Wall clock time and date at job start Tue Mar 31 2020 01:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 O 1.42910 * 109.46729 * 54.99878 * 4 2 1 6 6 C 1.35903 * 116.99507 * 179.97438 * 5 4 2 7 7 C 1.38732 * 120.05874 * 359.72849 * 6 5 4 8 8 C 1.38145 * 119.93752 * 179.74094 * 7 6 5 9 9 C 1.38261 * 120.06199 * 0.51292 * 8 7 6 10 10 C 1.38269 * 120.10890 * 359.76323 * 9 8 7 11 11 C 1.38139 * 120.05690 * 359.97438 * 10 9 8 12 12 O 1.42895 * 109.47503 * 240.00043 * 2 1 3 13 13 C 1.42902 * 114.00204 * 89.99725 * 12 2 1 14 14 C 1.53001 * 109.46788 * 180.02562 * 13 12 2 15 15 C 1.53005 * 109.46671 * 180.02562 * 14 13 12 16 16 O 1.42900 * 109.47068 * 180.02562 * 15 14 13 17 17 C 1.34923 * 117.00186 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99875 * 359.97438 * 17 16 15 19 19 C 1.38640 * 120.00232 * 180.02562 * 17 16 15 20 20 N 1.31581 * 119.99734 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99702 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47052 * 90.00652 * 21 19 17 23 23 H 1.48499 * 109.46807 * 210.00216 * 21 19 17 24 24 H 1.48492 * 109.47261 * 329.99973 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 29 29 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 30 30 H 1.08000 * 120.02615 * 359.97438 * 7 6 5 31 31 H 1.08010 * 119.96698 * 180.27843 * 8 7 6 32 32 H 1.08000 * 119.94789 * 179.74671 * 9 8 7 33 33 H 1.07998 * 119.97135 * 179.97438 * 10 9 8 34 34 H 1.08004 * 120.03092 * 179.97438 * 11 10 9 35 35 H 1.08996 * 109.47054 * 300.00226 * 13 12 2 36 36 H 1.09000 * 109.46567 * 60.00876 * 13 12 2 37 37 H 1.08996 * 109.47390 * 299.99877 * 14 13 12 38 38 H 1.08997 * 109.47462 * 60.00846 * 14 13 12 39 39 H 1.08996 * 109.46984 * 299.99968 * 15 14 13 40 40 H 1.08993 * 109.47089 * 60.00085 * 15 14 13 41 41 H 0.97002 * 119.99311 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.4701 -2.0303 1.3095 6 6 1.8234 -2.8089 2.3659 7 6 2.7048 -2.3250 3.3217 8 6 3.0581 -3.1166 4.3974 9 6 2.5423 -4.3939 4.5162 10 6 1.6682 -4.8806 3.5619 11 6 1.3075 -4.0911 2.4872 12 8 2.0064 -0.6736 -1.1667 13 6 2.2001 0.1830 -2.2941 14 6 2.7080 -0.6409 -3.4791 15 6 2.9161 0.2764 -4.6859 16 8 3.3899 -0.4931 -5.7929 17 6 3.6249 0.1702 -6.9441 18 1 3.4535 1.2352 -6.9984 19 6 4.0854 -0.5154 -8.0577 20 7 4.3150 0.1316 -9.1801 21 14 4.3811 -2.3575 -7.9640 22 1 3.1389 -3.0781 -8.3422 23 1 5.4739 -2.7314 -8.8972 24 1 4.7655 -2.7273 -6.5781 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 3.1263 -0.7995 1.2057 29 1 1.7516 -0.1583 2.1370 30 1 3.1115 -1.3290 3.2269 31 1 3.7407 -2.7387 5.1442 32 1 2.8230 -5.0127 5.3558 33 1 1.2670 -5.8788 3.6567 34 1 0.6250 -4.4718 1.7418 35 1 1.2538 0.6546 -2.5588 36 1 2.9321 0.9513 -2.0449 37 1 3.6542 -1.1129 -3.2146 38 1 1.9758 -1.4090 -3.7281 39 1 1.9701 0.7487 -4.9506 40 1 3.6484 1.0442 -4.4367 41 1 4.6376 -0.3481 -9.9591 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224380969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:42 Heat of formation + Delta-G solvation = -101.996120 kcal Electronic energy + Delta-G solvation = -20776.951748 eV Core-core repulsion = 17429.880382 eV Total energy + Delta-G solvation = -3347.071366 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.39546 -38.64289 -37.39335 -36.56296 -33.30456 -31.97036 -31.30632 -30.93046 -29.86645 -27.20255 -25.59903 -23.47187 -23.01340 -22.60261 -21.27247 -20.80420 -18.63120 -17.52301 -17.06850 -16.31021 -16.13426 -15.95964 -15.67129 -15.24112 -14.98549 -14.41762 -14.29361 -13.76635 -13.69059 -13.35225 -13.07420 -12.98343 -12.69834 -12.48936 -12.10403 -11.86980 -11.83052 -11.35318 -11.33274 -11.19181 -11.00561 -10.90024 -10.72205 -10.68101 -9.92477 -9.60013 -9.49773 -9.29056 -9.26865 -8.44536 -8.14788 -5.97748 -3.65555 1.05478 1.18727 2.93537 3.41489 3.46355 3.49751 3.52971 3.66272 4.39848 4.57192 4.59776 4.63192 4.68040 4.81598 4.85501 4.91913 5.08543 5.11899 5.20487 5.22136 5.31075 5.35801 5.36804 5.40092 5.55831 5.68046 5.70184 5.72286 5.94426 6.02309 6.08313 6.13415 6.19701 6.25127 6.32017 6.49643 6.66019 6.66978 7.14697 7.24296 7.93424 8.38294 9.42220 9.97665 11.14896 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023632 B = 0.002636 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.540662 B =10618.166019 C =11383.405870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.088 3.912 3 H 0.080 0.920 4 C 0.063 3.937 5 O -0.299 6.299 6 C 0.134 3.866 7 C -0.213 4.213 8 C -0.081 4.081 9 C -0.164 4.164 10 C -0.081 4.081 11 C -0.153 4.153 12 O -0.372 6.372 13 C 0.066 3.934 14 C -0.117 4.117 15 C 0.089 3.911 16 O -0.333 6.333 17 C -0.358 4.358 18 H 0.078 0.922 19 C 0.042 3.958 20 N -0.914 5.914 21 Si 0.908 3.092 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.264 1.264 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.345 -3.559 29.827 30.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.030 3.970 3 H 0.098 0.902 4 C -0.012 4.012 5 O -0.212 6.212 6 C 0.088 3.912 7 C -0.232 4.232 8 C -0.099 4.099 9 C -0.183 4.183 10 C -0.099 4.099 11 C -0.172 4.172 12 O -0.292 6.292 13 C -0.010 4.010 14 C -0.155 4.155 15 C 0.011 3.989 16 O -0.249 6.249 17 C -0.436 4.436 18 H 0.096 0.904 19 C -0.154 4.154 20 N -0.559 5.559 21 Si 0.735 3.265 22 H -0.207 1.207 23 H -0.217 1.217 24 H -0.189 1.189 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.355 -4.014 29.519 30.461 hybrid contribution 0.245 -0.036 0.023 0.248 sum -6.110 -4.050 29.542 30.437 Atomic orbital electron populations 1.22220 0.95127 1.03739 1.02039 1.22120 0.94801 0.95073 0.84967 0.90243 1.22987 0.98612 0.82069 0.97538 1.86175 1.66514 1.26074 1.42429 1.19106 0.93809 0.91287 0.86949 1.21280 1.02859 1.01781 0.97241 1.20946 0.98254 0.93942 0.96778 1.21052 1.00311 0.96449 1.00446 1.20983 0.96494 0.99231 0.93196 1.20499 1.03977 0.92211 1.00502 1.88026 1.86251 1.35213 1.19672 1.22470 0.99418 0.92898 0.86230 1.21378 1.02636 0.99176 0.92302 1.21833 0.97173 0.92879 0.86999 1.85199 1.85167 1.35459 1.19064 1.20368 1.43056 0.93579 0.86565 0.90394 1.24330 0.97608 0.99423 0.94087 1.69692 1.48530 1.36158 1.01561 0.86136 0.77531 0.84644 0.78144 1.20708 1.21743 1.18853 0.90783 0.92017 0.91899 0.91148 0.90816 0.85578 0.85932 0.86049 0.85437 0.85121 0.93123 0.93211 0.90810 0.90712 0.95172 0.95203 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.33 37.16 0.35 -1.31 16 2 C 0.09 0.90 3.13 -26.73 -0.08 0.82 16 3 H 0.08 0.64 7.79 -51.93 -0.40 0.24 16 4 C 0.06 0.60 4.61 37.16 0.17 0.77 16 5 O -0.30 -3.56 9.22 -24.28 -0.22 -3.78 16 6 C 0.13 1.48 6.69 -39.21 -0.26 1.21 16 7 C -0.21 -1.98 9.04 -39.43 -0.36 -2.34 16 8 C -0.08 -0.66 10.04 -39.61 -0.40 -1.06 16 9 C -0.16 -1.31 10.04 -39.56 -0.40 -1.71 16 10 C -0.08 -0.68 10.04 -39.61 -0.40 -1.08 16 11 C -0.15 -1.56 9.99 -39.43 -0.39 -1.95 16 12 O -0.37 -5.22 9.95 -40.08 -0.40 -5.62 16 13 C 0.07 0.91 5.75 37.16 0.21 1.13 16 14 C -0.12 -2.06 5.95 -26.73 -0.16 -2.22 16 15 C 0.09 1.87 6.02 37.16 0.22 2.09 16 16 O -0.33 -9.06 8.61 -16.49 -0.14 -9.21 16 17 C -0.36 -10.81 10.35 30.88 0.32 -10.49 16 18 H 0.08 2.43 8.00 -52.48 -0.42 2.01 16 19 C 0.04 1.30 5.49 -17.51 -0.10 1.20 16 20 N -0.91 -28.80 13.96 55.48 0.77 -28.03 16 21 Si 0.91 23.81 28.62 -169.99 -4.86 18.95 16 22 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.26 -6.93 7.11 56.52 0.40 -6.52 16 25 H 0.07 0.82 7.56 -51.93 -0.39 0.42 16 26 H 0.06 0.58 7.87 -51.93 -0.41 0.18 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.65 7.65 -51.93 -0.40 0.25 16 29 H 0.07 0.50 7.68 -51.93 -0.40 0.10 16 30 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 31 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 32 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.05 0.64 7.87 -51.93 -0.41 0.23 16 36 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.27 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 348.21 15.07 5.25 5.25 Total: -1.00 -34.49 348.21 -7.40 -41.89 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -6.52 Total: -4.52 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.27 Total: -14.93 kcal Atomic # 7 Polarization: -28.80 SS G_CDS: 0.77 Total: -28.03 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.76 Total: -18.60 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -4.86 Total: 18.95 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.49 -7.40 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224380969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.110 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds