Wall clock time and date at job start Tue Mar 31 2020 01:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00036 * 2 1 4 4 C 1.53006 * 109.47339 * 199.86388 * 3 2 1 5 5 C 1.53002 * 109.47030 * 64.99834 * 4 3 2 6 6 H 1.08999 * 109.47242 * 55.00291 * 5 4 3 7 7 C 1.52999 * 109.47163 * 175.00535 * 5 4 3 8 8 O 1.42904 * 109.46966 * 295.00489 * 5 4 3 9 9 C 1.35673 * 116.99764 * 154.54475 * 8 5 4 10 10 C 1.39315 * 119.81749 * 183.94662 * 9 8 5 11 11 C 1.36442 * 120.18466 * 180.25615 * 10 9 8 12 12 C 1.40828 * 119.80876 * 359.47752 * 11 10 9 13 13 C 1.41213 * 120.17572 * 180.29835 * 12 11 10 14 14 H 1.07997 * 120.00228 * 329.06252 * 13 12 11 15 15 C 1.39897 * 119.99967 * 149.06515 * 13 12 11 16 16 N 1.30877 * 120.00123 * 351.39032 * 15 13 12 17 17 Si 1.86800 * 119.99783 * 171.38593 * 15 13 12 18 18 H 1.48498 * 109.46992 * 60.00427 * 17 15 13 19 19 H 1.48500 * 109.46881 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47329 * 299.99970 * 17 15 13 21 21 C 1.40829 * 119.64512 * 0.27569 * 12 11 10 22 22 C 1.36435 * 119.81271 * 359.97438 * 21 12 11 23 23 O 1.42902 * 109.47474 * 79.86253 * 3 2 1 24 24 C 1.42893 * 113.99964 * 286.85755 * 23 3 2 25 25 H 1.08997 * 109.47206 * 64.61491 * 1 2 3 26 26 H 1.08999 * 109.47453 * 184.61808 * 1 2 3 27 27 H 1.09001 * 109.46923 * 304.61632 * 1 2 3 28 28 H 1.09004 * 109.47402 * 319.86141 * 3 2 1 29 29 H 1.09006 * 109.46587 * 305.00418 * 4 3 2 30 30 H 1.08992 * 109.47227 * 185.00195 * 4 3 2 31 31 H 1.08996 * 109.47382 * 180.02562 * 7 5 4 32 32 H 1.09010 * 109.46648 * 300.00264 * 7 5 4 33 33 H 1.08999 * 109.47241 * 59.99754 * 7 5 4 34 34 H 1.07998 * 119.90721 * 0.03133 * 10 9 8 35 35 H 1.08000 * 120.09036 * 179.74859 * 11 10 9 36 36 H 0.96998 * 120.00438 * 180.02562 * 16 15 13 37 37 H 1.08008 * 120.09506 * 180.02562 * 21 12 11 38 38 H 1.08005 * 119.90984 * 179.97438 * 22 21 12 39 39 H 1.09002 * 109.47304 * 200.22615 * 24 23 3 40 40 H 1.09001 * 109.47241 * 320.22428 * 24 23 3 41 41 H 1.09002 * 109.47584 * 80.22149 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4571 1.2195 -0.4902 5 6 3.4744 0.7687 -1.9522 6 1 2.8533 1.4390 -2.5464 7 6 4.9103 0.8025 -2.4793 8 8 2.9636 -0.5626 -2.0462 9 6 2.4146 -0.9293 -3.2314 10 6 1.8248 -2.1847 -3.3627 11 6 1.2751 -2.5632 -4.5527 12 6 1.2952 -1.6767 -5.6467 13 6 0.7229 -2.0581 -6.8801 14 1 0.7242 -3.0962 -7.1779 15 6 0.1542 -1.0912 -7.7161 16 7 -0.0002 0.1356 -7.2872 17 14 -0.3845 -1.5513 -9.4445 18 1 -1.4167 -2.6166 -9.3741 19 1 -0.9519 -0.3570 -10.1205 20 1 0.7861 -2.0461 -10.2127 21 6 1.8888 -0.4076 -5.5040 22 6 2.4386 -0.0464 -4.3088 23 8 1.9874 1.8371 1.3262 24 6 0.6891 2.2365 1.7700 25 1 -0.3633 0.4405 -0.9284 26 1 -0.3634 -1.0243 0.0827 27 1 -0.3633 0.5838 0.8458 28 1 1.4403 1.9569 -0.6625 29 1 4.0047 0.4998 0.1184 30 1 3.9278 2.1990 -0.4063 31 1 4.9226 0.4818 -3.5210 32 1 5.2998 1.8181 -2.4075 33 1 5.5314 0.1323 -1.8851 34 1 1.8059 -2.8614 -2.5213 35 1 0.8219 -3.5383 -4.6540 36 1 -0.3948 0.8059 -7.8667 37 1 1.9079 0.2782 -6.3382 38 1 2.8946 0.9263 -4.1977 39 1 0.7881 2.9368 2.5994 40 1 0.1569 2.7180 0.9496 41 1 0.1319 1.3595 2.0994 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225264629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:12 Heat of formation + Delta-G solvation = -127.210606 kcal Electronic energy + Delta-G solvation = -22469.379936 eV Core-core repulsion = 19121.215188 eV Total energy + Delta-G solvation = -3348.164748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88252 -40.03162 -38.27998 -36.86153 -35.35515 -34.14169 -31.56460 -30.84941 -30.39121 -27.78919 -26.88694 -26.70902 -24.14459 -23.44884 -22.67958 -21.25877 -19.25211 -18.88967 -18.24673 -18.07771 -17.21784 -16.83809 -16.08579 -15.73177 -15.65835 -15.32505 -15.09627 -14.87991 -14.44147 -14.36299 -14.22490 -13.74860 -13.63157 -13.45802 -13.25544 -13.14891 -12.82406 -12.76618 -12.63769 -12.36436 -12.28337 -12.07550 -11.87742 -11.59221 -11.40439 -11.06112 -10.96497 -10.85364 -10.67543 -9.51491 -8.73434 -8.50569 -6.21727 0.98813 1.09598 1.40009 1.51005 1.54149 2.25660 2.49598 2.72519 2.82031 2.87185 3.69216 3.72322 3.90902 4.03412 4.14059 4.16579 4.30956 4.37459 4.41735 4.46751 4.48106 4.50310 4.65417 4.73015 4.76202 4.84991 4.89033 4.98468 5.00414 5.14269 5.20186 5.30098 5.43183 5.59125 5.72440 6.01694 6.02902 6.11553 6.17271 6.29901 6.62744 6.88452 7.01136 7.18231 8.46470 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.024309 B = 0.004147 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.565102 B = 6750.606026 C = 7065.624116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.394 6.394 3 C 0.240 3.760 4 C -0.093 4.093 5 C 0.082 3.918 6 H 0.060 0.940 7 C -0.170 4.170 8 O -0.310 6.310 9 C 0.028 3.972 10 C -0.130 4.130 11 C -0.195 4.195 12 C 0.049 3.951 13 C -0.505 4.505 14 H 0.072 0.928 15 C 0.031 3.969 16 N -0.847 5.847 17 Si 0.982 3.018 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.262 1.262 21 C -0.140 4.140 22 C -0.185 4.185 23 O -0.410 6.410 24 C 0.015 3.985 25 H 0.031 0.969 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.283 0.717 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.051 0.949 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 6.732 11.920 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.314 6.314 3 C 0.145 3.855 4 C -0.130 4.130 5 C 0.025 3.975 6 H 0.078 0.922 7 C -0.227 4.227 8 O -0.225 6.225 9 C -0.016 4.016 10 C -0.149 4.149 11 C -0.214 4.214 12 C 0.047 3.953 13 C -0.536 4.536 14 H 0.090 0.910 15 C -0.180 4.180 16 N -0.475 5.475 17 Si 0.803 3.197 18 H -0.187 1.187 19 H -0.194 1.194 20 H -0.186 1.186 21 C -0.160 4.160 22 C -0.204 4.204 23 O -0.331 6.331 24 C -0.081 4.081 25 H 0.050 0.950 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.148 0.852 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.137 0.863 39 H 0.123 0.877 40 H 0.070 0.930 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.811 6.696 12.134 14.141 hybrid contribution -0.995 0.105 -1.155 1.529 sum 1.816 6.801 10.979 13.042 Atomic orbital electron populations 1.23212 0.80879 1.03895 1.00471 1.88166 1.20292 1.29299 1.93634 1.23492 0.95952 0.82616 0.83426 1.21616 0.93231 1.04483 0.93629 1.22307 0.95587 0.83347 0.96255 0.92197 1.22279 0.95139 1.04046 1.01248 1.86032 1.74074 1.31119 1.31298 1.18695 1.02352 0.95051 0.85499 1.19847 1.02328 0.95089 0.97645 1.20845 1.06876 1.00870 0.92822 1.17900 0.91563 0.92554 0.93271 1.19643 1.35640 0.95282 1.03017 0.91031 1.26632 0.93734 0.94172 1.03465 1.69851 1.35670 1.03922 1.38066 0.85260 0.79155 0.78654 0.76620 1.18699 1.19432 1.18616 1.20938 0.99865 0.98376 0.96828 1.20845 1.06048 0.99410 0.94076 1.87964 1.31059 1.80795 1.33253 1.23227 0.84126 1.00028 1.00707 0.95039 0.89426 0.91114 0.92817 0.89734 0.85234 0.93313 0.88614 0.91308 0.86897 0.87598 0.90667 0.87733 0.86350 0.87731 0.93010 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 10.66 113.37 1.21 1.52 16 2 O -0.39 -12.95 9.04 -119.39 -1.08 -14.03 16 3 C 0.24 6.64 2.86 71.98 0.21 6.84 16 4 C -0.09 -2.33 5.08 30.60 0.16 -2.18 16 5 C 0.08 2.48 2.22 30.59 0.07 2.55 16 6 H 0.06 1.90 6.16 -2.39 -0.01 1.88 16 7 C -0.17 -4.39 9.20 71.98 0.66 -3.73 16 8 O -0.31 -12.22 8.24 -71.15 -0.59 -12.81 16 9 C 0.03 1.29 6.63 22.79 0.15 1.44 16 10 C -0.13 -6.12 9.92 22.11 0.22 -5.90 16 11 C -0.19 -9.85 9.74 22.48 0.22 -9.63 16 12 C 0.05 2.70 5.53 -21.28 -0.12 2.59 16 13 C -0.50 -27.91 9.04 23.40 0.21 -27.70 16 14 H 0.07 3.81 7.86 -2.91 -0.02 3.79 16 15 C 0.03 1.62 5.28 85.24 0.45 2.07 16 16 N -0.85 -45.30 10.87 21.82 0.24 -45.07 16 17 Si 0.98 39.36 29.57 68.60 2.03 41.39 16 18 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 19 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 20 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 21 C -0.14 -7.48 8.59 22.48 0.19 -7.29 16 22 C -0.19 -8.62 8.22 22.11 0.18 -8.44 16 23 O -0.41 -10.37 10.61 -126.21 -1.34 -11.71 16 24 C 0.01 0.26 9.62 113.37 1.09 1.36 16 25 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.07 1.51 4.35 -2.39 -0.01 1.50 16 28 H 0.05 1.44 7.62 -2.38 -0.02 1.43 16 29 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.05 1.46 7.08 -2.39 -0.02 1.44 16 32 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 35 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 36 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 37 H 0.10 5.82 6.30 -2.91 -0.02 5.80 16 38 H 0.12 4.84 5.47 -2.91 -0.02 4.82 16 39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.05 0.86 7.73 -2.39 -0.02 0.84 16 41 H 0.05 0.94 6.08 -2.39 -0.01 0.93 16 Total: -1.00 -64.54 332.32 5.18 -59.37 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 1.02 Total: 29.35 kcal Atomic # 6 Polarization: -51.40 SS G_CDS: 4.90 Total: -46.50 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.24 Total: -45.07 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -3.00 Total: -38.54 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -64.54 5.18 -59.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.845 kcal (2) G-P(sol) polarization free energy of solvation -64.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds