Wall clock time and date at job start Tue Mar 31 2020 01:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 5 5 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46929 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.47189 * 179.97438 * 12 11 10 14 14 C 1.42989 * 113.99880 * 179.97438 * 13 12 11 15 15 H 1.09371 * 111.16528 * 325.73313 * 14 13 12 16 16 C 1.59977 * 112.41557 * 199.30074 * 14 13 12 17 17 H 1.09248 * 117.57827 * 63.94664 * 16 14 13 18 18 C 1.57530 * 105.59732 * 196.78175 * 16 14 13 19 19 C 1.56698 * 109.30446 * 67.16874 * 18 16 14 20 20 H 1.09952 * 115.34570 * 126.68321 * 19 18 16 21 21 C 1.54953 * 107.78560 * 257.29938 * 19 18 16 22 22 O 1.21076 * 125.26372 * 271.63565 * 21 19 18 23 23 O 1.39368 * 111.07239 * 91.69443 * 21 19 18 24 24 C 1.41511 * 93.66083 * 333.41104 * 23 21 19 25 25 H 1.10566 * 76.32279 * 324.23201 * 24 23 21 26 26 C 1.57490 * 104.82587 * 60.77502 * 24 23 21 27 27 H 1.09243 * 120.75447 * 56.79312 * 26 24 23 28 28 C 1.55995 * 101.78488 * 191.91385 * 26 24 23 29 29 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 31 31 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 32 32 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 33 33 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 34 34 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 35 35 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 36 36 H 1.09006 * 109.47297 * 60.00171 * 12 11 10 37 37 H 1.09004 * 109.47429 * 300.00346 * 12 11 10 38 38 H 1.08707 * 109.95621 * 305.74616 * 18 16 14 39 39 H 1.09290 * 108.93651 * 186.44489 * 18 16 14 40 40 H 1.09126 * 111.63148 * 151.16168 * 28 26 24 41 41 H 1.08909 * 111.93300 * 276.39573 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 6 2.4746 -6.1499 0.0005 13 8 1.7601 -7.3875 0.0017 14 6 2.6006 -8.5443 0.0007 15 1 3.5138 -8.3684 -0.5749 16 6 1.8293 -9.8584 -0.4868 17 1 1.4619 -9.8768 -1.5155 18 6 2.7212 -11.0704 -0.0208 19 6 2.7168 -11.1452 1.5443 20 1 2.4351 -12.1198 1.9682 21 6 4.0609 -10.5630 2.0498 22 8 5.0808 -11.1958 2.2093 23 8 3.9512 -9.1973 2.3047 24 6 2.9019 -9.0154 1.3728 25 1 3.5439 -9.7799 0.8976 26 6 1.7359 -9.9370 1.8940 27 1 1.3375 -9.8163 2.9039 28 6 0.7585 -9.9324 0.6782 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5566 0.8903 32 1 2.8720 -3.6043 -0.8894 33 1 2.8720 -3.6043 0.8906 34 1 0.8534 -5.0451 -0.8886 35 1 0.8540 -5.0446 0.8914 36 1 3.1019 -6.0922 0.8901 37 1 3.1007 -6.0922 -0.8899 38 1 3.7355 -10.9492 -0.3927 39 1 2.3030 -11.9950 -0.4265 40 1 0.1781 -10.8550 0.6252 41 1 0.1073 -9.0595 0.6831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224692666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:13 Heat of formation + Delta-G solvation = 37.754515 kcal Electronic energy + Delta-G solvation = -21878.328220 eV Core-core repulsion = 18537.316896 eV Total energy + Delta-G solvation = -3341.011324 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.53666 -39.09578 -37.73921 -36.84908 -34.78466 -32.51423 -30.39325 -29.07651 -28.65561 -27.95126 -24.46864 -23.53134 -21.91545 -21.32348 -20.95640 -20.38819 -20.16798 -17.88403 -17.30660 -16.93014 -16.65374 -16.07469 -15.95150 -15.53283 -15.00264 -14.22788 -13.99788 -13.69451 -13.24029 -13.06923 -12.91384 -12.89325 -12.44873 -12.19113 -11.97388 -11.73264 -11.62910 -11.37877 -11.16679 -10.96886 -10.83285 -10.72640 -10.67699 -10.49115 -10.10411 -9.90125 -9.77447 -9.68589 -9.30436 -8.50356 -8.29673 -6.33341 -4.02082 1.32113 1.66618 2.88944 3.13039 3.38617 3.45688 3.47828 3.66501 3.76413 3.95080 4.05681 4.16098 4.36984 4.44910 4.57473 4.58618 4.64718 4.84875 5.02130 5.09420 5.14736 5.25593 5.38501 5.40352 5.44197 5.45484 5.47078 5.64313 5.76292 5.91394 5.98195 5.99805 6.34211 6.64274 6.75828 6.79264 6.90739 7.09909 7.44138 7.57363 8.25318 8.49602 8.91952 9.70324 11.07544 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.035522 B = 0.002785 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.043906 B =10049.732534 C =10470.017229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.282 1.282 6 H -0.288 1.288 7 C -0.603 4.603 8 H 0.048 0.952 9 C 0.009 3.991 10 C -0.102 4.102 11 C -0.115 4.115 12 C 0.061 3.939 13 O -0.364 6.364 14 C 0.159 3.841 15 H 0.082 0.918 16 C -0.089 4.089 17 H 0.140 0.860 18 C -0.120 4.120 19 C -0.135 4.135 20 H 0.136 0.864 21 C 0.450 3.550 22 O -0.441 6.441 23 O -0.291 6.291 24 C -0.066 4.066 25 H 0.032 0.968 26 C -0.089 4.089 27 H 0.141 0.859 28 C -0.112 4.112 29 H 0.269 0.731 30 H 0.007 0.993 31 H 0.008 0.992 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.940 -25.932 -0.691 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.208 1.208 6 H -0.215 1.215 7 C -0.641 4.641 8 H 0.066 0.934 9 C -0.028 4.028 10 C -0.139 4.139 11 C -0.153 4.153 12 C -0.015 4.015 13 O -0.282 6.282 14 C 0.100 3.900 15 H 0.099 0.901 16 C -0.107 4.107 17 H 0.158 0.842 18 C -0.158 4.158 19 C -0.154 4.154 20 H 0.153 0.847 21 C 0.290 3.710 22 O -0.321 6.321 23 O -0.209 6.209 24 C -0.122 4.122 25 H 0.049 0.951 26 C -0.107 4.107 27 H 0.159 0.841 28 C -0.149 4.149 29 H 0.079 0.921 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.260 -24.522 -0.490 24.630 hybrid contribution 1.029 -1.755 0.154 2.040 sum 3.289 -26.277 -0.337 26.484 Atomic orbital electron populations 1.70781 1.06879 1.30604 1.46797 1.25858 0.96582 1.02745 0.93838 0.83551 0.74890 0.75373 0.76495 1.21483 1.20764 1.21451 1.22083 0.94286 0.92153 1.55597 0.93387 1.19212 0.94612 0.92974 0.96029 1.21452 0.98952 0.92900 1.00635 1.21643 0.98052 0.92791 1.02782 1.22822 0.95575 0.82934 1.00183 1.87928 1.33432 1.13039 1.93806 1.22979 0.93687 0.87952 0.85368 0.90059 1.25192 0.96340 0.88857 1.00321 0.84201 1.23237 1.00846 0.99972 0.91722 1.25730 0.90820 1.01928 0.96963 0.84671 1.26370 0.90279 0.82054 0.72254 1.90735 1.33522 1.62228 1.45602 1.88839 1.51754 1.23489 1.56867 1.25394 0.86949 1.08537 0.91357 0.95056 1.25244 0.93523 0.91029 1.00921 0.84093 1.23437 0.96520 1.03763 0.91176 0.92089 0.97447 0.97401 0.93152 0.93074 0.91646 0.91526 0.93015 0.93290 0.91074 0.88760 0.90005 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.65 55.43 0.76 -27.69 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.63 29.90 -169.99 -5.08 20.55 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.60 -17.53 9.11 -34.44 -0.31 -17.84 16 8 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 9 C 0.01 0.23 4.28 -27.88 -0.12 0.11 16 10 C -0.10 -2.09 5.15 -26.73 -0.14 -2.23 16 11 C -0.12 -1.94 5.58 -26.73 -0.15 -2.09 16 12 C 0.06 0.85 5.84 37.16 0.22 1.07 16 13 O -0.36 -4.53 9.34 -35.23 -0.33 -4.86 16 14 C 0.16 1.56 3.11 -25.15 -0.08 1.48 16 15 H 0.08 0.74 7.97 -51.72 -0.41 0.33 16 16 C -0.09 -0.55 5.58 -81.23 -0.45 -1.00 16 17 H 0.14 0.60 8.16 -51.79 -0.42 0.18 16 18 C -0.12 -0.68 5.32 -22.26 -0.12 -0.80 16 19 C -0.13 -0.95 4.85 -83.96 -0.41 -1.36 16 20 H 0.14 0.64 8.22 -51.39 -0.42 0.22 16 21 C 0.45 5.27 6.92 34.27 0.24 5.51 16 22 O -0.44 -6.45 18.01 -18.37 -0.33 -6.78 16 23 O -0.29 -3.95 12.01 -55.14 -0.66 -4.61 16 24 C -0.07 -0.71 5.91 -30.55 -0.18 -0.89 16 25 H 0.03 0.32 1.31 -144.44 -0.19 0.13 16 26 C -0.09 -0.69 6.05 -82.93 -0.50 -1.19 16 27 H 0.14 0.97 8.16 -51.79 -0.42 0.55 16 28 C -0.11 -0.70 6.19 -22.14 -0.14 -0.84 16 29 H 0.27 8.30 7.22 -40.82 -0.29 8.01 16 30 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 31 H 0.01 0.21 8.01 -51.93 -0.42 -0.21 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 38 H 0.07 0.46 7.39 -52.09 -0.38 0.07 16 39 H 0.09 0.32 8.17 -51.77 -0.42 -0.10 16 40 H 0.08 0.34 8.15 -51.86 -0.42 -0.08 16 41 H 0.10 0.77 7.50 -51.98 -0.39 0.38 16 LS Contribution 328.45 15.07 4.95 4.95 Total: -1.00 -34.31 328.45 -9.29 -43.60 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -6.35 Total: -5.38 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.24 Total: -19.78 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: 0.76 Total: -27.69 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -1.32 Total: -16.25 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.31 -9.29 -43.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224692666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.357 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds