Wall clock time and date at job start Tue Mar 31 2020 01:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42891 * 114.00324 * 2 1 4 4 C 1.53005 * 109.47352 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.46540 * 65.00198 * 4 3 2 6 6 C 1.42903 * 113.99194 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.46576 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47075 * 65.00209 * 7 6 5 9 9 C 1.42898 * 114.00025 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47259 * 330.00253 * 9 8 7 11 11 C 1.50699 * 109.46964 * 90.00040 * 9 8 7 12 12 H 1.07996 * 120.00370 * 239.99770 * 11 9 8 13 13 C 1.37882 * 119.99790 * 60.00152 * 11 9 8 14 14 N 1.31508 * 120.00257 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99910 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47081 * 59.99441 * 15 13 11 17 17 H 1.48496 * 109.47319 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46734 * 299.99914 * 15 13 11 19 19 C 1.50703 * 109.47171 * 210.00101 * 9 8 7 20 20 C 1.38236 * 119.99787 * 324.72807 * 19 9 8 21 21 C 1.38241 * 119.99636 * 179.81278 * 20 19 9 22 22 C 1.38234 * 120.00115 * 0.39672 * 21 20 19 23 23 C 1.38240 * 119.99714 * 359.85290 * 22 21 20 24 24 C 1.38228 * 120.00011 * 145.00451 * 19 9 8 25 25 H 1.08997 * 109.46852 * 300.00545 * 1 2 3 26 26 H 1.09002 * 109.46795 * 59.99806 * 1 2 3 27 27 H 1.08998 * 109.47451 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47428 * 59.99725 * 3 2 1 29 29 H 1.09003 * 109.47361 * 299.99578 * 3 2 1 30 30 H 1.08994 * 109.46814 * 305.00090 * 4 3 2 31 31 H 1.09000 * 109.46904 * 184.99691 * 4 3 2 32 32 H 1.09000 * 109.47612 * 60.00476 * 6 5 4 33 33 H 1.08996 * 109.47288 * 299.99690 * 6 5 4 34 34 H 1.09000 * 109.47373 * 305.00156 * 7 6 5 35 35 H 1.09007 * 109.46576 * 185.00035 * 7 6 5 36 36 H 0.97002 * 120.00075 * 180.02562 * 14 13 11 37 37 H 1.07996 * 120.00216 * 359.97438 * 20 19 9 38 38 H 1.08000 * 119.99857 * 180.22806 * 21 20 19 39 39 H 1.07998 * 120.00030 * 179.84064 * 22 21 20 40 40 H 1.08003 * 119.99655 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.00508 * 359.97379 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9658 0.5791 -1.2202 6 6 5.3822 0.4185 -1.3216 7 6 5.7265 -0.2362 -2.6609 8 8 5.3686 0.6447 -3.7277 9 6 5.6508 0.1262 -5.0291 10 1 6.5129 -0.5387 -4.9762 11 6 4.4557 -0.6401 -5.5345 12 1 4.5497 -1.6879 -5.7784 13 6 3.2420 -0.0033 -5.6855 14 7 3.1273 1.2725 -5.3881 15 14 1.7604 -0.9533 -6.3114 16 1 1.4641 -2.0752 -5.3845 17 1 0.5858 -0.0476 -6.3829 18 1 2.0534 -1.4926 -7.6636 19 6 5.9516 1.2650 -5.9691 20 6 5.2833 2.4675 -5.8342 21 6 5.5621 3.5134 -6.6941 22 6 6.5032 3.3541 -7.6940 23 6 7.1678 2.1498 -7.8321 24 6 6.8917 1.1052 -6.9698 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6887 1.8464 0.8900 29 1 1.6888 1.8463 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9785 2.1764 0.0902 32 1 5.7354 -0.2138 -0.5071 33 1 5.8638 1.3943 -1.2592 34 1 5.1749 -1.1709 -2.7610 35 1 6.7967 -0.4397 -2.7013 36 1 2.2734 1.7204 -5.4940 37 1 4.5453 2.5908 -5.0555 38 1 5.0426 4.4541 -6.5865 39 1 6.7191 4.1704 -8.3674 40 1 7.9028 2.0252 -8.6135 41 1 7.4110 0.1644 -7.0778 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224517343.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:32 Heat of formation + Delta-G solvation = -120.133200 kcal Electronic energy + Delta-G solvation = -22352.225265 eV Core-core repulsion = 19004.367417 eV Total energy + Delta-G solvation = -3347.857849 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.94932 -39.37645 -38.40052 -37.53332 -34.72855 -32.46516 -31.57914 -31.20139 -29.62268 -28.41746 -27.12659 -24.74143 -23.45154 -23.38565 -22.74890 -21.80242 -18.70946 -17.91740 -17.77230 -17.46055 -17.14743 -16.62389 -16.37167 -16.32023 -15.84609 -15.64552 -15.28488 -14.91103 -14.83370 -14.16174 -13.97492 -13.72841 -13.42830 -13.21807 -13.10918 -12.94657 -12.80097 -12.55026 -12.39553 -12.22268 -11.97525 -11.83608 -11.70818 -11.38412 -11.00474 -10.65799 -10.64437 -10.43333 -9.83604 -9.38141 -9.12766 -7.85435 -6.26674 0.85148 1.02733 1.37497 1.40239 1.45183 2.41976 2.85341 2.88385 3.11961 3.35873 3.49989 4.07863 4.23177 4.29288 4.35733 4.38673 4.40293 4.44520 4.46209 4.50946 4.53895 4.60126 4.64714 4.71103 4.75043 4.80521 4.83737 4.92515 5.05229 5.21454 5.25907 5.50450 5.66012 5.71734 5.91253 6.09870 6.20668 6.21406 6.39762 6.48187 6.57137 6.69220 7.16197 7.51297 8.93817 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.015385 B = 0.005626 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.469740 B = 4975.273608 C = 5803.327911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.062 3.938 4 C 0.056 3.944 5 O -0.401 6.401 6 C 0.075 3.925 7 C 0.063 3.937 8 O -0.381 6.381 9 C 0.243 3.757 10 H 0.015 0.985 11 C -0.569 4.569 12 H 0.047 0.953 13 C 0.049 3.951 14 N -0.852 5.852 15 Si 0.939 3.061 16 H -0.279 1.279 17 H -0.281 1.281 18 H -0.273 1.273 19 C -0.067 4.067 20 C -0.065 4.065 21 C -0.162 4.162 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.144 4.144 25 H 0.065 0.935 26 H 0.033 0.967 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.063 0.937 36 H 0.256 0.744 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.571 3.155 8.404 9.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.015 4.015 4 C -0.020 4.020 5 O -0.321 6.321 6 C -0.001 4.001 7 C -0.015 4.015 8 O -0.300 6.300 9 C 0.187 3.813 10 H 0.033 0.967 11 C -0.606 4.606 12 H 0.065 0.935 13 C -0.156 4.156 14 N -0.487 5.487 15 Si 0.765 3.235 16 H -0.204 1.204 17 H -0.206 1.206 18 H -0.199 1.199 19 C -0.067 4.067 20 C -0.084 4.084 21 C -0.180 4.180 22 C -0.159 4.159 23 C -0.163 4.163 24 C -0.162 4.162 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.153 0.847 38 H 0.137 0.863 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.329 3.262 8.302 9.018 hybrid contribution -1.034 -0.706 -0.346 1.299 sum 0.295 2.556 7.956 8.361 Atomic orbital electron populations 1.22890 0.79878 1.03559 1.00639 1.87909 1.21263 1.28790 1.95538 1.22691 0.92601 0.84852 1.01309 1.22704 0.93647 0.98403 0.87264 1.88155 1.22752 1.82203 1.38948 1.22551 0.81588 1.00187 0.95818 1.22372 0.97556 0.93708 0.87816 1.88016 1.85242 1.42474 1.14305 1.18502 0.92831 0.89192 0.80763 0.96678 1.21573 0.96066 0.95870 1.47129 0.93525 1.25516 1.00536 0.95432 0.94105 1.70007 1.23916 1.09425 1.45343 0.85947 0.79927 0.78967 0.78686 1.20431 1.20572 1.19875 1.20109 0.94423 0.94958 0.97243 1.21665 0.95230 0.91758 0.99765 1.21390 0.99898 0.99033 0.97696 1.21235 0.97657 0.98139 0.98858 1.21134 1.01691 0.93440 1.00031 1.21048 0.99066 0.99304 0.96764 0.91659 0.94786 0.89000 0.88532 0.94283 0.91525 0.90281 0.90022 0.92519 0.95729 0.91878 0.93390 0.84691 0.86323 0.84422 0.84261 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.42 -13.78 10.67 -144.34 -1.54 -15.32 16 3 C 0.06 1.77 6.32 71.98 0.45 2.23 16 4 C 0.06 1.66 6.32 71.98 0.45 2.11 16 5 O -0.40 -16.50 10.27 -135.05 -1.39 -17.89 16 6 C 0.07 2.64 6.32 71.98 0.45 3.09 16 7 C 0.06 2.67 6.12 71.98 0.44 3.11 16 8 O -0.38 -19.77 8.50 -144.34 -1.23 -20.99 16 9 C 0.24 12.80 2.59 29.10 0.08 12.87 16 10 H 0.02 0.76 7.70 -2.39 -0.02 0.74 16 11 C -0.57 -32.59 8.89 25.60 0.23 -32.37 16 12 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 13 C 0.05 2.76 5.24 84.66 0.44 3.21 16 14 N -0.85 -48.78 8.50 21.45 0.18 -48.60 16 15 Si 0.94 45.47 29.54 68.60 2.03 47.50 16 16 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 18 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 19 C -0.07 -3.34 4.80 -19.87 -0.10 -3.44 16 20 C -0.07 -3.25 7.46 22.27 0.17 -3.08 16 21 C -0.16 -6.81 10.05 22.27 0.22 -6.58 16 22 C -0.14 -5.16 10.05 22.27 0.22 -4.93 16 23 C -0.15 -5.37 10.05 22.27 0.22 -5.14 16 24 C -0.14 -6.22 9.68 22.27 0.22 -6.01 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 2.30 8.09 -2.38 -0.02 2.28 16 36 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 37 H 0.14 7.53 5.50 -2.91 -0.02 7.51 16 38 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 39 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 40 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 41 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -70.09 344.75 3.80 -66.30 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.99 Total: 22.03 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 4.76 Total: -33.03 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.18 Total: -48.60 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -4.15 Total: -54.20 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -70.09 3.80 -66.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224517343.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.838 kcal (2) G-P(sol) polarization free energy of solvation -70.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds