Wall clock time and date at job start Tue Mar 31 2020 01:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00415 * 2 1 4 4 H 1.48501 * 109.47182 * 269.99552 * 3 2 1 5 5 H 1.48499 * 109.47367 * 29.99614 * 3 2 1 6 6 H 1.48501 * 109.47299 * 149.99777 * 3 2 1 7 7 C 1.37881 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99939 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00143 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47254 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47365 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47365 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.46988 * 180.02562 * 12 11 10 14 14 C 1.42900 * 114.00120 * 180.02562 * 13 12 11 15 15 H 1.09009 * 110.54279 * 328.82338 * 14 13 12 16 16 C 1.55839 * 110.42039 * 206.21543 * 14 13 12 17 17 H 1.09002 * 116.71854 * 47.00589 * 16 14 13 18 18 C 1.56170 * 104.12002 * 176.39704 * 16 14 13 19 19 C 1.54831 * 105.15400 * 69.66609 * 18 16 14 20 20 H 1.09000 * 114.52741 * 126.57853 * 19 18 16 21 21 C 1.52043 * 108.14284 * 254.75240 * 19 18 16 22 22 O 1.20820 * 125.88338 * 254.50190 * 21 19 18 23 23 O 1.33967 * 108.22731 * 74.51065 * 21 19 18 24 24 C 1.46456 * 111.25273 * 13.56294 * 23 21 19 25 25 H 1.09001 * 113.56170 * 137.61125 * 24 23 21 26 26 C 1.56384 * 104.66227 * 13.15204 * 24 23 21 27 27 H 1.09004 * 116.78453 * 94.32461 * 26 24 23 28 28 C 1.56002 * 102.94733 * 223.35409 * 26 24 23 29 29 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46968 * 59.99765 * 9 7 2 31 31 H 1.09008 * 109.46648 * 300.00149 * 9 7 2 32 32 H 1.09007 * 109.46733 * 60.00076 * 10 9 7 33 33 H 1.08996 * 109.46939 * 300.00160 * 10 9 7 34 34 H 1.09002 * 109.47035 * 59.99838 * 11 10 9 35 35 H 1.09003 * 109.47493 * 300.00609 * 11 10 9 36 36 H 1.08994 * 109.47036 * 60.00565 * 12 11 10 37 37 H 1.09002 * 109.46893 * 299.99863 * 12 11 10 38 38 H 1.09002 * 110.31662 * 310.74044 * 18 16 14 39 39 H 1.09002 * 110.36806 * 188.62892 * 18 16 14 40 40 H 1.09002 * 111.94077 * 166.35135 * 28 26 24 41 41 H 1.09001 * 111.93861 * 292.56670 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5513 -2.6369 0.0009 12 6 6.0612 -4.0794 0.0002 13 8 7.4902 -4.0794 0.0007 14 6 8.0715 -5.3849 -0.0005 15 1 7.4290 -6.0901 0.5269 16 6 9.4893 -5.3494 0.6452 17 1 9.5843 -4.8141 1.5900 18 6 9.9415 -6.8442 0.6539 19 6 10.1826 -7.2027 -0.8329 20 1 11.1648 -7.6263 -1.0427 21 6 9.0250 -8.0681 -1.3050 22 8 9.0652 -9.2599 -1.4996 23 8 7.9530 -7.2814 -1.4681 24 6 8.3270 -5.8654 -1.4564 25 1 7.8198 -5.2746 -2.2192 26 6 9.8844 -5.8661 -1.5973 27 1 10.2865 -5.7620 -2.6051 28 6 10.3302 -4.7948 -0.5547 29 1 -0.4850 0.8401 -0.0004 30 1 3.8744 -0.6802 0.8911 31 1 3.8751 -0.6805 -0.8889 32 1 3.6583 -3.1503 -0.8893 33 1 3.6576 -3.1507 0.8907 34 1 5.9147 -2.1231 0.8910 35 1 5.9148 -2.1229 -0.8890 36 1 5.6980 -4.5926 -0.8901 37 1 5.6979 -4.5936 0.8899 38 1 9.1570 -7.4745 1.0726 39 1 10.8629 -6.9585 1.2250 40 1 11.4012 -4.8399 -0.3568 41 1 10.0165 -3.7913 -0.8424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224692669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:15 Heat of formation + Delta-G solvation = -150.204754 kcal Electronic energy + Delta-G solvation = -21840.664559 eV Core-core repulsion = 18491.502710 eV Total energy + Delta-G solvation = -3349.161849 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.37794 -39.84412 -38.53630 -37.46748 -36.32223 -34.35731 -31.62961 -30.59713 -30.18751 -28.35235 -26.65554 -24.75034 -23.08833 -21.95348 -21.66531 -21.21509 -20.95115 -18.88735 -18.66389 -18.04876 -17.54150 -16.92759 -16.73239 -16.35718 -16.19053 -15.79338 -15.30362 -15.01986 -14.72924 -14.34935 -14.19780 -13.81439 -13.52511 -13.15872 -13.08920 -12.75608 -12.66270 -12.54884 -12.32113 -12.17361 -12.14072 -11.91511 -11.87723 -11.75565 -11.58115 -11.40815 -11.33754 -11.24066 -11.06581 -10.76095 -10.48985 -8.29334 -6.33946 0.89752 1.37194 1.39309 1.51783 1.89304 2.37359 2.49162 2.82381 2.99824 3.06217 3.20441 3.39101 3.73825 3.76849 3.96293 3.99302 4.07280 4.14740 4.21065 4.29685 4.39664 4.49455 4.55100 4.56095 4.64203 4.75909 4.86657 4.91043 4.94794 5.09721 5.11013 5.13779 5.15609 5.19836 5.22625 5.54523 5.62465 5.63021 5.67986 6.15650 6.28919 6.30319 6.74717 7.31052 8.87756 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.036183 B = 0.002880 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.650156 B = 9719.130727 C =10139.864212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.537 4.537 8 H 0.029 0.971 9 C -0.012 4.012 10 C -0.096 4.096 11 C -0.107 4.107 12 C 0.065 3.935 13 O -0.372 6.372 14 C 0.060 3.940 15 H 0.069 0.931 16 C -0.089 4.089 17 H 0.132 0.868 18 C -0.108 4.108 19 C -0.143 4.143 20 H 0.152 0.848 21 C 0.478 3.522 22 O -0.502 6.502 23 O -0.370 6.370 24 C 0.053 3.947 25 H 0.141 0.859 26 C -0.116 4.116 27 H 0.144 0.856 28 C -0.102 4.102 29 H 0.266 0.734 30 H 0.022 0.978 31 H 0.020 0.980 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.079 -10.290 -0.192 30.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.575 4.575 8 H 0.047 0.953 9 C -0.049 4.049 10 C -0.133 4.133 11 C -0.144 4.144 12 C -0.011 4.011 13 O -0.291 6.291 14 C 0.001 3.999 15 H 0.087 0.913 16 C -0.107 4.107 17 H 0.150 0.850 18 C -0.145 4.145 19 C -0.163 4.163 20 H 0.170 0.830 21 C 0.321 3.679 22 O -0.389 6.389 23 O -0.287 6.287 24 C -0.002 4.002 25 H 0.158 0.842 26 C -0.134 4.134 27 H 0.162 0.838 28 C -0.139 4.139 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 28.811 -10.643 -0.300 30.716 hybrid contribution -1.165 0.126 -0.185 1.186 sum 27.646 -10.518 -0.485 29.583 Atomic orbital electron populations 1.70083 1.08460 1.28220 1.52777 1.26107 0.95671 1.03846 0.94061 0.85583 0.79536 0.77789 0.79289 1.19056 1.21061 1.16639 1.21573 0.92470 0.93036 1.50376 0.95290 1.19531 0.93534 0.95151 0.96702 1.21263 0.93952 0.97324 1.00798 1.21453 0.94418 0.95334 1.03208 1.22589 0.80225 0.97795 1.00531 1.87894 1.19846 1.26694 1.94681 1.24129 0.96605 0.85337 0.93795 0.91324 1.23761 0.90796 0.95834 1.00282 0.85017 1.22661 1.03948 0.95192 0.92696 1.24035 0.99156 0.94973 0.98090 0.82996 1.23948 0.85182 0.86820 0.71927 1.90683 1.83696 1.15213 1.49323 1.86964 1.37096 1.21174 1.83445 1.26018 0.98016 0.76188 0.99965 0.84175 1.24666 0.91812 0.94899 1.02014 0.83815 1.23270 1.01396 0.97676 0.91563 0.92504 0.96002 0.96125 0.93246 0.93237 0.91168 0.91049 0.93120 0.93004 0.92206 0.86216 0.87128 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 2 C 0.00 -0.03 5.47 84.66 0.46 0.43 16 3 Si 0.96 44.28 27.47 68.60 1.88 46.16 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 7 C -0.54 -31.41 9.66 25.60 0.25 -31.16 16 8 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 9 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 10 C -0.10 -3.62 5.15 30.59 0.16 -3.46 16 11 C -0.11 -3.09 5.58 30.59 0.17 -2.92 16 12 C 0.06 1.60 5.80 71.98 0.42 2.01 16 13 O -0.37 -7.97 9.97 -148.98 -1.48 -9.45 16 14 C 0.06 1.03 2.39 32.41 0.08 1.11 16 15 H 0.07 1.35 7.43 -2.38 -0.02 1.34 16 16 C -0.09 -0.94 4.95 -7.43 -0.04 -0.97 16 17 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 18 C -0.11 -1.02 5.77 32.32 0.19 -0.84 16 19 C -0.14 -1.61 4.33 -9.14 -0.04 -1.65 16 20 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 21 C 0.48 10.46 7.57 71.67 0.54 11.01 16 22 O -0.50 -14.90 18.00 21.61 0.39 -14.51 16 23 O -0.37 -8.55 10.34 -49.29 -0.51 -9.06 16 24 C 0.05 0.86 4.81 32.61 0.16 1.02 16 25 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 26 C -0.12 -1.11 5.08 -7.23 -0.04 -1.15 16 27 H 0.14 0.85 8.14 -2.38 -0.02 0.83 16 28 C -0.10 -0.77 6.41 32.92 0.21 -0.56 16 29 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 30 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 31 H 0.02 0.92 7.57 -2.38 -0.02 0.90 16 32 H 0.05 1.89 8.14 -2.38 -0.02 1.88 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 37 H 0.05 1.26 8.11 -2.39 -0.02 1.24 16 38 H 0.06 0.78 7.43 -2.39 -0.02 0.77 16 39 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.09 0.82 8.06 -2.39 -0.02 0.80 16 Total: -1.00 -74.30 329.17 4.16 -70.14 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 0.95 Total: 4.76 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 2.64 Total: -27.57 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.30 Total: -60.47 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -1.61 Total: -33.02 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Total: -74.30 4.16 -70.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224692669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.069 kcal (2) G-P(sol) polarization free energy of solvation -74.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds