Wall clock time and date at job start Tue Mar 31 2020 01:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42902 * 109.47182 * 2 1 4 4 C 1.35900 * 117.00179 * 180.02562 * 3 2 1 5 5 C 1.38800 * 120.02723 * 0.02562 * 4 3 2 6 6 C 1.38152 * 120.05630 * 179.97438 * 5 4 3 7 7 C 1.38203 * 120.10619 * 359.74036 * 6 5 4 8 8 C 1.50701 * 119.97257 * 180.25385 * 7 6 5 9 9 H 1.08998 * 109.47480 * 215.26033 * 8 7 6 10 10 C 1.53001 * 109.47045 * 95.25543 * 8 7 6 11 11 O 1.42900 * 109.46988 * 335.25743 * 8 7 6 12 12 C 1.34922 * 116.99938 * 209.99806 * 11 8 7 13 13 H 1.07997 * 120.00573 * 0.02562 * 12 11 8 14 14 C 1.38636 * 120.00018 * 180.02562 * 12 11 8 15 15 N 1.31586 * 120.00437 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 120.00299 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46783 * 59.99798 * 16 14 12 18 18 H 1.48500 * 109.47309 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47043 * 300.00536 * 16 14 12 20 20 C 1.38744 * 120.05479 * 0.51495 * 7 6 5 21 21 O 1.35897 * 120.03121 * 179.76371 * 20 7 6 22 22 C 1.42898 * 117.00481 * 179.71939 * 21 20 7 23 23 C 1.52997 * 109.47319 * 180.02562 * 22 21 20 24 24 C 1.38611 * 120.02942 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.47103 * 299.99772 * 1 2 3 26 26 H 1.08995 * 109.47192 * 59.99885 * 1 2 3 27 27 H 1.09005 * 109.47358 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47463 * 239.99539 * 2 1 3 29 29 H 1.09004 * 109.47351 * 119.99864 * 2 1 3 30 30 H 1.07998 * 119.96976 * 359.95420 * 5 4 3 31 31 H 1.07994 * 119.94759 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47382 * 300.00550 * 10 8 7 33 33 H 1.09005 * 109.46795 * 60.00319 * 10 8 7 34 34 H 1.08999 * 109.46926 * 179.97438 * 10 8 7 35 35 H 0.96992 * 120.00416 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47259 * 300.00417 * 22 21 20 37 37 H 1.09001 * 109.47074 * 60.00439 * 22 21 20 38 38 H 1.08996 * 109.47853 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.47153 * 300.00307 * 23 22 21 40 40 H 1.08998 * 109.47533 * 59.99936 * 23 22 21 41 41 H 1.07997 * 120.04977 * 0.04130 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 -0.0005 5 6 4.1996 0.4250 -0.0016 6 6 5.5693 0.6054 -0.0027 7 6 6.1005 1.8812 -0.0081 8 6 7.5951 2.0745 -0.0151 9 1 7.8504 2.9547 0.5749 10 6 8.0777 2.2673 -1.4541 11 8 8.2268 0.9234 0.5489 12 6 9.4001 1.1190 1.1857 13 1 9.8199 2.1118 1.2516 14 6 10.0669 0.0453 1.7555 15 7 9.5552 -1.1644 1.6758 16 14 11.6918 0.3158 2.6366 17 1 11.4903 1.2551 3.7691 18 1 12.1970 -0.9817 3.1527 19 1 12.6798 0.8892 1.6878 20 6 5.2590 2.9843 -0.0017 21 8 5.7819 4.2387 -0.0023 22 6 4.8564 5.3275 -0.0017 23 6 5.6252 6.6503 -0.0030 24 6 3.8840 2.8060 -0.0011 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7868 -0.5729 -0.0012 31 1 6.2260 -0.2520 -0.0039 32 1 7.8223 1.3871 -2.0441 33 1 7.5958 3.1454 -1.8843 34 1 9.1586 2.4075 -1.4591 35 1 10.0215 -1.9155 2.0748 36 1 4.2289 5.2714 -0.8912 37 1 4.2303 5.2716 0.8888 38 1 4.9193 7.4808 -0.0021 39 1 6.2530 6.7066 0.8862 40 1 6.2511 6.7060 -0.8937 41 1 3.2273 3.6633 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224379951.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:20 Heat of formation + Delta-G solvation = -94.725280 kcal Electronic energy + Delta-G solvation = -22086.538956 eV Core-core repulsion = 18739.782877 eV Total energy + Delta-G solvation = -3346.756079 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.28924 -38.89717 -37.12358 -35.76142 -32.53834 -31.71082 -31.64200 -30.34555 -29.54906 -27.72002 -24.63735 -23.95418 -23.71304 -22.43325 -21.07284 -20.06952 -18.57474 -17.51826 -16.39811 -16.14754 -15.95045 -15.86874 -15.57826 -14.59320 -14.13395 -13.89459 -13.62441 -13.51848 -13.09902 -13.01426 -12.79504 -12.68033 -12.52406 -12.29930 -11.94625 -11.82769 -11.58694 -11.34289 -11.28793 -11.08285 -10.93085 -10.80596 -10.59918 -10.33542 -10.20290 -9.92071 -9.58709 -9.01182 -8.22387 -7.93609 -7.49785 -5.88542 -3.50243 1.78710 1.82556 3.20123 3.36392 3.38237 3.40982 3.47517 4.14586 4.36812 4.84574 4.89604 4.94013 4.99408 5.11485 5.15990 5.25650 5.31638 5.39419 5.43893 5.44724 5.53547 5.66600 5.74549 5.78404 5.82484 5.88585 5.91909 6.05524 6.15958 6.32424 6.36645 6.47527 6.63941 6.77045 6.94519 7.07447 7.09996 7.19219 7.54071 7.55519 7.76880 8.50795 9.55667 10.24501 11.32737 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.014200 B = 0.005003 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.403272 B = 5595.068555 C = 7133.901872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.321 6.321 4 C 0.152 3.848 5 C -0.246 4.246 6 C -0.010 4.010 7 C -0.129 4.129 8 C 0.142 3.858 9 H 0.052 0.948 10 C -0.156 4.156 11 O -0.285 6.285 12 C -0.353 4.353 13 H 0.062 0.938 14 C 0.023 3.977 15 N -0.891 5.891 16 Si 0.922 3.078 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.279 1.279 20 C 0.165 3.835 21 O -0.306 6.306 22 C 0.053 3.947 23 C -0.151 4.151 24 C -0.249 4.249 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.257 0.743 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.223 8.181 -4.582 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.107 3.893 5 C -0.265 4.265 6 C -0.028 4.028 7 C -0.130 4.130 8 C 0.082 3.918 9 H 0.070 0.930 10 C -0.214 4.214 11 O -0.200 6.200 12 C -0.433 4.433 13 H 0.080 0.920 14 C -0.175 4.175 15 N -0.535 5.535 16 Si 0.750 3.250 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.205 1.205 20 C 0.120 3.880 21 O -0.219 6.219 22 C -0.022 4.022 23 C -0.209 4.209 24 C -0.268 4.268 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.142 0.858 31 H 0.166 0.834 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.224 8.045 -4.547 17.809 hybrid contribution 0.690 0.136 0.508 0.868 sum -14.534 8.180 -4.038 17.160 Atomic orbital electron populations 1.21766 0.93101 1.02660 1.03231 1.22744 0.95380 0.82258 1.01736 1.85981 1.19505 1.29122 1.88932 1.18553 0.81737 0.93485 0.95523 1.21163 0.94397 0.97573 1.13379 1.20867 0.93584 0.97350 0.90993 1.19402 0.95884 0.90612 1.07129 1.20266 0.86893 0.91191 0.93415 0.93049 1.22194 1.01140 1.00322 0.97757 1.85619 1.35958 1.27127 1.71293 1.20816 0.96761 0.93994 1.31690 0.92049 1.24889 0.98752 0.94843 0.99025 1.69989 1.38779 0.98445 1.46278 0.86088 0.82262 0.77194 0.79500 1.20474 1.20975 1.20452 1.18387 0.90377 0.84078 0.95175 1.86144 1.35376 1.11950 1.88442 1.22743 0.92361 0.85904 1.01220 1.21762 1.01142 0.94262 1.03684 1.20140 0.93493 0.95875 1.17321 0.91693 0.91733 0.90504 0.91982 0.91885 0.85750 0.83412 0.92912 0.93569 0.92482 0.93319 0.92239 0.92193 0.90717 0.91432 0.91518 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.15 0.38 -0.87 16 2 C 0.05 0.60 5.46 37.15 0.20 0.80 16 3 O -0.32 -4.68 10.13 -19.43 -0.20 -4.88 16 4 C 0.15 2.51 6.68 -39.24 -0.26 2.25 16 5 C -0.25 -4.24 9.04 -39.41 -0.36 -4.60 16 6 C -0.01 -0.20 9.34 -39.63 -0.37 -0.57 16 7 C -0.13 -2.71 5.08 -104.45 -0.53 -3.24 16 8 C 0.14 3.31 2.70 -27.88 -0.08 3.23 16 9 H 0.05 1.23 7.35 -51.93 -0.38 0.85 16 10 C -0.16 -3.23 9.51 37.16 0.35 -2.88 16 11 O -0.28 -8.14 8.25 -16.49 -0.14 -8.27 16 12 C -0.35 -10.45 9.77 30.88 0.30 -10.15 16 13 H 0.06 1.73 7.64 -52.49 -0.40 1.33 16 14 C 0.02 0.67 5.49 -17.51 -0.10 0.57 16 15 N -0.89 -27.85 13.68 55.48 0.76 -27.09 16 16 Si 0.92 22.36 29.55 -169.99 -5.02 17.34 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.17 3.04 6.66 -39.24 -0.26 2.78 16 21 O -0.31 -5.16 9.27 -19.42 -0.18 -5.34 16 22 C 0.05 0.65 5.46 37.16 0.20 0.85 16 23 C -0.15 -1.50 10.28 37.16 0.38 -1.11 16 24 C -0.25 -4.11 8.97 -39.29 -0.35 -4.46 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 29 H 0.06 0.68 7.66 -51.93 -0.40 0.29 16 30 H 0.12 1.84 6.29 -52.49 -0.33 1.51 16 31 H 0.15 3.31 7.34 -52.49 -0.39 2.92 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 37 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.13 1.82 6.30 -52.49 -0.33 1.49 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -33.64 344.08 -6.43 -40.07 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.36 Total: 0.39 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -0.48 Total: -17.40 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 0.76 Total: -27.09 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.51 Total: -18.49 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.64 -6.43 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379951.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.652 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds