Wall clock time and date at job start Tue Mar 31 2020 01:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00415 * 2 1 4 4 H 1.48501 * 109.47182 * 269.99552 * 3 2 1 5 5 H 1.48499 * 109.47367 * 29.99614 * 3 2 1 6 6 H 1.48501 * 109.47299 * 149.99777 * 3 2 1 7 7 C 1.37881 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99939 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00143 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47254 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47365 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47365 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.46988 * 180.02562 * 12 11 10 14 14 C 1.42900 * 114.00120 * 180.02562 * 13 12 11 15 15 H 1.09009 * 110.54279 * 328.82338 * 14 13 12 16 16 C 1.55839 * 110.42039 * 206.21543 * 14 13 12 17 17 H 1.09002 * 116.71854 * 47.00589 * 16 14 13 18 18 C 1.56170 * 104.12002 * 176.39704 * 16 14 13 19 19 C 1.54831 * 105.15400 * 69.66609 * 18 16 14 20 20 H 1.09000 * 114.52741 * 126.57853 * 19 18 16 21 21 C 1.52043 * 108.14284 * 254.75240 * 19 18 16 22 22 O 1.20820 * 125.88338 * 254.50190 * 21 19 18 23 23 O 1.33967 * 108.22731 * 74.51065 * 21 19 18 24 24 C 1.46456 * 111.25273 * 13.56294 * 23 21 19 25 25 H 1.09001 * 113.56170 * 137.61125 * 24 23 21 26 26 C 1.56384 * 104.66227 * 13.15204 * 24 23 21 27 27 H 1.09004 * 116.78453 * 94.32461 * 26 24 23 28 28 C 1.56002 * 102.94733 * 223.35409 * 26 24 23 29 29 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46968 * 59.99765 * 9 7 2 31 31 H 1.09008 * 109.46648 * 300.00149 * 9 7 2 32 32 H 1.09007 * 109.46733 * 60.00076 * 10 9 7 33 33 H 1.08996 * 109.46939 * 300.00160 * 10 9 7 34 34 H 1.09002 * 109.47035 * 59.99838 * 11 10 9 35 35 H 1.09003 * 109.47493 * 300.00609 * 11 10 9 36 36 H 1.08994 * 109.47036 * 60.00565 * 12 11 10 37 37 H 1.09002 * 109.46893 * 299.99863 * 12 11 10 38 38 H 1.09002 * 110.31662 * 310.74044 * 18 16 14 39 39 H 1.09002 * 110.36806 * 188.62892 * 18 16 14 40 40 H 1.09002 * 111.94077 * 166.35135 * 28 26 24 41 41 H 1.09001 * 111.93861 * 292.56670 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5513 -2.6369 0.0009 12 6 6.0612 -4.0794 0.0002 13 8 7.4902 -4.0794 0.0007 14 6 8.0715 -5.3849 -0.0005 15 1 7.4290 -6.0901 0.5269 16 6 9.4893 -5.3494 0.6452 17 1 9.5843 -4.8141 1.5900 18 6 9.9415 -6.8442 0.6539 19 6 10.1826 -7.2027 -0.8329 20 1 11.1648 -7.6263 -1.0427 21 6 9.0250 -8.0681 -1.3050 22 8 9.0652 -9.2599 -1.4996 23 8 7.9530 -7.2814 -1.4681 24 6 8.3270 -5.8654 -1.4564 25 1 7.8198 -5.2746 -2.2192 26 6 9.8844 -5.8661 -1.5973 27 1 10.2865 -5.7620 -2.6051 28 6 10.3302 -4.7948 -0.5547 29 1 -0.4850 0.8401 -0.0004 30 1 3.8744 -0.6802 0.8911 31 1 3.8751 -0.6805 -0.8889 32 1 3.6583 -3.1503 -0.8893 33 1 3.6576 -3.1507 0.8907 34 1 5.9147 -2.1231 0.8910 35 1 5.9148 -2.1229 -0.8890 36 1 5.6980 -4.5926 -0.8901 37 1 5.6979 -4.5936 0.8899 38 1 9.1570 -7.4745 1.0726 39 1 10.8629 -6.9585 1.2250 40 1 11.4012 -4.8399 -0.3568 41 1 10.0165 -3.7913 -0.8424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224692669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:16 Heat of formation + Delta-G solvation = -130.382961 kcal Electronic energy + Delta-G solvation = -21839.805021 eV Core-core repulsion = 18491.502710 eV Total energy + Delta-G solvation = -3348.302312 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.70414 -38.97766 -37.57816 -36.68058 -34.72635 -32.37852 -30.67265 -29.78862 -29.05366 -27.71097 -25.08900 -23.88404 -21.62950 -21.18777 -20.58744 -20.44150 -20.00086 -17.97321 -17.30519 -16.76604 -16.61368 -16.09231 -15.68139 -15.44540 -15.07334 -14.37220 -14.09577 -14.02639 -13.69238 -13.24396 -12.69416 -12.61136 -12.29211 -12.12287 -12.04469 -11.83689 -11.70411 -11.64548 -11.57587 -11.26902 -11.10055 -10.97185 -10.72530 -10.65057 -10.28459 -9.92611 -9.73689 -9.61886 -9.58998 -9.18024 -8.53772 -6.04225 -4.02310 1.72219 2.64802 3.21817 3.30822 3.38180 3.42120 3.53382 3.58581 3.79257 3.95652 4.33644 4.38079 4.45423 4.50467 4.54264 4.68747 4.85766 5.05247 5.09519 5.21769 5.24509 5.29714 5.30340 5.39404 5.43350 5.49149 5.59332 5.61093 5.66438 5.93338 5.94676 6.28375 6.38756 6.57885 6.67552 6.85594 7.08747 7.13956 7.29920 7.42973 7.79745 8.54130 9.00787 9.58354 11.09347 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.036183 B = 0.002880 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.650156 B = 9719.130727 C =10139.864212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.101 4.101 11 C -0.118 4.118 12 C 0.058 3.942 13 O -0.369 6.369 14 C 0.068 3.932 15 H 0.082 0.918 16 C -0.093 4.093 17 H 0.122 0.878 18 C -0.110 4.110 19 C -0.156 4.156 20 H 0.128 0.872 21 C 0.485 3.515 22 O -0.456 6.456 23 O -0.345 6.345 24 C 0.062 3.938 25 H 0.140 0.860 26 C -0.127 4.127 27 H 0.124 0.876 28 C -0.111 4.111 29 H 0.263 0.737 30 H 0.016 0.984 31 H 0.011 0.989 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.335 -11.659 -0.392 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.050 4.050 10 C -0.139 4.139 11 C -0.155 4.155 12 C -0.018 4.018 13 O -0.288 6.288 14 C 0.009 3.991 15 H 0.100 0.900 16 C -0.111 4.111 17 H 0.140 0.860 18 C -0.148 4.148 19 C -0.176 4.176 20 H 0.146 0.854 21 C 0.325 3.675 22 O -0.340 6.340 23 O -0.261 6.261 24 C 0.007 3.993 25 H 0.158 0.842 26 C -0.145 4.145 27 H 0.142 0.858 28 C -0.148 4.148 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 25.050 -12.012 -0.502 27.786 hybrid contribution 0.124 0.643 -0.120 0.666 sum 25.174 -11.369 -0.623 27.629 Atomic orbital electron populations 1.69919 1.06334 1.26883 1.51245 1.25050 0.94742 0.99240 0.94584 0.86757 0.80365 0.83542 0.78499 1.20308 1.21425 1.18956 1.21172 0.89602 0.94459 1.50728 0.91082 1.19560 0.97032 0.92149 0.96297 1.21407 0.90959 1.00229 1.01264 1.21670 0.97591 0.93553 1.02734 1.22827 0.79076 0.99512 1.00357 1.87931 1.21058 1.25280 1.94549 1.23916 0.95300 0.86713 0.93143 0.89983 1.23694 0.92763 0.95171 0.99479 0.86013 1.22623 1.03079 0.96026 0.93073 1.23951 1.00078 0.95909 0.97691 0.85412 1.23184 0.84105 0.87087 0.73103 1.90721 1.82782 1.13150 1.47323 1.87007 1.35722 1.19743 1.83627 1.25822 0.95677 0.77611 1.00198 0.84202 1.24558 0.94204 0.95091 1.00648 0.85831 1.23265 1.00114 0.98539 0.92927 0.92751 0.96578 0.97028 0.92675 0.92655 0.91597 0.91645 0.93149 0.93118 0.90652 0.89120 0.89815 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -1.93 5.15 -26.73 -0.14 -2.07 16 11 C -0.12 -1.81 5.58 -26.73 -0.15 -1.96 16 12 C 0.06 0.75 5.80 37.16 0.22 0.96 16 13 O -0.37 -4.28 9.97 -35.23 -0.35 -4.64 16 14 C 0.07 0.63 2.39 -23.92 -0.06 0.58 16 15 H 0.08 0.81 7.43 -51.92 -0.39 0.43 16 16 C -0.09 -0.63 4.95 -85.43 -0.42 -1.05 16 17 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 18 C -0.11 -0.68 5.77 -24.07 -0.14 -0.82 16 19 C -0.16 -1.08 4.33 -88.07 -0.38 -1.46 16 20 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 21 C 0.49 5.38 7.57 36.67 0.28 5.66 16 22 O -0.46 -6.61 18.00 -18.36 -0.33 -6.94 16 23 O -0.34 -3.95 10.34 -38.17 -0.39 -4.35 16 24 C 0.06 0.55 4.81 -23.62 -0.11 0.43 16 25 H 0.14 1.17 8.14 -51.93 -0.42 0.75 16 26 C -0.13 -0.80 5.08 -85.12 -0.43 -1.23 16 27 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 28 C -0.11 -0.64 6.41 -23.15 -0.15 -0.79 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 31 H 0.01 0.27 7.57 -51.92 -0.39 -0.13 16 32 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 38 H 0.07 0.54 7.43 -51.93 -0.39 0.15 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.61 8.06 -51.93 -0.42 0.19 16 LS Contribution 329.17 15.07 4.96 4.96 Total: -1.00 -33.12 329.17 -8.66 -41.78 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -6.61 Total: -4.93 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -2.03 Total: -15.65 kcal Atomic # 7 Polarization: -28.09 SS G_CDS: 0.77 Total: -27.32 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -1.08 Total: -15.92 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.12 -8.66 -41.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224692669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.605 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds