Wall clock time and date at job start Tue Mar 31 2020 01:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47430 * 2 1 4 4 C 1.53000 * 109.47517 * 239.99738 * 2 1 3 5 5 O 1.42906 * 109.46919 * 305.00565 * 4 2 1 6 6 C 1.35894 * 116.99700 * 179.97438 * 5 4 2 7 7 C 1.38738 * 120.06018 * 359.72202 * 6 5 4 8 8 C 1.38145 * 119.94486 * 179.74663 * 7 6 5 9 9 C 1.38262 * 120.05441 * 0.50489 * 8 7 6 10 10 C 1.38268 * 120.11417 * 359.77207 * 9 8 7 11 11 C 1.38139 * 120.05613 * 359.97071 * 10 9 8 12 12 O 1.42902 * 109.47072 * 119.99773 * 2 1 3 13 13 C 1.42898 * 114.00186 * 269.99829 * 12 2 1 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 2 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 12 16 16 O 1.42895 * 109.47606 * 180.02562 * 15 14 13 17 17 C 1.34931 * 117.00664 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99609 * 0.02562 * 17 16 15 19 19 C 1.38632 * 120.00700 * 179.97438 * 17 16 15 20 20 N 1.31586 * 119.99463 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00314 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46969 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46981 * 120.00122 * 21 19 17 24 24 H 1.48501 * 109.46995 * 239.99955 * 21 19 17 25 25 H 1.09000 * 109.46986 * 59.99995 * 1 2 3 26 26 H 1.08997 * 109.46833 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46890 * 300.00205 * 1 2 3 28 28 H 1.09005 * 109.46634 * 64.99485 * 4 2 1 29 29 H 1.08994 * 109.47543 * 185.00067 * 4 2 1 30 30 H 1.07999 * 120.02542 * 359.97438 * 7 6 5 31 31 H 1.08002 * 119.97258 * 180.27297 * 8 7 6 32 32 H 1.08005 * 119.94268 * 179.74404 * 9 8 7 33 33 H 1.08006 * 119.97181 * 179.97438 * 10 9 8 34 34 H 1.07996 * 120.03073 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.47259 * 300.00293 * 13 12 2 36 36 H 1.09001 * 109.47074 * 60.00315 * 13 12 2 37 37 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 38 38 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 39 39 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 40 40 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 41 41 H 0.97001 * 120.00104 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3094 6 6 1.8227 -2.8086 -2.3662 7 6 2.6945 -2.3204 -3.3286 8 6 3.0553 -3.1154 -4.3992 9 6 2.5402 -4.3930 -4.5175 10 6 1.6667 -4.8800 -3.5627 11 6 1.3069 -4.0909 -2.4875 12 8 2.0063 -0.6736 1.1668 13 6 2.2001 0.1830 2.2941 14 6 2.7091 -0.6405 3.4789 15 6 2.9160 0.2764 4.6860 16 8 3.3920 -0.4925 5.7923 17 6 3.6264 0.1707 6.9438 18 1 3.4529 1.2353 6.9987 19 6 4.0888 -0.5144 8.0567 20 7 4.2996 -1.8116 7.9900 21 14 4.4139 0.4039 9.6505 22 1 4.1009 1.8436 9.4649 23 1 3.5564 -0.1538 10.7270 24 1 5.8424 0.2519 10.0269 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.7517 -0.1584 -2.1369 29 1 3.1264 -0.7995 -1.2055 30 1 3.0936 -1.3208 -3.2390 31 1 3.7374 -2.7373 -5.1463 32 1 2.8203 -5.0116 -5.3574 33 1 1.2653 -5.8782 -3.6576 34 1 0.6242 -4.4715 -1.7422 35 1 2.9320 0.9514 2.0450 36 1 1.2538 0.6547 2.5589 37 1 1.9776 -1.4092 3.7281 38 1 3.6555 -1.1119 3.2139 39 1 3.6473 1.0454 4.4370 40 1 1.9694 0.7475 4.9509 41 1 4.6236 -2.2910 8.7685 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224380968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:38 Heat of formation + Delta-G solvation = -125.047831 kcal Electronic energy + Delta-G solvation = -20711.042596 eV Core-core repulsion = 17362.971633 eV Total energy + Delta-G solvation = -3348.070963 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10516 -39.55319 -38.48632 -38.00222 -34.66688 -33.64804 -32.26132 -31.83656 -30.55004 -27.93752 -27.23574 -25.56190 -23.75147 -23.28660 -22.52596 -21.72164 -19.68606 -19.32416 -17.99940 -17.35512 -17.16263 -16.87022 -16.76525 -16.47522 -15.90349 -15.63975 -15.61861 -15.09555 -14.85719 -14.32223 -14.24847 -13.98762 -13.69013 -13.50901 -13.46206 -13.05437 -12.81538 -12.50545 -12.46460 -12.34300 -12.33903 -12.00661 -11.86940 -11.76697 -11.70812 -11.39461 -11.26317 -10.55071 -10.18515 -9.93954 -9.13728 -8.19948 -5.91154 0.40716 0.51734 1.39316 1.46071 1.56944 2.25087 2.28011 2.54419 2.86872 3.13172 3.65008 3.84822 3.91811 3.95392 3.99859 4.02880 4.16600 4.26891 4.28556 4.32173 4.35997 4.48572 4.52119 4.54572 4.57683 4.62001 4.73388 4.78172 4.84121 4.92707 5.09922 5.14193 5.15124 5.28632 5.30941 5.39698 5.49638 5.61663 5.88709 6.19054 6.25310 6.50926 7.22458 8.03194 9.05775 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.028996 B = 0.002385 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.428797 B =11736.012579 C =12288.928882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.080 3.920 3 H 0.108 0.892 4 C 0.060 3.940 5 O -0.325 6.325 6 C 0.109 3.891 7 C -0.220 4.220 8 C -0.086 4.086 9 C -0.167 4.167 10 C -0.085 4.085 11 C -0.178 4.178 12 O -0.400 6.400 13 C 0.079 3.921 14 C -0.106 4.106 15 C 0.073 3.927 16 O -0.343 6.343 17 C -0.380 4.380 18 H 0.077 0.923 19 C -0.047 4.047 20 N -0.942 5.942 21 Si 1.012 2.988 22 H -0.254 1.254 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.124 0.876 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.037 0.963 40 H 0.035 0.965 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.950 3.122 -27.533 28.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 H 0.126 0.874 4 C -0.015 4.015 5 O -0.239 6.239 6 C 0.063 3.937 7 C -0.239 4.239 8 C -0.103 4.103 9 C -0.185 4.185 10 C -0.103 4.103 11 C -0.196 4.196 12 O -0.320 6.320 13 C 0.003 3.997 14 C -0.144 4.144 15 C -0.004 4.004 16 O -0.259 6.259 17 C -0.459 4.459 18 H 0.095 0.905 19 C -0.240 4.240 20 N -0.587 5.587 21 Si 0.833 3.167 22 H -0.178 1.178 23 H -0.201 1.201 24 H -0.200 1.200 25 H 0.105 0.895 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.087 0.913 30 H 0.159 0.841 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.142 0.858 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.976 2.590 -27.306 28.072 hybrid contribution 0.169 0.537 0.884 1.049 sum -5.807 3.127 -26.422 27.232 Atomic orbital electron populations 1.22186 0.94781 1.02600 1.03155 1.22457 0.95168 0.96340 0.83727 0.87412 1.23150 0.98492 0.81612 0.98237 1.86136 1.67250 1.27232 1.43239 1.19387 0.95123 0.91705 0.87454 1.21518 1.02665 1.02606 0.97110 1.21328 0.98187 0.93935 0.96890 1.21431 0.99516 0.96781 1.00782 1.21287 0.96439 0.99940 0.92619 1.20703 1.04727 0.92792 1.01426 1.88003 1.86727 1.36516 1.20744 1.22292 1.00354 0.92129 0.84974 1.21222 1.01475 0.98752 0.92939 1.22172 0.97135 0.93677 0.87409 1.85557 1.84890 1.36221 1.19272 1.21432 1.43324 0.92733 0.88397 0.90500 1.26370 0.98250 0.96868 1.02516 1.70228 1.48347 1.09029 1.31106 0.84612 0.77994 0.78062 0.76004 1.17753 1.20088 1.20026 0.89475 0.93074 0.92085 0.87872 0.91321 0.84102 0.83387 0.83532 0.83392 0.85795 0.91166 0.91772 0.92723 0.92469 0.94515 0.94707 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 9.33 71.98 0.67 -2.57 16 2 C 0.08 1.63 3.13 30.59 0.10 1.72 16 3 H 0.11 1.55 7.79 -2.39 -0.02 1.53 16 4 C 0.06 1.13 4.61 71.98 0.33 1.47 16 5 O -0.32 -8.28 9.22 -87.72 -0.81 -9.09 16 6 C 0.11 2.53 6.69 22.51 0.15 2.68 16 7 C -0.22 -4.07 9.04 22.37 0.20 -3.87 16 8 C -0.09 -1.31 10.04 22.25 0.22 -1.08 16 9 C -0.17 -2.49 10.04 22.28 0.22 -2.26 16 10 C -0.09 -1.45 10.04 22.25 0.22 -1.23 16 11 C -0.18 -3.93 9.99 22.37 0.22 -3.71 16 12 O -0.40 -11.84 9.95 -144.34 -1.44 -13.27 16 13 C 0.08 2.26 5.75 71.98 0.41 2.67 16 14 C -0.11 -4.17 5.95 30.59 0.18 -3.99 16 15 C 0.07 3.31 6.02 71.98 0.43 3.74 16 16 O -0.34 -20.97 9.78 -82.00 -0.80 -21.77 16 17 C -0.38 -23.17 9.89 67.91 0.67 -22.50 16 18 H 0.08 4.29 7.77 -2.91 -0.02 4.27 16 19 C -0.05 -2.87 5.49 84.82 0.47 -2.41 16 20 N -0.94 -62.03 13.68 21.61 0.30 -61.73 16 21 Si 1.01 45.82 29.55 68.60 2.03 47.85 16 22 H -0.25 -10.52 7.11 99.48 0.71 -9.82 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.05 1.21 7.56 -2.39 -0.02 1.19 16 27 H 0.06 1.15 7.87 -2.39 -0.02 1.13 16 28 H 0.10 1.28 7.65 -2.38 -0.02 1.26 16 29 H 0.07 1.29 7.68 -2.39 -0.02 1.27 16 30 H 0.14 2.02 6.30 -2.91 -0.02 2.00 16 31 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 32 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 36 H 0.06 1.64 7.87 -2.39 -0.02 1.62 16 37 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -79.50 349.33 4.78 -74.73 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.99 Total: 14.61 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 4.51 Total: -31.32 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 0.30 Total: -61.73 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -3.05 Total: -44.14 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -79.50 4.78 -74.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224380968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.319 kcal (2) G-P(sol) polarization free energy of solvation -79.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds