Wall clock time and date at job start Tue Mar 31 2020 01:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00044 * 2 1 4 4 C 1.53001 * 109.47057 * 185.00271 * 3 2 1 5 5 C 1.52991 * 109.47334 * 65.00207 * 3 2 1 6 6 O 1.42904 * 109.47226 * 64.99582 * 5 3 2 7 7 C 1.42899 * 113.99621 * 179.97438 * 6 5 3 8 8 H 1.08997 * 109.47399 * 30.00943 * 7 6 5 9 9 C 1.50703 * 109.47403 * 270.00422 * 7 6 5 10 10 H 1.08003 * 119.99825 * 325.09239 * 9 7 6 11 11 C 1.37871 * 119.99991 * 145.09529 * 9 7 6 12 12 N 1.31516 * 120.00307 * 6.05154 * 11 9 7 13 13 Si 1.86806 * 119.99860 * 186.05452 * 11 9 7 14 14 H 1.48504 * 109.46805 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.46830 * 299.99670 * 13 11 9 16 16 H 1.48497 * 109.47221 * 60.00020 * 13 11 9 17 17 C 1.50705 * 109.46677 * 150.00485 * 7 6 5 18 18 C 1.38235 * 119.99820 * 36.27779 * 17 7 6 19 19 C 1.38241 * 119.99878 * 179.78853 * 18 17 7 20 20 C 1.38237 * 119.99736 * 0.44060 * 19 18 17 21 21 C 1.38232 * 119.99927 * 359.80611 * 20 19 18 22 22 C 1.38227 * 120.00145 * 359.97438 * 21 20 19 23 23 O 1.42904 * 109.46859 * 304.99856 * 3 2 1 24 24 C 1.42901 * 113.99925 * 305.00333 * 23 3 2 25 25 H 1.08998 * 109.47537 * 60.00088 * 1 2 3 26 26 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47058 * 300.00040 * 1 2 3 28 28 H 1.09004 * 109.47033 * 300.00283 * 4 3 2 29 29 H 1.09002 * 109.47089 * 59.99565 * 4 3 2 30 30 H 1.08990 * 109.47248 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47037 * 305.00493 * 5 3 2 32 32 H 1.08997 * 109.47195 * 185.00356 * 5 3 2 33 33 H 0.96998 * 119.99398 * 355.51692 * 12 11 9 34 34 H 1.08005 * 120.00321 * 359.97438 * 18 17 7 35 35 H 1.08003 * 120.00070 * 180.27097 * 19 18 17 36 36 H 1.08000 * 119.99815 * 179.83636 * 20 19 18 37 37 H 1.08004 * 119.99682 * 180.02562 * 21 20 19 38 38 H 1.08007 * 119.99974 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.47188 * 60.00290 * 24 23 3 40 40 H 1.09007 * 109.46505 * 180.02562 * 24 23 3 41 41 H 1.08993 * 109.47208 * 299.99603 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5304 1.1869 -0.1258 5 6 1.6608 2.0193 1.3073 6 8 2.2713 1.3336 2.4024 7 6 2.0067 1.9227 3.6771 8 1 1.0314 2.4089 3.6573 9 6 3.0705 2.9433 3.9896 10 1 4.0884 2.7780 3.6684 11 6 2.7445 4.0880 4.6855 12 7 1.5347 4.2351 5.1797 13 14 4.0213 5.4302 4.9262 14 1 3.4246 6.5476 5.7012 15 1 5.1848 4.8795 5.6665 16 1 4.4690 5.9308 3.6018 17 6 2.0121 0.8509 4.7366 18 6 2.8998 -0.2050 4.6469 19 6 2.9078 -1.1858 5.6210 20 6 2.0219 -1.1156 6.6799 21 6 1.1308 -0.0624 6.7667 22 6 1.1259 0.9208 5.7951 23 8 1.4980 2.0549 -1.1037 24 6 1.6719 1.4167 -2.3704 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.9212 0.6151 0.7160 29 1 3.7794 0.6783 -1.0572 30 1 3.9737 2.1826 -0.1263 31 1 0.5789 2.0252 1.4401 32 1 2.0280 3.0450 1.2706 33 1 0.8530 3.5688 4.9997 34 1 3.5892 -0.2620 3.8175 35 1 3.6044 -2.0085 5.5534 36 1 2.0263 -1.8832 7.4395 37 1 0.4389 -0.0073 7.5942 38 1 0.4293 1.7434 5.8628 39 1 1.1567 0.4562 -2.3670 40 1 1.2576 2.0490 -3.1557 41 1 2.7345 1.2584 -2.5546 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224679009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:49 Heat of formation + Delta-G solvation = -133.614463 kcal Electronic energy + Delta-G solvation = -22935.073625 eV Core-core repulsion = 19586.631185 eV Total energy + Delta-G solvation = -3348.442440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.93162 -40.15302 -38.25936 -36.94344 -35.25829 -32.82332 -31.78532 -31.63968 -28.82610 -28.11834 -27.59746 -26.50680 -25.00545 -23.30683 -22.11666 -21.92905 -19.30676 -18.92460 -17.97797 -17.36133 -17.17460 -16.85118 -16.36578 -15.92371 -15.70723 -15.55891 -15.20475 -15.15866 -14.67293 -14.55480 -14.17363 -14.06740 -13.66458 -13.56345 -13.34269 -13.14679 -12.96451 -12.74171 -12.69497 -12.37066 -12.00546 -11.90806 -11.75334 -11.57646 -11.52151 -11.05226 -10.85809 -10.67382 -10.26671 -9.72061 -9.41402 -8.69051 -6.46455 0.59465 0.62864 1.49364 1.56207 1.76107 2.08022 2.49394 2.65142 2.97926 3.14630 3.41496 3.69963 3.77864 4.09867 4.21131 4.26014 4.31283 4.37584 4.38541 4.43293 4.46953 4.50869 4.51758 4.61433 4.67235 4.72254 4.78750 4.82397 4.84651 4.89505 5.17368 5.21949 5.27567 5.49485 5.66145 5.69866 5.77335 5.89063 5.94404 6.24211 6.34430 6.45765 6.54382 7.33830 8.64216 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.006897 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.329397 B = 4058.803207 C = 5542.055848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.280 3.720 4 C -0.149 4.149 5 C 0.066 3.934 6 O -0.381 6.381 7 C 0.235 3.765 8 H 0.005 0.995 9 C -0.614 4.614 10 H 0.049 0.951 11 C -0.017 4.017 12 N -0.920 5.920 13 Si 1.110 2.890 14 H -0.280 1.280 15 H -0.273 1.273 16 H -0.269 1.269 17 C -0.065 4.065 18 C -0.121 4.121 19 C -0.122 4.122 20 C -0.136 4.136 21 C -0.123 4.123 22 C -0.142 4.142 23 O -0.411 6.411 24 C 0.024 3.976 25 H 0.058 0.942 26 H 0.107 0.893 27 H 0.026 0.974 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.260 0.740 34 H 0.109 0.891 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.140 0.860 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.108 0.892 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 -8.998 -8.314 12.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C 0.203 3.797 4 C -0.206 4.206 5 C -0.012 4.012 6 O -0.300 6.300 7 C 0.179 3.821 8 H 0.022 0.978 9 C -0.651 4.651 10 H 0.067 0.933 11 C -0.218 4.218 12 N -0.557 5.557 13 Si 0.931 3.069 14 H -0.205 1.205 15 H -0.198 1.198 16 H -0.194 1.194 17 C -0.066 4.066 18 C -0.139 4.139 19 C -0.140 4.140 20 C -0.154 4.154 21 C -0.141 4.141 22 C -0.161 4.161 23 O -0.333 6.333 24 C -0.071 4.071 25 H 0.077 0.923 26 H 0.126 0.874 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.164 0.836 36 H 0.172 0.828 37 H 0.158 0.842 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.127 0.873 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.246 -7.702 -7.599 10.822 hybrid contribution -0.811 -0.791 -0.669 1.315 sum -0.564 -8.492 -8.268 11.866 Atomic orbital electron populations 1.22836 0.80102 1.03760 1.00295 1.88022 1.21362 1.28196 1.94174 1.22393 0.93189 0.78942 0.85149 1.21979 0.91286 1.03610 1.03744 1.22261 0.96016 0.95813 0.87065 1.87678 1.74209 1.53537 1.14617 1.18671 0.94820 0.89073 0.79536 0.97754 1.22436 0.96313 1.05521 1.40865 0.93289 1.27217 1.01358 1.01040 0.92134 1.70955 1.04016 1.39430 1.41316 0.83027 0.72899 0.73432 0.77506 1.20495 1.19829 1.19431 1.20312 0.94979 0.94502 0.96793 1.20941 0.98796 0.94660 0.99543 1.21419 0.99611 0.98817 0.94169 1.21371 0.96009 0.98951 0.99061 1.21304 1.00074 0.94373 0.98341 1.20966 0.99669 0.99292 0.96130 1.87950 1.82210 1.46879 1.16270 1.22974 1.01968 0.98832 0.83325 0.92332 0.87432 0.95513 0.91225 0.89559 0.90439 0.94554 0.93779 0.92848 0.87299 0.83562 0.82812 0.84178 0.88572 0.92975 0.87331 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.11 113.37 1.15 1.88 16 2 O -0.40 -13.57 9.56 -123.01 -1.18 -14.74 16 3 C 0.28 9.89 0.84 30.59 0.03 9.92 16 4 C -0.15 -4.79 8.56 71.98 0.62 -4.18 16 5 C 0.07 2.87 4.92 71.98 0.35 3.23 16 6 O -0.38 -18.44 8.25 -144.34 -1.19 -19.63 16 7 C 0.24 12.44 2.19 29.10 0.06 12.50 16 8 H 0.00 0.27 5.99 -2.39 -0.01 0.25 16 9 C -0.61 -34.87 8.62 25.60 0.22 -34.65 16 10 H 0.05 2.83 7.82 -2.91 -0.02 2.81 16 11 C -0.02 -0.97 5.45 84.65 0.46 -0.51 16 12 N -0.92 -54.67 13.63 21.45 0.29 -54.37 16 13 Si 1.11 50.12 29.91 68.60 2.05 52.17 16 14 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 17 C -0.07 -3.18 4.98 -19.86 -0.10 -3.28 16 18 C -0.12 -5.24 9.35 22.27 0.21 -5.03 16 19 C -0.12 -4.22 10.05 22.27 0.22 -4.00 16 20 C -0.14 -4.34 10.05 22.27 0.22 -4.11 16 21 C -0.12 -4.47 10.05 22.27 0.22 -4.24 16 22 C -0.14 -6.45 9.54 22.27 0.21 -6.24 16 23 O -0.41 -13.07 9.60 -126.21 -1.21 -14.28 16 24 C 0.02 0.53 10.10 113.37 1.15 1.68 16 25 H 0.06 1.48 6.59 -2.39 -0.02 1.46 16 26 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.03 0.86 6.44 -2.38 -0.02 0.84 16 28 H 0.07 2.48 7.56 -2.38 -0.02 2.46 16 29 H 0.09 2.23 6.65 -2.39 -0.02 2.21 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.04 1.59 6.36 -2.39 -0.02 1.57 16 32 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.26 15.52 5.21 -92.71 -0.48 15.04 16 34 H 0.11 4.77 7.67 -2.91 -0.02 4.75 16 35 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 36 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 38 H 0.10 4.63 6.86 -2.91 -0.02 4.61 16 39 H 0.05 1.10 6.59 -2.39 -0.02 1.08 16 40 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.06 1.13 6.54 -2.39 -0.02 1.11 16 Total: -1.00 -67.82 334.08 5.09 -62.73 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 1.30 Total: 25.15 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 5.03 Total: -37.03 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.29 Total: -54.37 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -3.58 Total: -48.65 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.05 Total: 52.17 kcal Total: -67.82 5.09 -62.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224679009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.884 kcal (2) G-P(sol) polarization free energy of solvation -67.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds