Wall clock time and date at job start Tue Mar 31 2020 01:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47430 * 2 1 4 4 C 1.53000 * 109.47517 * 239.99738 * 2 1 3 5 5 O 1.42906 * 109.46919 * 305.00565 * 4 2 1 6 6 C 1.35894 * 116.99700 * 179.97438 * 5 4 2 7 7 C 1.38738 * 120.06018 * 359.72202 * 6 5 4 8 8 C 1.38145 * 119.94486 * 179.74663 * 7 6 5 9 9 C 1.38262 * 120.05441 * 0.50489 * 8 7 6 10 10 C 1.38268 * 120.11417 * 359.77207 * 9 8 7 11 11 C 1.38139 * 120.05613 * 359.97071 * 10 9 8 12 12 O 1.42902 * 109.47072 * 119.99773 * 2 1 3 13 13 C 1.42898 * 114.00186 * 269.99829 * 12 2 1 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 2 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 12 16 16 O 1.42895 * 109.47606 * 180.02562 * 15 14 13 17 17 C 1.34931 * 117.00664 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99609 * 0.02562 * 17 16 15 19 19 C 1.38632 * 120.00700 * 179.97438 * 17 16 15 20 20 N 1.31586 * 119.99463 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00314 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46969 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46981 * 120.00122 * 21 19 17 24 24 H 1.48501 * 109.46995 * 239.99955 * 21 19 17 25 25 H 1.09000 * 109.46986 * 59.99995 * 1 2 3 26 26 H 1.08997 * 109.46833 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46890 * 300.00205 * 1 2 3 28 28 H 1.09005 * 109.46634 * 64.99485 * 4 2 1 29 29 H 1.08994 * 109.47543 * 185.00067 * 4 2 1 30 30 H 1.07999 * 120.02542 * 359.97438 * 7 6 5 31 31 H 1.08002 * 119.97258 * 180.27297 * 8 7 6 32 32 H 1.08005 * 119.94268 * 179.74404 * 9 8 7 33 33 H 1.08006 * 119.97181 * 179.97438 * 10 9 8 34 34 H 1.07996 * 120.03073 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.47259 * 300.00293 * 13 12 2 36 36 H 1.09001 * 109.47074 * 60.00315 * 13 12 2 37 37 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 38 38 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 39 39 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 40 40 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 41 41 H 0.97001 * 120.00104 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3094 6 6 1.8227 -2.8086 -2.3662 7 6 2.6945 -2.3204 -3.3286 8 6 3.0553 -3.1154 -4.3992 9 6 2.5402 -4.3930 -4.5175 10 6 1.6667 -4.8800 -3.5627 11 6 1.3069 -4.0909 -2.4875 12 8 2.0063 -0.6736 1.1668 13 6 2.2001 0.1830 2.2941 14 6 2.7091 -0.6405 3.4789 15 6 2.9160 0.2764 4.6860 16 8 3.3920 -0.4925 5.7923 17 6 3.6264 0.1707 6.9438 18 1 3.4529 1.2353 6.9987 19 6 4.0888 -0.5144 8.0567 20 7 4.2996 -1.8116 7.9900 21 14 4.4139 0.4039 9.6505 22 1 4.1009 1.8436 9.4649 23 1 3.5564 -0.1538 10.7270 24 1 5.8424 0.2519 10.0269 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.7517 -0.1584 -2.1369 29 1 3.1264 -0.7995 -1.2055 30 1 3.0936 -1.3208 -3.2390 31 1 3.7374 -2.7373 -5.1463 32 1 2.8203 -5.0116 -5.3574 33 1 1.2653 -5.8782 -3.6576 34 1 0.6242 -4.4715 -1.7422 35 1 2.9320 0.9514 2.0450 36 1 1.2538 0.6547 2.5589 37 1 1.9776 -1.4092 3.7281 38 1 3.6555 -1.1119 3.2139 39 1 3.6473 1.0454 4.4370 40 1 1.9694 0.7475 4.9509 41 1 4.6236 -2.2910 8.7685 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224380968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:39 Heat of formation + Delta-G solvation = -102.336713 kcal Electronic energy + Delta-G solvation = -20710.057768 eV Core-core repulsion = 17362.971633 eV Total energy + Delta-G solvation = -3347.086135 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.34173 -38.56681 -37.31810 -36.29370 -33.21367 -31.87370 -31.22603 -30.67927 -29.80841 -27.14330 -25.35580 -23.72548 -22.99265 -22.55084 -21.17050 -20.68657 -18.57932 -17.48028 -16.97899 -16.25871 -16.06311 -15.84167 -15.55504 -15.05519 -14.93720 -14.37546 -14.16646 -13.86432 -13.64157 -13.28507 -13.08319 -12.90406 -12.56383 -12.48137 -12.06544 -11.82096 -11.53879 -11.25658 -11.22419 -11.12562 -10.97974 -10.80843 -10.72738 -10.58072 -10.13298 -9.52462 -9.42435 -9.24118 -9.13282 -8.39298 -7.94907 -5.92808 -3.57126 1.10408 1.23762 2.99163 3.32073 3.34185 3.39550 3.53115 3.58205 4.33698 4.46022 4.62256 4.68285 4.74298 4.86414 4.92790 4.97716 5.14405 5.20672 5.29209 5.33912 5.38479 5.40473 5.43487 5.47316 5.67525 5.74021 5.77034 5.92763 6.06131 6.08674 6.13991 6.18605 6.29908 6.32637 6.54757 6.62053 6.81181 6.83445 7.21837 7.32529 7.49653 8.45102 9.50148 10.19215 11.28486 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.028996 B = 0.002385 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.428797 B =11736.012579 C =12288.928882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.088 3.912 3 H 0.079 0.921 4 C 0.064 3.936 5 O -0.298 6.298 6 C 0.135 3.865 7 C -0.213 4.213 8 C -0.081 4.081 9 C -0.165 4.165 10 C -0.081 4.081 11 C -0.153 4.153 12 O -0.371 6.371 13 C 0.067 3.933 14 C -0.113 4.113 15 C 0.078 3.922 16 O -0.295 6.295 17 C -0.361 4.361 18 H 0.063 0.937 19 C 0.021 3.979 20 N -0.888 5.888 21 Si 0.926 3.074 22 H -0.275 1.275 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.177 1.197 -26.346 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.030 3.970 3 H 0.097 0.903 4 C -0.012 4.012 5 O -0.211 6.211 6 C 0.089 3.911 7 C -0.232 4.232 8 C -0.099 4.099 9 C -0.183 4.183 10 C -0.099 4.099 11 C -0.172 4.172 12 O -0.291 6.291 13 C -0.010 4.010 14 C -0.151 4.151 15 C 0.000 4.000 16 O -0.211 6.211 17 C -0.440 4.440 18 H 0.081 0.919 19 C -0.177 4.177 20 N -0.531 5.531 21 Si 0.753 3.247 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.188 0.647 -26.079 26.811 hybrid contribution 0.270 1.173 0.673 1.379 sum -5.918 1.820 -25.407 26.150 Atomic orbital electron populations 1.22218 0.95185 1.03744 1.01956 1.22115 0.94769 0.95038 0.85085 0.90330 1.22985 0.98628 0.82061 0.97513 1.86176 1.66504 1.26087 1.42369 1.19109 0.93826 0.91288 0.86880 1.21278 1.03043 1.01644 0.97224 1.20938 0.98213 0.93934 0.96848 1.21047 1.00338 0.96480 1.00434 1.20982 0.96508 0.99216 0.93185 1.20503 1.03932 0.92243 1.00487 1.88042 1.86209 1.35179 1.19631 1.22494 0.99201 0.92932 0.86330 1.21319 1.02651 0.99075 0.92050 1.21903 0.96561 0.93100 0.88391 1.85625 1.84186 1.33487 1.17768 1.20854 1.43440 0.91914 0.87800 0.91940 1.24984 0.98843 0.95785 0.98080 1.70043 1.46919 1.06676 1.29469 0.85878 0.77961 0.78719 0.82094 1.19947 1.20855 1.20855 0.91958 0.90762 0.92059 0.90875 0.91138 0.85600 0.85962 0.86074 0.85441 0.85097 0.93416 0.93318 0.90729 0.90819 0.96012 0.95969 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.33 37.16 0.35 -1.41 16 2 C 0.09 0.96 3.13 -26.73 -0.08 0.88 16 3 H 0.08 0.68 7.79 -51.93 -0.40 0.28 16 4 C 0.06 0.64 4.61 37.16 0.17 0.81 16 5 O -0.30 -3.74 9.22 -24.25 -0.22 -3.96 16 6 C 0.13 1.55 6.69 -39.21 -0.26 1.29 16 7 C -0.21 -2.08 9.04 -39.43 -0.36 -2.44 16 8 C -0.08 -0.70 10.04 -39.61 -0.40 -1.10 16 9 C -0.16 -1.38 10.04 -39.56 -0.40 -1.78 16 10 C -0.08 -0.72 10.04 -39.61 -0.40 -1.12 16 11 C -0.15 -1.64 9.99 -39.43 -0.39 -2.03 16 12 O -0.37 -5.57 9.95 -40.08 -0.40 -5.97 16 13 C 0.07 0.99 5.75 37.16 0.21 1.21 16 14 C -0.11 -2.18 5.95 -26.74 -0.16 -2.34 16 15 C 0.08 1.77 6.02 37.15 0.22 1.99 16 16 O -0.30 -8.80 9.78 -16.51 -0.16 -8.96 16 17 C -0.36 -10.91 9.89 30.88 0.31 -10.61 16 18 H 0.06 1.77 7.77 -52.49 -0.41 1.36 16 19 C 0.02 0.64 5.49 -17.51 -0.10 0.54 16 20 N -0.89 -28.57 13.68 55.48 0.76 -27.81 16 21 Si 0.93 22.42 29.55 -169.99 -5.02 17.40 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.87 7.56 -51.93 -0.39 0.47 16 27 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 28 H 0.07 0.54 7.65 -51.93 -0.40 0.14 16 29 H 0.07 0.69 7.68 -51.93 -0.40 0.30 16 30 H 0.13 1.01 6.30 -52.49 -0.33 0.68 16 31 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 32 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 34 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 36 H 0.05 0.66 7.87 -51.93 -0.41 0.26 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -35.61 349.33 -7.58 -43.19 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -6.51 Total: -3.06 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -1.28 Total: -16.09 kcal Atomic # 7 Polarization: -28.57 SS G_CDS: 0.76 Total: -27.81 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.78 Total: -18.89 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.61 -7.58 -43.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224380968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.146 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds