Wall clock time and date at job start Tue Mar 31 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00304 * 2 1 4 4 C 1.53003 * 109.47270 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47204 * 65.00428 * 4 3 2 6 6 C 1.42895 * 114.00092 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47158 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47605 * 64.99671 * 7 6 5 9 9 C 1.42899 * 114.00250 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47208 * 29.99786 * 9 8 7 11 11 C 1.50696 * 109.47110 * 269.99490 * 9 8 7 12 12 H 1.07998 * 120.00257 * 325.08841 * 11 9 8 13 13 C 1.37878 * 119.99642 * 145.08507 * 11 9 8 14 14 N 1.31513 * 120.00266 * 6.08350 * 13 11 9 15 15 Si 1.86800 * 119.99701 * 186.07470 * 13 11 9 16 16 H 1.48507 * 109.47416 * 270.00152 * 15 13 11 17 17 H 1.48490 * 109.47332 * 30.00458 * 15 13 11 18 18 H 1.48508 * 109.47112 * 150.00705 * 15 13 11 19 19 C 1.50705 * 109.47003 * 149.99796 * 9 8 7 20 20 C 1.38234 * 119.99785 * 36.28659 * 19 9 8 21 21 C 1.38243 * 119.99646 * 179.78679 * 20 19 9 22 22 C 1.38230 * 119.99992 * 0.44502 * 21 20 19 23 23 C 1.38238 * 120.00306 * 359.80752 * 22 21 20 24 24 C 1.38230 * 120.00168 * 216.55950 * 19 9 8 25 25 H 1.09001 * 109.47213 * 59.99616 * 1 2 3 26 26 H 1.08997 * 109.47211 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46757 * 299.99984 * 1 2 3 28 28 H 1.08998 * 109.47382 * 60.00321 * 3 2 1 29 29 H 1.09002 * 109.47415 * 300.00265 * 3 2 1 30 30 H 1.08993 * 109.47204 * 305.00170 * 4 3 2 31 31 H 1.08999 * 109.47012 * 185.00029 * 4 3 2 32 32 H 1.08997 * 109.47785 * 59.98968 * 6 5 4 33 33 H 1.09005 * 109.46627 * 299.99105 * 6 5 4 34 34 H 1.09003 * 109.47466 * 304.99545 * 7 6 5 35 35 H 1.09000 * 109.47367 * 184.99597 * 7 6 5 36 36 H 0.96995 * 119.99957 * 355.50295 * 14 13 11 37 37 H 1.08000 * 120.00588 * 359.97438 * 20 19 9 38 38 H 1.08000 * 120.00042 * 180.27232 * 21 20 19 39 39 H 1.07993 * 120.00180 * 179.83713 * 22 21 20 40 40 H 1.07995 * 120.00151 * 180.02562 * 23 22 21 41 41 H 1.08006 * 119.99653 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9650 0.5796 -1.2220 6 6 5.3811 0.4190 -1.3247 7 6 5.7245 -0.2351 -2.6644 8 8 5.3657 0.6461 -3.7307 9 6 5.6458 0.1276 -5.0325 10 1 5.5712 -0.9597 -5.0143 11 6 7.0390 0.5287 -5.4438 12 1 7.4355 1.4876 -5.1442 13 6 7.8074 -0.3285 -6.2026 14 7 7.2853 -1.4421 -6.6682 15 14 9.5900 0.0922 -6.5696 16 1 9.6647 0.8758 -7.8289 17 1 10.1490 0.8956 -5.4529 18 1 10.3736 -1.1604 -6.7190 19 6 4.6512 0.6830 -6.0191 20 6 4.2001 1.9831 -5.8882 21 6 3.2911 2.4940 -6.7958 22 6 2.8263 1.7018 -7.8289 23 6 3.2735 0.4000 -7.9568 24 6 4.1858 -0.1094 -7.0517 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6888 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8515 0.5681 0.8408 31 1 3.9786 2.1764 0.0889 32 1 5.7351 -0.2134 -0.5106 33 1 5.8628 1.3949 -1.2624 34 1 5.1728 -1.1699 -2.7644 35 1 6.7945 -0.4385 -2.7058 36 1 6.3806 -1.6927 -6.4242 37 1 4.5600 2.6007 -5.0786 38 1 2.9420 3.5111 -6.6961 39 1 2.1142 2.1001 -8.5364 40 1 2.9107 -0.2187 -8.7642 41 1 4.5353 -1.1264 -7.1517 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224517344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:35 Heat of formation + Delta-G solvation = -138.600846 kcal Electronic energy + Delta-G solvation = -21871.746829 eV Core-core repulsion = 18523.088163 eV Total energy + Delta-G solvation = -3348.658666 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.28010 -39.50043 -38.59746 -37.78769 -35.22274 -32.66535 -31.70967 -31.58331 -29.78654 -27.98673 -27.13243 -25.07929 -23.68357 -23.50368 -23.01613 -22.09099 -19.25974 -18.18986 -17.83945 -17.70594 -17.34421 -16.56176 -16.49269 -16.13935 -16.04443 -15.75789 -15.54101 -15.13033 -15.07411 -14.50848 -14.13000 -13.97999 -13.86565 -13.43604 -13.22367 -12.98014 -12.74153 -12.58759 -12.29986 -12.04213 -12.01573 -11.97317 -11.86542 -11.50949 -11.46657 -10.67389 -10.66204 -10.56916 -10.19937 -9.71893 -9.39904 -8.67596 -6.45226 0.59794 0.64060 1.50297 1.58442 1.77102 2.49732 2.69510 2.85775 2.88500 3.11354 3.16069 3.99521 4.10106 4.16141 4.18793 4.20271 4.22029 4.29054 4.38241 4.40391 4.44322 4.47951 4.52895 4.57096 4.67278 4.70980 4.76164 4.79194 4.82968 4.84220 4.94972 5.22761 5.28304 5.65951 5.70687 5.80873 5.93200 5.96582 6.17083 6.24943 6.32081 6.47341 6.64353 7.36590 8.65269 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.005005 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.422073 B = 5593.072850 C = 6999.708172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.061 3.939 4 C 0.054 3.946 5 O -0.404 6.404 6 C 0.077 3.923 7 C 0.069 3.931 8 O -0.397 6.397 9 C 0.232 3.768 10 H 0.004 0.996 11 C -0.615 4.615 12 H 0.047 0.953 13 C -0.018 4.018 14 N -0.921 5.921 15 Si 1.116 2.884 16 H -0.276 1.276 17 H -0.270 1.270 18 H -0.277 1.277 19 C -0.066 4.066 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.137 4.137 23 C -0.124 4.124 24 C -0.144 4.144 25 H 0.041 0.959 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.029 0.971 35 H 0.056 0.944 36 H 0.260 0.740 37 H 0.107 0.893 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.141 0.859 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.362 6.410 10.339 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.015 4.015 4 C -0.022 4.022 5 O -0.324 6.324 6 C 0.001 3.999 7 C -0.008 4.008 8 O -0.317 6.317 9 C 0.175 3.825 10 H 0.022 0.978 11 C -0.652 4.652 12 H 0.065 0.935 13 C -0.218 4.218 14 N -0.559 5.559 15 Si 0.937 3.063 16 H -0.202 1.202 17 H -0.195 1.195 18 H -0.203 1.203 19 C -0.067 4.067 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.155 4.155 23 C -0.141 4.141 24 C -0.162 4.162 25 H 0.059 0.941 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.125 0.875 38 H 0.165 0.835 39 H 0.173 0.827 40 H 0.159 0.841 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.147 5.848 9.419 14.374 hybrid contribution -1.041 0.111 0.898 1.379 sum -10.188 5.959 10.317 15.677 Atomic orbital electron populations 1.22908 0.79637 1.03634 1.00852 1.87917 1.21452 1.28767 1.95589 1.22706 0.92045 0.84951 1.01811 1.22773 0.94031 0.98554 0.86883 1.88025 1.22365 1.82516 1.39522 1.22506 0.81740 1.00638 0.94996 1.22389 0.98481 0.92622 0.87273 1.87723 1.84738 1.44457 1.14781 1.18664 0.92238 0.91756 0.79815 0.97825 1.22462 0.99352 1.05187 1.38216 0.93493 1.27275 1.08861 0.93091 0.92528 1.70914 1.18048 1.25510 1.41382 0.82958 0.70050 0.76172 0.77113 1.20178 1.19498 1.20272 1.20391 0.93953 0.95427 0.96895 1.20928 0.98552 0.94855 0.99731 1.21416 0.97141 1.00742 0.94753 1.21366 1.01374 0.93676 0.99072 1.21316 0.97162 0.96958 0.98704 1.20984 0.99019 0.99456 0.96752 0.94072 0.89040 0.91994 0.88574 0.93358 0.91621 0.89928 0.89555 0.91993 0.95254 0.92557 0.92867 0.87485 0.83499 0.82717 0.84127 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.73 16 2 O -0.42 -11.43 10.67 -144.35 -1.54 -12.97 16 3 C 0.06 1.39 6.32 71.98 0.45 1.84 16 4 C 0.05 1.33 6.32 71.98 0.45 1.78 16 5 O -0.40 -14.37 10.27 -135.06 -1.39 -15.76 16 6 C 0.08 2.57 6.32 71.98 0.45 3.03 16 7 C 0.07 2.98 6.12 71.98 0.44 3.42 16 8 O -0.40 -20.15 9.13 -144.34 -1.32 -21.47 16 9 C 0.23 12.69 2.19 29.10 0.06 12.75 16 10 H 0.00 0.23 5.99 -2.39 -0.01 0.22 16 11 C -0.61 -35.58 8.62 25.60 0.22 -35.36 16 12 H 0.05 2.77 7.82 -2.91 -0.02 2.74 16 13 C -0.02 -1.00 5.45 84.66 0.46 -0.54 16 14 N -0.92 -55.38 13.63 21.45 0.29 -55.09 16 15 Si 1.12 50.32 29.91 68.60 2.05 52.37 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 19 C -0.07 -3.35 4.98 -19.87 -0.10 -3.45 16 20 C -0.12 -5.52 9.35 22.27 0.21 -5.31 16 21 C -0.12 -4.40 10.05 22.27 0.22 -4.18 16 22 C -0.14 -4.54 10.05 22.27 0.22 -4.32 16 23 C -0.12 -4.67 10.05 22.27 0.22 -4.44 16 24 C -0.14 -6.78 9.54 22.27 0.21 -6.57 16 25 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 1.93 8.14 -2.38 -0.02 1.92 16 34 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.26 15.79 5.21 -92.71 -0.48 15.31 16 37 H 0.11 4.90 7.67 -2.91 -0.02 4.88 16 38 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 39 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 40 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 41 H 0.10 4.79 6.86 -2.91 -0.02 4.77 16 Total: -1.00 -73.40 348.50 4.17 -69.24 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 1.27 Total: 23.29 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 4.79 Total: -39.61 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.29 Total: -55.09 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -4.25 Total: -50.20 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.05 Total: 52.37 kcal Total: -73.40 4.17 -69.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224517344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.363 kcal (2) G-P(sol) polarization free energy of solvation -73.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds