Wall clock time and date at job start Tue Mar 31 2020 01:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 5 5 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46929 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.47189 * 179.97438 * 12 11 10 14 14 C 1.42989 * 113.99880 * 179.97438 * 13 12 11 15 15 H 1.09371 * 111.16528 * 325.73313 * 14 13 12 16 16 C 1.59977 * 112.41557 * 199.30074 * 14 13 12 17 17 H 1.09248 * 117.57827 * 63.94664 * 16 14 13 18 18 C 1.57530 * 105.59732 * 196.78175 * 16 14 13 19 19 C 1.56698 * 109.30446 * 67.16874 * 18 16 14 20 20 H 1.09952 * 115.34570 * 126.68321 * 19 18 16 21 21 C 1.54953 * 107.78560 * 257.29938 * 19 18 16 22 22 O 1.21076 * 125.26372 * 271.63565 * 21 19 18 23 23 O 1.39368 * 111.07239 * 91.69443 * 21 19 18 24 24 C 1.41511 * 93.66083 * 333.41104 * 23 21 19 25 25 H 1.10566 * 76.32279 * 324.23201 * 24 23 21 26 26 C 1.57490 * 104.82587 * 60.77502 * 24 23 21 27 27 H 1.09243 * 120.75447 * 56.79312 * 26 24 23 28 28 C 1.55995 * 101.78488 * 191.91385 * 26 24 23 29 29 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 31 31 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 32 32 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 33 33 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 34 34 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 35 35 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 36 36 H 1.09006 * 109.47297 * 60.00171 * 12 11 10 37 37 H 1.09004 * 109.47429 * 300.00346 * 12 11 10 38 38 H 1.08707 * 109.95621 * 305.74616 * 18 16 14 39 39 H 1.09290 * 108.93651 * 186.44489 * 18 16 14 40 40 H 1.09126 * 111.63148 * 151.16168 * 28 26 24 41 41 H 1.08909 * 111.93300 * 276.39573 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 6 2.4746 -6.1499 0.0005 13 8 1.7601 -7.3875 0.0017 14 6 2.6006 -8.5443 0.0007 15 1 3.5138 -8.3684 -0.5749 16 6 1.8293 -9.8584 -0.4868 17 1 1.4619 -9.8768 -1.5155 18 6 2.7212 -11.0704 -0.0208 19 6 2.7168 -11.1452 1.5443 20 1 2.4351 -12.1198 1.9682 21 6 4.0609 -10.5630 2.0498 22 8 5.0808 -11.1958 2.2093 23 8 3.9512 -9.1973 2.3047 24 6 2.9019 -9.0154 1.3728 25 1 3.5439 -9.7799 0.8976 26 6 1.7359 -9.9370 1.8940 27 1 1.3375 -9.8163 2.9039 28 6 0.7585 -9.9324 0.6782 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5566 0.8903 32 1 2.8720 -3.6043 -0.8894 33 1 2.8720 -3.6043 0.8906 34 1 0.8534 -5.0451 -0.8886 35 1 0.8540 -5.0446 0.8914 36 1 3.1019 -6.0922 0.8901 37 1 3.1007 -6.0922 -0.8899 38 1 3.7355 -10.9492 -0.3927 39 1 2.3030 -11.9950 -0.4265 40 1 0.1781 -10.8550 0.6252 41 1 0.1073 -9.0595 0.6831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224692666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:13 Heat of formation + Delta-G solvation = 16.587547 kcal Electronic energy + Delta-G solvation = -21879.246088 eV Core-core repulsion = 18537.316896 eV Total energy + Delta-G solvation = -3341.929192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.25653 -39.98297 -38.75325 -37.73959 -36.56460 -34.41003 -31.28264 -29.98478 -29.56683 -28.90147 -26.30771 -24.39700 -23.60866 -22.25036 -21.83769 -21.44337 -20.93499 -18.90321 -18.67209 -18.09413 -17.81962 -16.97291 -16.82346 -16.53351 -15.78566 -15.65148 -15.41169 -15.18647 -14.81430 -14.39216 -14.05666 -13.57235 -13.50474 -13.16464 -12.96028 -12.70961 -12.66375 -12.49954 -12.42384 -12.24724 -12.05245 -11.95595 -11.75686 -11.64311 -11.58071 -11.44810 -11.32189 -10.76728 -10.65808 -10.54469 -10.10171 -8.69638 -6.40057 0.44915 0.91256 1.52271 1.60985 1.80504 2.18050 2.35512 2.57182 2.80433 3.15274 3.16155 3.33081 3.42521 3.53545 3.79292 3.84287 3.96417 3.99746 4.06457 4.10603 4.26580 4.35393 4.43957 4.48625 4.53185 4.64030 4.76461 4.80327 4.88413 5.00805 5.03283 5.03848 5.06758 5.13957 5.18181 5.27601 5.44187 5.54132 5.92706 6.00262 6.05869 6.18760 6.57832 7.42289 8.71558 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.035522 B = 0.002785 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.043906 B =10049.732534 C =10470.017229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.041 4.041 3 Si 1.118 2.882 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.623 4.623 8 H 0.050 0.950 9 C 0.007 3.993 10 C -0.091 4.091 11 C -0.105 4.105 12 C 0.071 3.929 13 O -0.370 6.370 14 C 0.142 3.858 15 H 0.082 0.918 16 C -0.072 4.072 17 H 0.167 0.833 18 C -0.118 4.118 19 C -0.115 4.115 20 H 0.168 0.832 21 C 0.443 3.557 22 O -0.483 6.483 23 O -0.333 6.333 24 C -0.099 4.099 25 H 0.043 0.957 26 C -0.086 4.086 27 H 0.145 0.855 28 C -0.106 4.106 29 H 0.256 0.744 30 H -0.008 1.008 31 H -0.012 1.012 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.133 0.867 40 H 0.115 0.885 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.745 -27.723 -1.757 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.939 3.061 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.661 4.661 8 H 0.069 0.931 9 C -0.030 4.030 10 C -0.129 4.129 11 C -0.143 4.143 12 C -0.006 4.006 13 O -0.288 6.288 14 C 0.084 3.916 15 H 0.100 0.900 16 C -0.090 4.090 17 H 0.185 0.815 18 C -0.155 4.155 19 C -0.134 4.134 20 H 0.186 0.814 21 C 0.286 3.714 22 O -0.365 6.365 23 O -0.253 6.253 24 C -0.155 4.155 25 H 0.060 0.940 26 C -0.104 4.104 27 H 0.163 0.837 28 C -0.143 4.143 29 H 0.065 0.935 30 H 0.010 0.990 31 H 0.006 0.994 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.151 0.849 40 H 0.134 0.866 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.057 -26.342 -1.560 26.468 hybrid contribution 1.107 -1.208 0.518 1.719 sum 3.164 -27.551 -1.042 27.751 Atomic orbital electron populations 1.70915 1.07943 1.29906 1.48803 1.27491 0.96660 1.06972 0.92696 0.82930 0.74133 0.70995 0.78051 1.19252 1.20747 1.19506 1.22558 0.94761 0.93661 1.55141 0.93134 1.19181 0.95151 0.94387 0.94238 1.21263 0.97897 0.92966 1.00791 1.21421 0.98130 0.92179 1.02542 1.22516 0.94492 0.83075 1.00466 1.87889 1.33895 1.13110 1.93947 1.23559 0.94258 0.88532 0.85283 0.90010 1.25359 0.95630 0.86390 1.01592 0.81517 1.23299 1.00623 1.01362 0.90262 1.25858 0.86827 1.02660 0.98103 0.81429 1.27395 0.91578 0.81332 0.71086 1.90698 1.35542 1.62756 1.47552 1.88759 1.53282 1.25284 1.57978 1.25942 0.88157 1.09811 0.91571 0.93988 1.25377 0.93169 0.89902 1.01932 0.83714 1.23456 0.96058 1.04746 0.90030 0.93476 0.98979 0.99383 0.92527 0.93279 0.91399 0.92274 0.93895 0.91910 0.91967 0.84897 0.86640 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.41 13.65 21.45 0.29 -59.12 16 2 C -0.04 -2.44 5.46 84.65 0.46 -1.97 16 3 Si 1.12 51.04 29.90 68.60 2.05 53.09 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.62 -36.62 9.11 25.60 0.23 -36.38 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.01 0.40 4.28 29.85 0.13 0.52 16 10 C -0.09 -3.80 5.15 30.59 0.16 -3.64 16 11 C -0.11 -3.53 5.58 30.59 0.17 -3.36 16 12 C 0.07 1.94 5.84 71.98 0.42 2.36 16 13 O -0.37 -8.85 9.34 -148.98 -1.39 -10.24 16 14 C 0.14 2.59 3.11 31.62 0.10 2.69 16 15 H 0.08 1.42 7.97 -2.19 -0.02 1.40 16 16 C -0.07 -0.63 5.58 -4.71 -0.03 -0.66 16 17 H 0.17 0.64 8.16 -2.26 -0.02 0.62 16 18 C -0.12 -0.88 5.32 33.49 0.18 -0.70 16 19 C -0.12 -1.31 4.85 -6.48 -0.03 -1.34 16 20 H 0.17 0.87 8.22 -1.88 -0.02 0.85 16 21 C 0.44 10.33 6.92 70.11 0.49 10.81 16 22 O -0.48 -14.43 18.01 20.64 0.37 -14.06 16 23 O -0.33 -9.39 12.01 -110.92 -1.33 -10.72 16 24 C -0.10 -2.09 5.91 28.12 0.17 -1.93 16 25 H 0.04 0.82 1.31 -165.87 -0.22 0.60 16 26 C -0.09 -1.15 6.05 -5.81 -0.04 -1.18 16 27 H 0.15 1.78 8.16 -2.26 -0.02 1.76 16 28 C -0.11 -0.96 6.19 33.57 0.21 -0.75 16 29 H 0.26 16.35 7.22 -92.71 -0.67 15.68 16 30 H -0.01 -0.45 8.01 -2.38 -0.02 -0.47 16 31 H -0.01 -0.69 8.01 -2.39 -0.02 -0.71 16 32 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.06 1.54 8.12 -2.38 -0.02 1.52 16 38 H 0.06 0.63 7.39 -2.54 -0.02 0.61 16 39 H 0.13 0.10 8.17 -2.23 -0.02 0.09 16 40 H 0.12 0.34 8.15 -2.32 -0.02 0.32 16 41 H 0.08 1.08 7.50 -2.43 -0.02 1.07 16 Total: -1.00 -77.54 328.45 3.52 -74.02 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: 0.91 Total: 2.55 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 2.61 Total: -35.53 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.29 Total: -59.12 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -2.35 Total: -35.02 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.09 kcal Total: -77.54 3.52 -74.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224692666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.606 kcal (2) G-P(sol) polarization free energy of solvation -77.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds