Wall clock time and date at job start Tue Mar 31 2020 01:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00166 * 2 1 4 4 H 1.48502 * 109.47573 * 270.00035 * 3 2 1 5 5 H 1.48494 * 109.47154 * 30.00554 * 3 2 1 6 6 H 1.48504 * 109.46949 * 150.00128 * 3 2 1 7 7 C 1.37881 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00000 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00003 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47061 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47075 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47336 * 179.97438 * 12 11 10 14 14 C 1.42931 * 114.00007 * 179.97438 * 13 12 11 15 15 H 1.08784 * 109.47686 * 330.62417 * 14 13 12 16 16 C 1.57609 * 109.39325 * 210.23544 * 14 13 12 17 17 H 1.09203 * 117.03092 * 43.09265 * 16 14 13 18 18 C 1.59986 * 106.65816 * 176.75136 * 16 14 13 19 19 C 1.48414 * 97.41342 * 46.77411 * 18 16 14 20 20 H 1.12304 * 87.62352 * 300.62142 * 19 18 16 21 21 C 1.47692 * 142.31469 * 238.23611 * 19 18 16 22 22 O 1.18976 * 133.82089 * 275.59517 * 21 19 18 23 23 O 1.39404 * 92.61650 * 95.59334 * 21 19 18 24 24 C 1.47841 * 112.52045 * 25.47573 * 23 21 19 25 25 H 1.10015 * 113.22076 * 136.67198 * 24 23 21 26 26 C 1.58108 * 110.32699 * 31.71853 * 19 18 16 27 27 H 1.08958 * 120.83626 * 137.56846 * 26 19 18 28 28 C 1.56284 * 101.01343 * 2.21041 * 26 19 18 29 29 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46845 * 60.00078 * 9 7 2 31 31 H 1.08998 * 109.47495 * 300.00260 * 9 7 2 32 32 H 1.09002 * 109.47122 * 60.00376 * 10 9 7 33 33 H 1.08995 * 109.47555 * 300.00086 * 10 9 7 34 34 H 1.09002 * 109.46772 * 60.00243 * 11 10 9 35 35 H 1.08995 * 109.47065 * 300.00467 * 11 10 9 36 36 H 1.09005 * 109.46868 * 59.99992 * 12 11 10 37 37 H 1.08998 * 109.47284 * 300.00599 * 12 11 10 38 38 H 1.09129 * 111.92752 * 289.61339 * 18 16 14 39 39 H 1.09134 * 111.92313 * 163.92609 * 18 16 14 40 40 H 1.09055 * 111.73316 * 81.61270 * 28 26 19 41 41 H 1.08991 * 111.81376 * 206.90119 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0022 12 6 6.0614 -4.0791 -0.0015 13 8 7.4904 -4.0792 -0.0032 14 6 8.0717 -5.3850 -0.0021 15 1 7.4033 -6.0791 0.5028 16 6 9.4588 -5.3397 0.7448 17 1 9.5045 -4.7656 1.6726 18 6 10.0083 -6.8418 0.7832 19 6 9.7504 -7.1765 -0.6395 20 1 8.6660 -6.9581 -0.4457 21 6 9.0217 -8.1278 -1.5029 22 8 9.2642 -9.2163 -1.9175 23 8 7.9375 -7.2637 -1.6487 24 6 8.3149 -5.8459 -1.4668 25 1 7.8612 -5.1770 -2.2132 26 6 9.9014 -5.8878 -1.5430 27 1 10.4151 -5.9356 -2.5027 28 6 10.3256 -4.8250 -0.4786 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6805 0.8889 31 1 3.8745 -0.6801 -0.8911 32 1 3.6577 -3.1506 -0.8908 33 1 3.6584 -3.1503 0.8892 34 1 5.9155 -2.1225 0.8873 35 1 5.9140 -2.1231 -0.8926 36 1 5.6973 -4.5937 -0.8908 37 1 5.6987 -4.5923 0.8892 38 1 9.4274 -7.4710 1.4597 39 1 11.0723 -6.8804 1.0225 40 1 11.3922 -4.8783 -0.2576 41 1 10.0356 -3.8170 -0.7748 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224692663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:10 Heat of formation + Delta-G solvation = 33.037030 kcal Electronic energy + Delta-G solvation = -21879.092172 eV Core-core repulsion = 18537.876283 eV Total energy + Delta-G solvation = -3341.215889 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.14308 -40.28615 -38.88955 -37.29499 -36.28888 -34.34694 -31.33008 -30.55744 -29.68900 -28.63450 -26.68786 -25.43430 -23.12829 -21.88383 -21.44076 -21.10683 -20.79021 -19.16287 -18.83028 -17.90245 -17.58029 -17.07505 -16.83768 -16.36287 -15.99743 -15.69431 -15.45581 -14.86806 -14.80166 -14.44851 -14.00095 -13.97369 -13.72181 -13.26045 -13.07019 -12.92558 -12.68986 -12.42916 -12.39429 -12.18125 -12.06699 -11.96091 -11.74499 -11.51663 -11.42816 -11.36588 -11.26840 -10.93778 -10.76227 -10.60797 -9.81168 -8.29433 -6.33992 0.54325 1.28209 1.37250 1.39189 1.51575 1.87451 2.37187 2.56827 2.83029 3.03801 3.06223 3.17684 3.55231 3.66471 3.87403 3.94999 4.02544 4.04857 4.07703 4.25475 4.32278 4.43631 4.47606 4.55950 4.59333 4.79755 4.85676 4.92698 4.98954 5.03450 5.06520 5.10442 5.12706 5.14253 5.19628 5.21529 5.54883 5.62978 5.67980 6.08200 6.14838 6.28842 6.74792 7.31072 8.87613 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.035012 B = 0.002888 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.537085 B = 9693.982683 C =10110.508547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.536 4.536 8 H 0.029 0.971 9 C -0.012 4.012 10 C -0.095 4.095 11 C -0.107 4.107 12 C 0.063 3.937 13 O -0.368 6.368 14 C 0.059 3.941 15 H 0.070 0.930 16 C -0.090 4.090 17 H 0.149 0.851 18 C -0.031 4.031 19 C -0.380 4.380 20 H 0.144 0.856 21 C 0.565 3.435 22 O -0.433 6.433 23 O -0.419 6.419 24 C 0.055 3.945 25 H 0.142 0.858 26 C -0.085 4.085 27 H 0.149 0.851 28 C -0.106 4.106 29 H 0.266 0.734 30 H 0.022 0.978 31 H 0.020 0.980 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.014 -10.632 1.056 29.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.574 4.574 8 H 0.048 0.952 9 C -0.050 4.050 10 C -0.133 4.133 11 C -0.145 4.145 12 C -0.014 4.014 13 O -0.287 6.287 14 C 0.000 4.000 15 H 0.088 0.912 16 C -0.108 4.108 17 H 0.167 0.833 18 C -0.068 4.068 19 C -0.399 4.399 20 H 0.160 0.840 21 C 0.406 3.594 22 O -0.311 6.311 23 O -0.344 6.344 24 C 0.003 3.997 25 H 0.160 0.840 26 C -0.104 4.104 27 H 0.166 0.834 28 C -0.143 4.143 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 26.772 -10.925 0.808 28.927 hybrid contribution -1.153 0.116 -0.338 1.207 sum 25.619 -10.810 0.469 27.810 Atomic orbital electron populations 1.70081 1.08457 1.28212 1.52784 1.26102 0.95661 1.03829 0.94080 0.85592 0.79562 0.77837 0.79259 1.19128 1.21085 1.16597 1.21573 0.92477 0.93030 1.50350 0.95246 1.19533 0.93526 0.95202 0.96698 1.21262 0.93920 0.97298 1.00848 1.21456 0.94432 0.95315 1.03274 1.22662 0.79964 0.97953 1.00789 1.87932 1.20039 1.26149 1.94565 1.24182 0.97280 0.85733 0.92772 0.91190 1.25319 0.89722 0.96580 0.99142 0.83347 1.21621 1.03760 0.93587 0.87828 1.25621 1.17792 0.97873 0.98564 0.84025 1.21109 0.79315 0.82953 0.76071 1.90206 1.70034 1.19177 1.51633 1.88272 1.38699 1.20122 1.87259 1.26653 0.98490 0.75429 0.99174 0.84049 1.25372 0.92199 0.92861 0.99923 0.83371 1.23511 1.01331 0.97511 0.91933 0.92513 0.95972 0.96187 0.93271 0.93097 0.91027 0.91120 0.93035 0.92506 0.89921 0.87772 0.87747 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 2 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 3 Si 0.95 44.02 27.47 68.60 1.88 45.90 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 7 C -0.54 -31.12 9.66 25.60 0.25 -30.88 16 8 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 10 C -0.10 -3.53 5.15 30.59 0.16 -3.38 16 11 C -0.11 -3.00 5.58 30.59 0.17 -2.83 16 12 C 0.06 1.45 5.77 71.98 0.42 1.86 16 13 O -0.37 -7.37 9.85 -148.98 -1.47 -8.84 16 14 C 0.06 0.94 2.11 33.07 0.07 1.01 16 15 H 0.07 1.19 7.45 -2.50 -0.02 1.17 16 16 C -0.09 -0.92 5.37 -4.63 -0.02 -0.94 16 17 H 0.15 1.13 8.16 -2.28 -0.02 1.11 16 18 C -0.03 -0.31 6.58 31.70 0.21 -0.10 16 19 C -0.38 -5.83 5.74 -12.08 -0.07 -5.90 16 20 H 0.14 2.43 1.14 -225.59 -0.26 2.17 16 21 C 0.57 12.65 9.16 70.32 0.64 13.29 16 22 O -0.43 -12.08 17.87 25.96 0.46 -11.61 16 23 O -0.42 -9.38 10.46 -112.25 -1.17 -10.56 16 24 C 0.06 0.92 4.80 33.56 0.16 1.08 16 25 H 0.14 2.26 8.17 -1.84 -0.02 2.25 16 26 C -0.09 -1.05 6.02 -5.71 -0.03 -1.08 16 27 H 0.15 1.44 8.14 -2.41 -0.02 1.42 16 28 C -0.11 -0.97 6.25 33.71 0.21 -0.76 16 29 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 30 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 31 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.06 1.26 8.09 -2.39 -0.02 1.24 16 38 H 0.08 0.77 8.15 -2.32 -0.02 0.75 16 39 H 0.10 0.68 8.15 -2.32 -0.02 0.66 16 40 H 0.10 0.59 8.14 -2.36 -0.02 0.57 16 41 H 0.09 0.90 8.05 -2.39 -0.02 0.88 16 Total: -1.00 -70.67 327.48 3.46 -67.21 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 0.71 Total: 6.67 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 2.74 Total: -28.62 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.30 Total: -60.16 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -2.18 Total: -31.01 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -70.67 3.46 -67.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224692663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.250 kcal (2) G-P(sol) polarization free energy of solvation -70.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds