6.324 22 C 0.041 3.959 23 C -0.148 4.148 24 C -0.244 4.244 25 H 0.099 0.901 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.259 0.741 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.106 0.894 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.709 9.690 4.626 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 O -0.236 6.236 4 C 0.116 3.884 5 C -0.263 4.263 6 C -0.047 4.047 7 C -0.163 4.163 8 C 0.080 3.920 9 H 0.056 0.944 10 C -0.202 4.202 11 O -0.234 6.234 12 C -0.450 4.450 13 H 0.085 0.915 14 C -0.232 4.232 15 N -0.582 5.582 16 Si 0.823 3.177 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.187 1.187 20 C 0.124 3.876 21 O -0.239 6.239 22 C -0.033 4.033 23 C -0.205 4.205 24 C -0.263 4.263 25 H 0.118 0.882 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.163 0.837 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.738 9.590 4.602 19.832 hybrid contribution 0.973 -0.278 -0.448 1.107 sum -15.765 9.312 4.153 18.775 Atomic orbital electron populations 1.21790 0.90704 1.04261 1.03421 1.23119 0.97289 0.80710 1.02249 1.86006 1.17870 1.31377 1.88308 1.18620 0.82691 0.93195 0.93923 1.21257 0.93034 0.99191 1.12829 1.20623 0.94699 0.96232 0.93105 1.19285 0.94701 0.92047 1.10293 1.20427 0.88573 0.89057 0.93985 0.94446 1.22064 1.00642 1.01205 0.96316 1.85577 1.36325 1.30103 1.71367 1.21315 0.97685 0.94552 1.31402 0.91540 1.26092 1.02955 0.94361 0.99799 1.70177 1.40863 0.99606 1.47571 0.84835 0.76971 0.78194 0.77744 1.19542 1.20370 1.18654 1.18289 0.90700 0.84141 0.94467 1.86132 1.37405 1.12193 1.88121 1.23157 0.92487 0.85120 1.02548 1.21809 1.01604 0.94030 1.03047 1.20397 0.92946 0.96949 1.16019 0.88214 0.91389 0.91643 0.91691 0.91200 0.83678 0.86802 0.90945 0.93413 0.93318 0.93208 0.91143 0.90461 0.91833 0.92407 0.87540 0.82405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 10.28 71.98 0.74 -1.25 16 2 C 0.04 0.81 5.46 71.98 0.39 1.21 16 3 O -0.32 -8.59 10.13 -92.39 -0.94 -9.52 16 4 C 0.16 5.10 6.68 22.49 0.15 5.25 16 5 C -0.24 -8.42 9.04 22.38 0.20 -8.21 16 6 C -0.03 -1.21 9.34 22.24 0.21 -1.00 16 7 C -0.16 -7.05 5.08 -19.75 -0.10 -7.15 16 8 C 0.14 6.74 2.70 29.85 0.08 6.82 16 9 H 0.04 1.88 7.34 -2.39 -0.02 1.87 16 10 C -0.14 -6.16 9.51 71.98 0.68 -5.48 16 11 O -0.32 -19.14 8.26 -81.93 -0.68 -19.81 16 12 C -0.37 -22.69 9.77 67.91 0.66 -22.03 16 13 H 0.07 3.86 7.64 -2.91 -0.02 3.84 16 14 C -0.04 -2.36 5.49 84.82 0.47 -1.90 16 15 N -0.94 -60.51 13.67 21.61 0.30 -60.21 16 16 Si 1.00 46.45 29.55 68.60 2.03 48.47 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 20 C 0.17 6.19 6.66 22.49 0.15 6.34 16 21 O -0.32 -10.72 9.27 -92.32 -0.86 -11.57 16 22 C 0.04 0.91 5.46 71.98 0.39 1.30 16 23 C -0.15 -2.60 10.28 71.98 0.74 -1.86 16 24 C -0.24 -7.61 8.97 22.46 0.20 -7.40 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 1.29 7.66 -2.39 -0.02 1.27 16 29 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 30 H 0.15 4.22 6.29 -2.91 -0.02 4.21 16 31 H 0.11 5.55 7.34 -2.91 -0.02 5.53 16 32 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.07 1.41 7.65 -2.38 -0.02 1.39 16 37 H 0.08 1.44 7.67 -2.39 -0.02 1.42 16 38 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.16 3.93 6.30 -2.91 -0.02 3.91 16 Total: -1.00 -75.36 344.09 5.83 -69.52 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 1.00 Total: 18.49 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 4.97 Total: -35.37 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.30 Total: -60.21 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -2.47 Total: -40.91 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -75.36 5.83 -69.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.207 kcal (2) G-P(sol) polarization free energy of solvation -75.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds