Wall clock time and date at job start Tue Mar 31 2020 01:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00044 * 2 1 4 4 C 1.53001 * 109.47057 * 185.00271 * 3 2 1 5 5 C 1.52991 * 109.47334 * 65.00207 * 3 2 1 6 6 O 1.42904 * 109.47226 * 64.99582 * 5 3 2 7 7 C 1.42899 * 113.99621 * 179.97438 * 6 5 3 8 8 H 1.08997 * 109.47399 * 30.00943 * 7 6 5 9 9 C 1.50703 * 109.47403 * 270.00422 * 7 6 5 10 10 H 1.08003 * 119.99825 * 325.09239 * 9 7 6 11 11 C 1.37871 * 119.99991 * 145.09529 * 9 7 6 12 12 N 1.31516 * 120.00307 * 6.05154 * 11 9 7 13 13 Si 1.86806 * 119.99860 * 186.05452 * 11 9 7 14 14 H 1.48504 * 109.46805 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.46830 * 299.99670 * 13 11 9 16 16 H 1.48497 * 109.47221 * 60.00020 * 13 11 9 17 17 C 1.50705 * 109.46677 * 150.00485 * 7 6 5 18 18 C 1.38235 * 119.99820 * 36.27779 * 17 7 6 19 19 C 1.38241 * 119.99878 * 179.78853 * 18 17 7 20 20 C 1.38237 * 119.99736 * 0.44060 * 19 18 17 21 21 C 1.38232 * 119.99927 * 359.80611 * 20 19 18 22 22 C 1.38227 * 120.00145 * 359.97438 * 21 20 19 23 23 O 1.42904 * 109.46859 * 304.99856 * 3 2 1 24 24 C 1.42901 * 113.99925 * 305.00333 * 23 3 2 25 25 H 1.08998 * 109.47537 * 60.00088 * 1 2 3 26 26 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47058 * 300.00040 * 1 2 3 28 28 H 1.09004 * 109.47033 * 300.00283 * 4 3 2 29 29 H 1.09002 * 109.47089 * 59.99565 * 4 3 2 30 30 H 1.08990 * 109.47248 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47037 * 305.00493 * 5 3 2 32 32 H 1.08997 * 109.47195 * 185.00356 * 5 3 2 33 33 H 0.96998 * 119.99398 * 355.51692 * 12 11 9 34 34 H 1.08005 * 120.00321 * 359.97438 * 18 17 7 35 35 H 1.08003 * 120.00070 * 180.27097 * 19 18 17 36 36 H 1.08000 * 119.99815 * 179.83636 * 20 19 18 37 37 H 1.08004 * 119.99682 * 180.02562 * 21 20 19 38 38 H 1.08007 * 119.99974 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.47188 * 60.00290 * 24 23 3 40 40 H 1.09007 * 109.46505 * 180.02562 * 24 23 3 41 41 H 1.08993 * 109.47208 * 299.99603 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5304 1.1869 -0.1258 5 6 1.6608 2.0193 1.3073 6 8 2.2713 1.3336 2.4024 7 6 2.0067 1.9227 3.6771 8 1 1.0314 2.4089 3.6573 9 6 3.0705 2.9433 3.9896 10 1 4.0884 2.7780 3.6684 11 6 2.7445 4.0880 4.6855 12 7 1.5347 4.2351 5.1797 13 14 4.0213 5.4302 4.9262 14 1 3.4246 6.5476 5.7012 15 1 5.1848 4.8795 5.6665 16 1 4.4690 5.9308 3.6018 17 6 2.0121 0.8509 4.7366 18 6 2.8998 -0.2050 4.6469 19 6 2.9078 -1.1858 5.6210 20 6 2.0219 -1.1156 6.6799 21 6 1.1308 -0.0624 6.7667 22 6 1.1259 0.9208 5.7951 23 8 1.4980 2.0549 -1.1037 24 6 1.6719 1.4167 -2.3704 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9212 0.6151 0.7160 29 1 3.7794 0.6783 -1.0572 30 1 3.9737 2.1826 -0.1263 31 1 0.5789 2.0252 1.4401 32 1 2.0280 3.0450 1.2706 33 1 0.8530 3.5688 4.9997 34 1 3.5892 -0.2620 3.8175 35 1 3.6044 -2.0085 5.5534 36 1 2.0263 -1.8832 7.4395 37 1 0.4389 -0.0073 7.5942 38 1 0.4293 1.7434 5.8628 39 1 1.1567 0.4562 -2.3670 40 1 1.2576 2.0490 -3.1557 41 1 2.7345 1.2584 -2.5546 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224679009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:50 Heat of formation + Delta-G solvation = -116.146794 kcal Electronic energy + Delta-G solvation = -22934.316170 eV Core-core repulsion = 19586.631185 eV Total energy + Delta-G solvation = -3347.684985 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.54659 -38.53842 -36.56016 -35.65353 -33.29236 -31.24230 -30.24495 -30.07199 -27.49000 -26.55027 -26.15997 -25.05132 -23.11547 -21.72436 -20.52666 -20.40885 -17.64987 -17.24965 -16.45400 -15.82156 -15.77285 -15.22367 -14.94133 -14.45783 -14.19896 -13.84227 -13.64226 -13.51764 -13.42475 -13.02279 -12.59493 -12.31246 -12.24668 -11.97203 -11.91995 -11.77470 -11.59165 -11.50199 -10.88820 -10.69550 -10.40998 -10.32527 -10.21584 -9.87796 -9.85347 -9.61857 -9.41420 -8.61547 -8.43348 -8.13560 -7.65713 -6.54275 -4.29336 2.19045 2.21890 3.37039 3.37741 3.45687 3.57042 3.96303 4.38874 4.62080 4.95130 5.12209 5.19492 5.29263 5.38726 5.42573 5.51699 5.57772 5.59289 5.66557 5.68805 5.78278 5.80523 5.93483 5.99797 6.13071 6.18240 6.26053 6.34738 6.39550 6.46953 6.66412 6.74383 6.84740 6.87056 7.22156 7.32214 7.51355 7.63266 7.78570 7.88481 8.02638 8.48971 8.63947 9.42866 10.80193 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.006897 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.329397 B = 4058.803207 C = 5542.055848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.272 3.728 4 C -0.153 4.153 5 C 0.070 3.930 6 O -0.379 6.379 7 C 0.229 3.771 8 H 0.033 0.967 9 C -0.602 4.602 10 H 0.061 0.939 11 C 0.027 3.973 12 N -0.898 5.898 13 Si 1.069 2.931 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.033 4.033 18 C -0.104 4.104 19 C -0.130 4.130 20 C -0.150 4.150 21 C -0.125 4.125 22 C -0.119 4.119 23 O -0.397 6.397 24 C 0.032 3.968 25 H 0.043 0.957 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.269 0.731 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.046 0.954 40 H 0.083 0.917 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 -7.163 -8.294 10.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.307 6.307 3 C 0.195 3.805 4 C -0.210 4.210 5 C -0.008 4.008 6 O -0.299 6.299 7 C 0.173 3.827 8 H 0.051 0.949 9 C -0.640 4.640 10 H 0.080 0.920 11 C -0.179 4.179 12 N -0.534 5.534 13 Si 0.896 3.104 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.034 4.034 18 C -0.122 4.122 19 C -0.148 4.148 20 C -0.168 4.168 21 C -0.143 4.143 22 C -0.137 4.137 23 O -0.318 6.318 24 C -0.064 4.064 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.552 -5.843 -7.556 9.567 hybrid contribution -0.479 -1.246 -0.622 1.472 sum -1.032 -7.088 -8.178 10.871 Atomic orbital electron populations 1.22665 0.81353 1.02111 1.00523 1.88039 1.19943 1.28590 1.94171 1.22689 0.92435 0.79154 0.86181 1.22017 0.92354 1.03601 1.03039 1.22161 0.96525 0.96409 0.85737 1.87704 1.73945 1.53581 1.14648 1.18867 0.97010 0.88537 0.78245 0.94905 1.22255 0.96500 1.04311 1.40910 0.92037 1.25934 1.00350 0.99024 0.92572 1.70876 1.03409 1.39284 1.39799 0.83540 0.74551 0.75640 0.76674 1.20581 1.21176 1.21116 1.20348 0.92900 0.93483 0.96627 1.20881 0.98942 0.93965 0.98387 1.21009 0.99315 0.99146 0.95320 1.20853 0.98001 0.99014 0.98913 1.20933 0.99465 0.95196 0.98692 1.20942 0.99472 0.98368 0.94968 1.87975 1.82106 1.46480 1.15233 1.22669 1.00788 0.98106 0.84822 0.93883 0.89998 0.93530 0.89422 0.92451 0.90304 0.93959 0.91594 0.91879 0.86437 0.87296 0.87417 0.87190 0.86593 0.93535 0.89874 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.11 101.05 1.02 1.45 16 2 O -0.39 -6.69 9.56 -62.40 -0.60 -7.29 16 3 C 0.27 4.76 0.84 -26.73 -0.02 4.73 16 4 C -0.15 -2.47 8.56 37.16 0.32 -2.15 16 5 C 0.07 1.43 4.92 37.15 0.18 1.61 16 6 O -0.38 -8.69 8.25 -40.08 -0.33 -9.02 16 7 C 0.23 5.71 2.19 -29.03 -0.06 5.65 16 8 H 0.03 0.87 5.99 -51.93 -0.31 0.56 16 9 C -0.60 -16.35 8.62 -34.44 -0.30 -16.65 16 10 H 0.06 1.70 7.82 -52.48 -0.41 1.29 16 11 C 0.03 0.74 5.45 -17.82 -0.10 0.64 16 12 N -0.90 -25.56 13.63 55.43 0.76 -24.80 16 13 Si 1.07 24.50 29.91 -169.99 -5.08 19.41 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 C -0.03 -0.77 4.98 -104.62 -0.52 -1.29 16 18 C -0.10 -2.24 9.35 -39.58 -0.37 -2.61 16 19 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 20 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 21 C -0.12 -2.38 10.05 -39.59 -0.40 -2.78 16 22 C -0.12 -2.64 9.54 -39.59 -0.38 -3.01 16 23 O -0.40 -6.41 9.60 -59.04 -0.57 -6.98 16 24 C 0.03 0.39 10.10 101.05 1.02 1.41 16 25 H 0.04 0.57 6.59 -51.93 -0.34 0.22 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.73 6.44 -51.92 -0.33 0.39 16 28 H 0.09 1.54 7.56 -51.93 -0.39 1.14 16 29 H 0.06 0.79 6.65 -51.93 -0.35 0.44 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.04 0.86 6.36 -51.93 -0.33 0.53 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.27 7.53 5.21 -40.82 -0.21 7.32 16 34 H 0.12 2.52 7.67 -52.48 -0.40 2.12 16 35 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.12 2.62 6.86 -52.48 -0.36 2.26 16 39 H 0.05 0.54 6.59 -51.93 -0.34 0.20 16 40 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 41 H 0.04 0.51 6.54 -51.93 -0.34 0.17 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -30.02 334.08 -7.07 -37.08 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.88 Total: 5.44 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -0.40 Total: -18.89 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.76 Total: -24.80 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -1.49 Total: -23.29 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.08 Total: 19.41 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.02 -7.07 -37.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224679009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.063 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds