Wall clock time and date at job start Tue Mar 31 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00304 * 2 1 4 4 C 1.53003 * 109.47270 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47204 * 65.00428 * 4 3 2 6 6 C 1.42895 * 114.00092 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47158 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47605 * 64.99671 * 7 6 5 9 9 C 1.42899 * 114.00250 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47208 * 29.99786 * 9 8 7 11 11 C 1.50696 * 109.47110 * 269.99490 * 9 8 7 12 12 H 1.07998 * 120.00257 * 325.08841 * 11 9 8 13 13 C 1.37878 * 119.99642 * 145.08507 * 11 9 8 14 14 N 1.31513 * 120.00266 * 6.08350 * 13 11 9 15 15 Si 1.86800 * 119.99701 * 186.07470 * 13 11 9 16 16 H 1.48507 * 109.47416 * 270.00152 * 15 13 11 17 17 H 1.48490 * 109.47332 * 30.00458 * 15 13 11 18 18 H 1.48508 * 109.47112 * 150.00705 * 15 13 11 19 19 C 1.50705 * 109.47003 * 149.99796 * 9 8 7 20 20 C 1.38234 * 119.99785 * 36.28659 * 19 9 8 21 21 C 1.38243 * 119.99646 * 179.78679 * 20 19 9 22 22 C 1.38230 * 119.99992 * 0.44502 * 21 20 19 23 23 C 1.38238 * 120.00306 * 359.80752 * 22 21 20 24 24 C 1.38230 * 120.00168 * 216.55950 * 19 9 8 25 25 H 1.09001 * 109.47213 * 59.99616 * 1 2 3 26 26 H 1.08997 * 109.47211 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46757 * 299.99984 * 1 2 3 28 28 H 1.08998 * 109.47382 * 60.00321 * 3 2 1 29 29 H 1.09002 * 109.47415 * 300.00265 * 3 2 1 30 30 H 1.08993 * 109.47204 * 305.00170 * 4 3 2 31 31 H 1.08999 * 109.47012 * 185.00029 * 4 3 2 32 32 H 1.08997 * 109.47785 * 59.98968 * 6 5 4 33 33 H 1.09005 * 109.46627 * 299.99105 * 6 5 4 34 34 H 1.09003 * 109.47466 * 304.99545 * 7 6 5 35 35 H 1.09000 * 109.47367 * 184.99597 * 7 6 5 36 36 H 0.96995 * 119.99957 * 355.50295 * 14 13 11 37 37 H 1.08000 * 120.00588 * 359.97438 * 20 19 9 38 38 H 1.08000 * 120.00042 * 180.27232 * 21 20 19 39 39 H 1.07993 * 120.00180 * 179.83713 * 22 21 20 40 40 H 1.07995 * 120.00151 * 180.02562 * 23 22 21 41 41 H 1.08006 * 119.99653 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9650 0.5796 -1.2220 6 6 5.3811 0.4190 -1.3247 7 6 5.7245 -0.2351 -2.6644 8 8 5.3657 0.6461 -3.7307 9 6 5.6458 0.1276 -5.0325 10 1 5.5712 -0.9597 -5.0143 11 6 7.0390 0.5287 -5.4438 12 1 7.4355 1.4876 -5.1442 13 6 7.8074 -0.3285 -6.2026 14 7 7.2853 -1.4421 -6.6682 15 14 9.5900 0.0922 -6.5696 16 1 9.6647 0.8758 -7.8289 17 1 10.1490 0.8956 -5.4529 18 1 10.3736 -1.1604 -6.7190 19 6 4.6512 0.6830 -6.0191 20 6 4.2001 1.9831 -5.8882 21 6 3.2911 2.4940 -6.7958 22 6 2.8263 1.7018 -7.8289 23 6 3.2735 0.4000 -7.9568 24 6 4.1858 -0.1094 -7.0517 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6888 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8515 0.5681 0.8408 31 1 3.9786 2.1764 0.0889 32 1 5.7351 -0.2134 -0.5106 33 1 5.8628 1.3949 -1.2624 34 1 5.1728 -1.1699 -2.7644 35 1 6.7945 -0.4385 -2.7058 36 1 6.3806 -1.6927 -6.4242 37 1 4.5600 2.6007 -5.0786 38 1 2.9420 3.5111 -6.6961 39 1 2.1142 2.1001 -8.5364 40 1 2.9107 -0.2187 -8.7642 41 1 4.5353 -1.1264 -7.1517 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224517344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:35 Heat of formation + Delta-G solvation = -118.467333 kcal Electronic energy + Delta-G solvation = -21870.873775 eV Core-core repulsion = 18523.088163 eV Total energy + Delta-G solvation = -3347.785611 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.59841 -38.33651 -37.28809 -36.23666 -33.22218 -31.10137 -30.29531 -30.02106 -28.40662 -26.30384 -25.98174 -23.13654 -22.52209 -22.10343 -21.41205 -20.33720 -17.24625 -16.98078 -16.72271 -16.17319 -15.73798 -15.44981 -15.30516 -14.75467 -14.54408 -14.00075 -13.78742 -13.68899 -13.46657 -12.95004 -12.59510 -12.53195 -12.19084 -12.13302 -11.75612 -11.70369 -11.34983 -11.11003 -10.88354 -10.75926 -10.41377 -10.24207 -10.19973 -9.76154 -9.65471 -9.53269 -9.36616 -8.56754 -8.33159 -8.07659 -7.58445 -6.49461 -4.24285 2.25096 2.28550 3.38690 3.41185 3.57238 3.70318 3.86897 4.40795 4.58726 4.82548 4.95655 5.12664 5.20635 5.23686 5.26020 5.31503 5.45510 5.54252 5.58075 5.63556 5.64173 5.71019 5.73425 5.80792 5.95091 6.22451 6.29466 6.33802 6.41834 6.47449 6.75998 6.92203 6.93618 7.06539 7.27442 7.39228 7.45734 7.61947 7.85514 7.95556 8.12644 8.59397 8.69684 9.48699 10.84993 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.005005 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.422073 B = 5593.072850 C = 6999.708172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.064 3.936 4 C 0.062 3.938 5 O -0.369 6.369 6 C 0.067 3.933 7 C 0.077 3.923 8 O -0.387 6.387 9 C 0.227 3.773 10 H 0.033 0.967 11 C -0.603 4.603 12 H 0.060 0.940 13 C 0.026 3.974 14 N -0.900 5.900 15 Si 1.072 2.928 16 H -0.286 1.286 17 H -0.286 1.286 18 H -0.283 1.283 19 C -0.031 4.031 20 C -0.104 4.104 21 C -0.131 4.131 22 C -0.151 4.151 23 C -0.125 4.125 24 C -0.119 4.119 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.270 0.730 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.265 4.517 10.314 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.013 4.013 4 C -0.015 4.015 5 O -0.288 6.288 6 C -0.009 4.009 7 C 0.000 4.000 8 O -0.306 6.306 9 C 0.171 3.829 10 H 0.051 0.949 11 C -0.640 4.640 12 H 0.078 0.922 13 C -0.179 4.179 14 N -0.536 5.536 15 Si 0.899 3.101 16 H -0.212 1.212 17 H -0.212 1.212 18 H -0.208 1.208 19 C -0.032 4.032 20 C -0.122 4.122 21 C -0.149 4.149 22 C -0.169 4.169 23 C -0.143 4.143 24 C -0.137 4.137 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.022 3.946 9.371 12.952 hybrid contribution -1.223 0.678 0.859 1.641 sum -9.245 4.624 10.230 14.543 Atomic orbital electron populations 1.22728 0.81359 1.02716 0.99722 1.87971 1.19363 1.27471 1.95332 1.22563 0.92739 0.85362 1.00635 1.22450 0.93150 0.97521 0.88387 1.88082 1.22230 1.81651 1.36792 1.22609 0.81493 0.99971 0.96844 1.22172 0.99015 0.92752 0.86059 1.87755 1.84631 1.43585 1.14676 1.18845 0.92036 0.93431 0.78619 0.94898 1.22303 0.97893 1.05772 1.38058 0.92177 1.25926 1.05392 0.93664 0.92962 1.70827 1.18294 1.24476 1.40053 0.83505 0.74306 0.75872 0.76384 1.21245 1.21232 1.20807 1.20388 0.92402 0.93976 0.96413 1.20870 0.97039 0.95659 0.98603 1.20993 0.99011 0.98935 0.95961 1.20833 1.02020 0.94790 0.99247 1.20932 0.98650 0.95690 0.99060 1.20954 0.97159 1.00068 0.95548 0.93971 0.89708 0.94437 0.92225 0.92232 0.92956 0.92046 0.92757 0.92814 0.94077 0.91834 0.91773 0.86525 0.87392 0.87480 0.87225 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.38 10.67 -40.07 -0.43 -5.80 16 3 C 0.06 0.77 6.32 37.16 0.23 1.00 16 4 C 0.06 0.81 6.32 37.16 0.23 1.04 16 5 O -0.37 -6.54 10.27 -49.79 -0.51 -7.05 16 6 C 0.07 1.12 6.32 37.15 0.23 1.35 16 7 C 0.08 1.58 6.12 37.15 0.23 1.81 16 8 O -0.39 -9.32 9.13 -40.09 -0.37 -9.69 16 9 C 0.23 5.86 2.19 -29.03 -0.06 5.79 16 10 H 0.03 0.90 5.99 -51.93 -0.31 0.59 16 11 C -0.60 -16.73 8.62 -34.44 -0.30 -17.02 16 12 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 13 C 0.03 0.72 5.45 -17.82 -0.10 0.63 16 14 N -0.90 -26.00 13.63 55.43 0.76 -25.24 16 15 Si 1.07 24.71 29.91 -169.99 -5.08 19.63 16 16 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 C -0.03 -0.76 4.98 -104.62 -0.52 -1.28 16 20 C -0.10 -2.32 9.35 -39.58 -0.37 -2.69 16 21 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 22 C -0.15 -2.78 10.05 -39.58 -0.40 -3.18 16 23 C -0.13 -2.48 10.05 -39.58 -0.40 -2.87 16 24 C -0.12 -2.73 9.54 -39.58 -0.38 -3.11 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.27 7.70 5.21 -40.82 -0.21 7.49 16 37 H 0.12 2.61 7.67 -52.49 -0.40 2.20 16 38 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.12 2.71 6.86 -52.48 -0.36 2.35 16 LS Contribution 348.50 15.07 5.25 5.25 Total: -1.00 -32.25 348.50 -7.66 -39.91 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.41 Total: 3.01 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -0.87 Total: -20.02 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.76 Total: -25.24 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -1.30 Total: -22.54 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -5.08 Total: 19.63 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.25 -7.66 -39.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224517344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.556 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds