Wall clock time and date at job start Tue Mar 31 2020 01:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00166 * 2 1 4 4 H 1.48502 * 109.47573 * 270.00035 * 3 2 1 5 5 H 1.48494 * 109.47154 * 30.00554 * 3 2 1 6 6 H 1.48504 * 109.46949 * 150.00128 * 3 2 1 7 7 C 1.37881 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00000 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00003 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47061 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47075 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47336 * 179.97438 * 12 11 10 14 14 C 1.42931 * 114.00007 * 179.97438 * 13 12 11 15 15 H 1.08784 * 109.47686 * 330.62417 * 14 13 12 16 16 C 1.57609 * 109.39325 * 210.23544 * 14 13 12 17 17 H 1.09203 * 117.03092 * 43.09265 * 16 14 13 18 18 C 1.59986 * 106.65816 * 176.75136 * 16 14 13 19 19 C 1.48414 * 97.41342 * 46.77411 * 18 16 14 20 20 H 1.12304 * 87.62352 * 300.62142 * 19 18 16 21 21 C 1.47692 * 142.31469 * 238.23611 * 19 18 16 22 22 O 1.18976 * 133.82089 * 275.59517 * 21 19 18 23 23 O 1.39404 * 92.61650 * 95.59334 * 21 19 18 24 24 C 1.47841 * 112.52045 * 25.47573 * 23 21 19 25 25 H 1.10015 * 113.22076 * 136.67198 * 24 23 21 26 26 C 1.58108 * 110.32699 * 31.71853 * 19 18 16 27 27 H 1.08958 * 120.83626 * 137.56846 * 26 19 18 28 28 C 1.56284 * 101.01343 * 2.21041 * 26 19 18 29 29 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46845 * 60.00078 * 9 7 2 31 31 H 1.08998 * 109.47495 * 300.00260 * 9 7 2 32 32 H 1.09002 * 109.47122 * 60.00376 * 10 9 7 33 33 H 1.08995 * 109.47555 * 300.00086 * 10 9 7 34 34 H 1.09002 * 109.46772 * 60.00243 * 11 10 9 35 35 H 1.08995 * 109.47065 * 300.00467 * 11 10 9 36 36 H 1.09005 * 109.46868 * 59.99992 * 12 11 10 37 37 H 1.08998 * 109.47284 * 300.00599 * 12 11 10 38 38 H 1.09129 * 111.92752 * 289.61339 * 18 16 14 39 39 H 1.09134 * 111.92313 * 163.92609 * 18 16 14 40 40 H 1.09055 * 111.73316 * 81.61270 * 28 26 19 41 41 H 1.08991 * 111.81376 * 206.90119 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0022 12 6 6.0614 -4.0791 -0.0015 13 8 7.4904 -4.0792 -0.0032 14 6 8.0717 -5.3850 -0.0021 15 1 7.4033 -6.0791 0.5028 16 6 9.4588 -5.3397 0.7448 17 1 9.5045 -4.7656 1.6726 18 6 10.0083 -6.8418 0.7832 19 6 9.7504 -7.1765 -0.6395 20 1 8.6660 -6.9581 -0.4457 21 6 9.0217 -8.1278 -1.5029 22 8 9.2642 -9.2163 -1.9175 23 8 7.9375 -7.2637 -1.6487 24 6 8.3149 -5.8459 -1.4668 25 1 7.8612 -5.1770 -2.2132 26 6 9.9014 -5.8878 -1.5430 27 1 10.4151 -5.9356 -2.5027 28 6 10.3256 -4.8250 -0.4786 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6805 0.8889 31 1 3.8745 -0.6801 -0.8911 32 1 3.6577 -3.1506 -0.8908 33 1 3.6584 -3.1503 0.8892 34 1 5.9155 -2.1225 0.8873 35 1 5.9140 -2.1231 -0.8926 36 1 5.6973 -4.5937 -0.8908 37 1 5.6987 -4.5923 0.8892 38 1 9.4274 -7.4710 1.4597 39 1 11.0723 -6.8804 1.0225 40 1 11.3922 -4.8783 -0.2576 41 1 10.0356 -3.8170 -0.7748 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224692663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:11 Heat of formation + Delta-G solvation = 52.095821 kcal Electronic energy + Delta-G solvation = -21878.265721 eV Core-core repulsion = 18537.876283 eV Total energy + Delta-G solvation = -3340.389438 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.45386 -39.40452 -37.97605 -36.50433 -34.73549 -32.37732 -30.27841 -29.54992 -28.86577 -27.90642 -25.30386 -24.46175 -21.68696 -20.89293 -20.59845 -20.10914 -19.99027 -18.34591 -17.06772 -16.88352 -16.66388 -16.26922 -15.83857 -15.23490 -14.93622 -14.48481 -14.28131 -13.86707 -13.55973 -13.33591 -13.03501 -12.70526 -12.41885 -12.12085 -11.97589 -11.79619 -11.68459 -11.61301 -11.44864 -11.18039 -10.97318 -10.76461 -10.71503 -10.21201 -9.95520 -9.78275 -9.73011 -9.61943 -9.20071 -9.14952 -8.55340 -6.05773 -4.04016 1.37205 2.02965 2.60701 3.29686 3.31031 3.37167 3.40839 3.46182 3.72649 3.79927 4.15109 4.27913 4.43997 4.46824 4.52964 4.62772 4.76270 4.99976 5.02729 5.16279 5.25011 5.28614 5.32209 5.42978 5.44924 5.49544 5.54252 5.61152 5.68401 5.76427 5.90060 5.91955 6.24550 6.54325 6.64066 6.81076 6.97247 7.01670 7.27456 7.40572 7.77964 8.52311 8.99063 9.56744 11.07770 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.035012 B = 0.002888 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.537085 B = 9693.982683 C =10110.508547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.101 4.101 11 C -0.118 4.118 12 C 0.056 3.944 13 O -0.365 6.365 14 C 0.064 3.936 15 H 0.075 0.925 16 C -0.099 4.099 17 H 0.133 0.867 18 C -0.035 4.035 19 C -0.386 4.386 20 H 0.152 0.848 21 C 0.571 3.429 22 O -0.398 6.398 23 O -0.399 6.399 24 C 0.065 3.935 25 H 0.141 0.859 26 C -0.096 4.096 27 H 0.136 0.864 28 C -0.112 4.112 29 H 0.263 0.737 30 H 0.016 0.984 31 H 0.012 0.988 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.830 -11.910 0.413 26.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.050 4.050 10 C -0.139 4.139 11 C -0.155 4.155 12 C -0.020 4.020 13 O -0.284 6.284 14 C 0.005 3.995 15 H 0.093 0.907 16 C -0.117 4.117 17 H 0.151 0.849 18 C -0.072 4.072 19 C -0.404 4.404 20 H 0.167 0.833 21 C 0.409 3.591 22 O -0.273 6.273 23 O -0.322 6.322 24 C 0.011 3.989 25 H 0.158 0.842 26 C -0.114 4.114 27 H 0.154 0.846 28 C -0.149 4.149 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 23.570 -12.199 0.158 26.541 hybrid contribution -0.069 0.614 -0.117 0.629 sum 23.501 -11.585 0.041 26.201 Atomic orbital electron populations 1.69916 1.06339 1.26906 1.51184 1.25049 0.94743 0.99246 0.94558 0.86757 0.80361 0.83535 0.78515 1.20293 1.21408 1.18958 1.21163 0.89580 0.94461 1.50812 0.91089 1.19558 0.97054 0.92098 0.96322 1.21410 0.90878 1.00295 1.01270 1.21675 0.97642 0.93394 1.02834 1.22894 0.78886 0.99762 1.00435 1.87969 1.21186 1.24804 1.94458 1.23982 0.96084 0.86922 0.92496 0.90688 1.25257 0.91614 0.96272 0.98540 0.84921 1.21503 1.02371 0.93881 0.89439 1.25566 1.18033 0.99214 0.97607 0.83292 1.20713 0.78976 0.83208 0.76217 1.90238 1.69115 1.17726 1.50194 1.88289 1.37883 1.18986 1.87077 1.26518 0.96802 0.76613 0.98948 0.84153 1.25215 0.93664 0.93419 0.99130 0.84624 1.23491 1.00242 0.98271 0.92899 0.92733 0.96568 0.97003 0.92667 0.92644 0.91519 0.91557 0.93057 0.92994 0.90371 0.89795 0.89816 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -1.90 5.15 -26.73 -0.14 -2.04 16 11 C -0.12 -1.77 5.58 -26.73 -0.15 -1.92 16 12 C 0.06 0.70 5.77 37.16 0.21 0.91 16 13 O -0.37 -4.10 9.85 -35.23 -0.35 -4.45 16 14 C 0.06 0.58 2.11 -22.90 -0.05 0.53 16 15 H 0.08 0.69 7.45 -52.05 -0.39 0.30 16 16 C -0.10 -0.67 5.37 -81.11 -0.44 -1.10 16 17 H 0.13 0.77 8.16 -51.81 -0.42 0.35 16 18 C -0.03 -0.22 6.58 -25.03 -0.16 -0.39 16 19 C -0.39 -3.31 5.74 -92.61 -0.53 -3.84 16 20 H 0.15 1.37 1.14 -171.94 -0.20 1.18 16 21 C 0.57 6.42 9.16 34.59 0.32 6.74 16 22 O -0.40 -5.42 17.87 -16.03 -0.29 -5.71 16 23 O -0.40 -4.48 10.46 -54.66 -0.57 -5.05 16 24 C 0.06 0.58 4.80 -22.15 -0.11 0.47 16 25 H 0.14 1.20 8.17 -51.35 -0.42 0.78 16 26 C -0.10 -0.70 6.02 -82.78 -0.50 -1.20 16 27 H 0.14 0.82 8.14 -51.95 -0.42 0.40 16 28 C -0.11 -0.71 6.25 -21.92 -0.14 -0.85 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 31 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.08 0.46 8.15 -51.86 -0.42 0.04 16 39 H 0.08 0.44 8.15 -51.85 -0.42 0.02 16 40 H 0.08 0.43 8.14 -51.90 -0.42 0.01 16 41 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 LS Contribution 327.48 15.07 4.94 4.94 Total: -1.00 -32.02 327.48 -8.81 -40.82 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -6.42 Total: -3.82 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -2.22 Total: -16.51 kcal Atomic # 7 Polarization: -27.97 SS G_CDS: 0.77 Total: -27.20 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -1.21 Total: -15.21 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.02 -8.81 -40.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224692663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.919 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds