Wall clock time and date at job start Tue Mar 31 2020 01:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42902 * 109.47182 * 2 1 4 4 C 1.35900 * 117.00179 * 180.02562 * 3 2 1 5 5 C 1.38800 * 120.02723 * 0.02562 * 4 3 2 6 6 C 1.38152 * 120.05630 * 179.97438 * 5 4 3 7 7 C 1.38203 * 120.10619 * 359.74036 * 6 5 4 8 8 C 1.50701 * 119.97257 * 180.25385 * 7 6 5 9 9 H 1.08998 * 109.47480 * 215.26033 * 8 7 6 10 10 C 1.53001 * 109.47045 * 95.25543 * 8 7 6 11 11 O 1.42900 * 109.46988 * 335.25743 * 8 7 6 12 12 C 1.34922 * 116.99938 * 209.99806 * 11 8 7 13 13 H 1.07997 * 120.00573 * 0.02562 * 12 11 8 14 14 C 1.38636 * 120.00018 * 180.02562 * 12 11 8 15 15 N 1.31586 * 120.00437 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 120.00299 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46783 * 59.99798 * 16 14 12 18 18 H 1.48500 * 109.47309 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47043 * 300.00536 * 16 14 12 20 20 C 1.38744 * 120.05479 * 0.51495 * 7 6 5 21 21 O 1.35897 * 120.03121 * 179.76371 * 20 7 6 22 22 C 1.42898 * 117.00481 * 179.71939 * 21 20 7 23 23 C 1.52997 * 109.47319 * 180.02562 * 22 21 20 24 24 C 1.38611 * 120.02942 * 179.97438 * 4 3 2 25 25 H 1.09001 * 109.47103 * 299.99772 * 1 2 3 26 26 H 1.08995 * 109.47192 * 59.99885 * 1 2 3 27 27 H 1.09005 * 109.47358 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47463 * 239.99539 * 2 1 3 29 29 H 1.09004 * 109.47351 * 119.99864 * 2 1 3 30 30 H 1.07998 * 119.96976 * 359.95420 * 5 4 3 31 31 H 1.07994 * 119.94759 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47382 * 300.00550 * 10 8 7 33 33 H 1.09005 * 109.46795 * 60.00319 * 10 8 7 34 34 H 1.08999 * 109.46926 * 179.97438 * 10 8 7 35 35 H 0.96992 * 120.00416 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47259 * 300.00417 * 22 21 20 37 37 H 1.09001 * 109.47074 * 60.00439 * 22 21 20 38 38 H 1.08996 * 109.47853 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.47153 * 300.00307 * 23 22 21 40 40 H 1.08998 * 109.47533 * 59.99936 * 23 22 21 41 41 H 1.07997 * 120.04977 * 0.04130 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 -0.0005 5 6 4.1996 0.4250 -0.0016 6 6 5.5693 0.6054 -0.0027 7 6 6.1005 1.8812 -0.0081 8 6 7.5951 2.0745 -0.0151 9 1 7.8504 2.9547 0.5749 10 6 8.0777 2.2673 -1.4541 11 8 8.2268 0.9234 0.5489 12 6 9.4001 1.1190 1.1857 13 1 9.8199 2.1118 1.2516 14 6 10.0669 0.0453 1.7555 15 7 9.5552 -1.1644 1.6758 16 14 11.6918 0.3158 2.6366 17 1 11.4903 1.2551 3.7691 18 1 12.1970 -0.9817 3.1527 19 1 12.6798 0.8892 1.6878 20 6 5.2590 2.9843 -0.0017 21 8 5.7819 4.2387 -0.0023 22 6 4.8564 5.3275 -0.0017 23 6 5.6252 6.6503 -0.0030 24 6 3.8840 2.8060 -0.0011 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7868 -0.5729 -0.0012 31 1 6.2260 -0.2520 -0.0039 32 1 7.8223 1.3871 -2.0441 33 1 7.5958 3.1454 -1.8843 34 1 9.1586 2.4075 -1.4591 35 1 10.0215 -1.9155 2.0748 36 1 4.2289 5.2714 -0.8912 37 1 4.2303 5.2716 0.8888 38 1 4.9193 7.4808 -0.0021 39 1 6.2530 6.7066 0.8862 40 1 6.2511 6.7060 -0.8937 41 1 3.2273 3.6633 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224379951.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:19 Heat of formation + Delta-G solvation = -115.616776 kcal Electronic energy + Delta-G solvation = -22087.444879 eV Core-core repulsion = 18739.782877 eV Total energy + Delta-G solvation = -3347.662002 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.61460 -40.08581 -38.83326 -37.34341 -34.32135 -33.13053 -32.64632 -31.95578 -30.84192 -29.20604 -26.80102 -25.11525 -24.82673 -23.81442 -22.23583 -21.64777 -19.89407 -19.54406 -17.76634 -17.45776 -17.22571 -17.06880 -16.87402 -16.40225 -15.82586 -15.34983 -15.14505 -15.05598 -14.36930 -14.21295 -14.06333 -13.79799 -13.66654 -13.38686 -13.34652 -13.27640 -12.96994 -12.88386 -12.78386 -12.50774 -12.37368 -12.16905 -11.91480 -11.82366 -11.66191 -11.55265 -11.28827 -11.08662 -10.13614 -9.58109 -8.92021 -8.13253 -5.80933 0.36481 0.40675 1.39929 1.47605 1.54151 2.06923 2.34816 2.35453 2.71153 3.19880 3.57665 3.84049 4.00580 4.07001 4.08181 4.08372 4.15926 4.21537 4.29319 4.38297 4.40514 4.44141 4.48180 4.59639 4.70633 4.88128 4.89738 4.93113 4.96212 4.96288 4.99690 5.18064 5.22591 5.24470 5.28680 5.31924 5.42312 5.57170 5.69807 6.26053 6.31494 6.49001 7.29790 8.10683 9.11057 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.014200 B = 0.005003 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.403272 B = 5595.068555 C = 7133.901872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 O -0.322 6.322 4 C 0.162 3.838 5 C -0.244 4.244 6 C -0.028 4.028 7 C -0.162 4.162 8 C 0.138 3.862 9 H 0.038 0.962 10 C -0.144 4.144 11 O -0.318 6.318 12 C -0.372 4.372 13 H 0.067 0.933 14 C -0.039 4.039 15 N -0.937 5.937 16 Si 1.000 3.000 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.264 1.264 20 C 0.170 3.830 21 O -0.324 6.324 22 C 0.041 3.959 23 C -0.148 4.148 24 C -0.244 4.244 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.146 0.854 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.259 0.741 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.717 9.679 -4.546 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 O -0.236 6.236 4 C 0.116 3.884 5 C -0.263 4.263 6 C -0.047 4.047 7 C -0.163 4.163 8 C 0.080 3.920 9 H 0.056 0.944 10 C -0.202 4.202 11 O -0.234 6.234 12 C -0.451 4.451 13 H 0.085 0.915 14 C -0.232 4.232 15 N -0.582 5.582 16 Si 0.822 3.178 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.189 1.189 20 C 0.124 3.876 21 O -0.239 6.239 22 C -0.033 4.033 23 C -0.205 4.205 24 C -0.263 4.263 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.163 0.837 31 H 0.132 0.868 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.743 9.572 -4.527 19.810 hybrid contribution 0.971 -0.266 0.454 1.105 sum -15.772 9.306 -4.073 18.760 Atomic orbital electron populations 1.21790 0.90703 1.04262 1.03420 1.23119 0.97290 0.80709 1.02250 1.86009 1.17868 1.31376 1.88309 1.18622 0.82691 0.93196 0.93918 1.21256 0.93031 0.99192 1.12834 1.20622 0.94695 0.96239 0.93099 1.19286 0.94700 0.92048 1.10299 1.20428 0.88554 0.89045 0.94019 0.94439 1.22062 1.00645 1.01197 0.96308 1.85578 1.35974 1.30032 1.71772 1.21282 0.97414 0.94522 1.31870 0.91536 1.26095 1.02983 0.94340 0.99757 1.70169 1.40868 0.99542 1.47620 0.84909 0.76941 0.77535 0.78394 1.19212 1.20317 1.18935 1.18291 0.90701 0.84141 0.94462 1.86133 1.37404 1.12191 1.88124 1.23155 0.92487 0.85121 1.02548 1.21808 1.01605 0.94028 1.03050 1.20398 0.92943 0.96945 1.16026 0.91647 0.91384 0.88213 0.91204 0.91688 0.83679 0.86803 0.93409 0.90952 0.93339 0.93203 0.90470 0.91135 0.87542 0.92408 0.91831 0.82403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 10.28 71.98 0.74 -1.25 16 2 C 0.04 0.81 5.46 71.98 0.39 1.21 16 3 O -0.32 -8.59 10.13 -92.43 -0.94 -9.52 16 4 C 0.16 5.10 6.68 22.49 0.15 5.25 16 5 C -0.24 -8.42 9.04 22.38 0.20 -8.22 16 6 C -0.03 -1.21 9.34 22.24 0.21 -1.00 16 7 C -0.16 -7.05 5.08 -19.75 -0.10 -7.15 16 8 C 0.14 6.74 2.70 29.85 0.08 6.82 16 9 H 0.04 1.89 7.35 -2.39 -0.02 1.87 16 10 C -0.14 -6.16 9.51 71.98 0.68 -5.47 16 11 O -0.32 -19.13 8.25 -81.91 -0.68 -19.81 16 12 C -0.37 -22.78 9.77 67.91 0.66 -22.11 16 13 H 0.07 3.86 7.64 -2.91 -0.02 3.83 16 14 C -0.04 -2.34 5.49 84.82 0.47 -1.88 16 15 N -0.94 -60.50 13.68 21.61 0.30 -60.21 16 16 Si 1.00 46.40 29.55 68.60 2.03 48.43 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 20 C 0.17 6.19 6.66 22.49 0.15 6.34 16 21 O -0.32 -10.72 9.27 -92.39 -0.86 -11.58 16 22 C 0.04 0.91 5.46 71.98 0.39 1.30 16 23 C -0.15 -2.60 10.28 71.98 0.74 -1.86 16 24 C -0.24 -7.61 8.97 22.46 0.20 -7.40 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 29 H 0.06 1.29 7.66 -2.39 -0.02 1.27 16 30 H 0.15 4.23 6.29 -2.91 -0.02 4.21 16 31 H 0.11 5.56 7.34 -2.91 -0.02 5.54 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 35 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.08 1.44 7.66 -2.39 -0.02 1.42 16 37 H 0.07 1.41 7.66 -2.39 -0.02 1.39 16 38 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.16 3.92 6.30 -2.91 -0.02 3.91 16 Total: -1.00 -75.32 344.08 5.83 -69.49 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.00 Total: 18.63 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 4.97 Total: -35.43 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.30 Total: -60.21 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -2.47 Total: -40.91 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -75.32 5.83 -69.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379951.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.127 kcal (2) G-P(sol) polarization free energy of solvation -75.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds