Wall clock time and date at job start Tue Mar 31 2020 01:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99861 * 2 1 4 4 C 1.52997 * 109.47223 * 199.88726 * 3 2 1 5 5 C 1.53004 * 109.46911 * 65.00230 * 4 3 2 6 6 H 1.08996 * 109.47034 * 304.99296 * 5 4 3 7 7 C 1.53008 * 109.47004 * 185.00055 * 5 4 3 8 8 O 1.42895 * 109.47346 * 65.00169 * 5 4 3 9 9 C 1.35682 * 116.99909 * 208.63740 * 8 5 4 10 10 C 1.39314 * 119.81474 * 353.75510 * 9 8 5 11 11 C 1.36437 * 120.18448 * 180.02562 * 10 9 8 12 12 C 1.40838 * 119.81159 * 0.02562 * 11 10 9 13 13 C 1.41210 * 120.18044 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99959 * 333.94887 * 13 12 11 15 15 C 1.39889 * 119.99989 * 153.95035 * 13 12 11 16 16 N 1.30881 * 120.00146 * 344.64677 * 15 13 12 17 17 Si 1.86805 * 119.99944 * 164.63868 * 15 13 12 18 18 H 1.48505 * 109.46577 * 90.00346 * 17 15 13 19 19 H 1.48493 * 109.47097 * 210.00136 * 17 15 13 20 20 H 1.48494 * 109.46994 * 330.00664 * 17 15 13 21 21 C 1.40842 * 119.63956 * 0.25305 * 12 11 10 22 22 C 1.36435 * 119.80890 * 359.46039 * 21 12 11 23 23 O 1.42900 * 109.47482 * 79.88735 * 3 2 1 24 24 C 1.42904 * 114.00013 * 286.69409 * 23 3 2 25 25 H 1.08998 * 109.46862 * 59.93082 * 1 2 3 26 26 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47501 * 299.92671 * 1 2 3 28 28 H 1.09001 * 109.46986 * 319.88890 * 3 2 1 29 29 H 1.08995 * 109.47679 * 304.99764 * 4 3 2 30 30 H 1.09007 * 109.47505 * 184.99768 * 4 3 2 31 31 H 1.09000 * 109.46978 * 180.02562 * 7 5 4 32 32 H 1.08996 * 109.46606 * 299.99504 * 7 5 4 33 33 H 1.08996 * 109.47269 * 59.99426 * 7 5 4 34 34 H 1.07999 * 119.90927 * 0.02693 * 10 9 8 35 35 H 1.07999 * 120.09349 * 179.97438 * 11 10 9 36 36 H 0.97003 * 120.00086 * 180.02562 * 16 15 13 37 37 H 1.07990 * 120.09149 * 179.72693 * 21 12 11 38 38 H 1.08005 * 119.90607 * 180.27488 * 22 21 12 39 39 H 1.08997 * 109.47334 * 78.82904 * 24 23 3 40 40 H 1.09003 * 109.46912 * 198.83122 * 24 23 3 41 41 H 1.09008 * 109.46790 * 318.82561 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4568 1.2197 -0.4907 5 6 3.4735 0.7693 -1.9528 6 1 2.9252 -0.1677 -2.0506 7 6 4.9202 0.5632 -2.4065 8 8 2.8570 1.7692 -2.7664 9 6 2.2515 1.3492 -3.9056 10 6 2.3635 0.0175 -4.2992 11 6 1.7581 -0.4129 -5.4436 12 6 1.0187 0.4935 -6.2281 13 6 0.3894 0.0566 -7.4142 14 1 0.7800 -0.7957 -7.9504 15 6 -0.7401 0.7276 -7.8949 16 7 -1.3919 1.5528 -7.1157 17 14 -1.3178 0.4461 -9.6489 18 1 -2.2828 -0.6823 -9.6770 19 1 -1.9787 1.6755 -10.1556 20 1 -0.1511 0.1212 -10.5081 21 6 0.9153 1.8393 -5.8261 22 6 1.5219 2.2521 -4.6758 23 8 1.9879 1.8369 1.3263 24 6 0.6903 2.2397 1.7693 25 1 -0.3633 0.5149 -0.8894 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5127 0.8906 28 1 1.4399 1.9571 -0.6621 29 1 4.0048 0.5001 0.1175 30 1 3.9276 2.1993 -0.4070 31 1 4.9321 0.2427 -3.4482 32 1 5.4685 1.5001 -2.3087 33 1 5.3905 -0.1995 -1.7859 34 1 2.9312 -0.6761 -3.6967 35 1 1.8463 -1.4455 -5.7476 36 1 -2.1753 2.0179 -7.4488 37 1 0.3539 2.5415 -6.4243 38 1 1.4399 3.2829 -4.3638 39 1 0.1218 1.3614 2.0750 40 1 0.7901 2.9203 2.6149 41 1 0.1693 2.7449 0.9559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225264630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:15 Heat of formation + Delta-G solvation = -115.486573 kcal Electronic energy + Delta-G solvation = -22310.451247 eV Core-core repulsion = 18962.794891 eV Total energy + Delta-G solvation = -3347.656356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.57570 -38.69759 -36.61565 -35.87055 -33.64674 -32.71947 -29.89355 -29.20525 -28.98022 -26.78796 -25.95005 -24.89778 -22.97196 -21.95468 -20.72980 -19.86601 -17.57487 -17.35919 -17.18037 -16.81125 -15.96284 -15.19181 -14.65799 -14.50484 -14.34981 -13.96776 -13.77891 -13.52785 -13.42969 -12.82902 -12.64339 -12.51905 -12.23520 -12.12908 -11.87405 -11.59972 -11.39443 -11.35825 -11.17584 -11.00355 -10.94142 -10.65080 -10.37047 -9.97188 -9.88132 -9.76420 -9.72318 -9.28895 -9.03872 -7.62998 -6.98617 -6.70196 -4.25524 2.78670 2.96340 3.08413 3.12428 3.21355 3.52171 3.80648 3.95887 4.16485 4.64265 4.86400 5.02678 5.06744 5.18912 5.20616 5.33973 5.43059 5.48424 5.56804 5.64598 5.69272 5.74534 5.81562 5.91621 5.95562 6.12080 6.17373 6.28579 6.42151 6.75686 6.99573 6.99923 7.11548 7.14013 7.21066 7.48595 7.57121 7.81810 8.01560 8.21736 8.47449 8.66978 8.91355 8.99974 10.24504 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023330 B = 0.004126 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.866346 B = 6785.353267 C = 7368.303944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.392 6.392 3 C 0.243 3.757 4 C -0.095 4.095 5 C 0.088 3.912 6 H 0.079 0.921 7 C -0.172 4.172 8 O -0.325 6.325 9 C -0.003 4.003 10 C -0.167 4.167 11 C -0.195 4.195 12 C 0.087 3.913 13 C -0.464 4.464 14 H 0.075 0.925 15 C 0.075 3.925 16 N -0.804 5.804 17 Si 0.907 3.093 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.132 4.132 22 C -0.124 4.124 23 O -0.398 6.398 24 C 0.022 3.978 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.279 0.721 37 H 0.125 0.875 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.082 0.918 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.470 0.466 11.582 12.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.312 6.312 3 C 0.148 3.852 4 C -0.133 4.133 5 C 0.030 3.970 6 H 0.097 0.903 7 C -0.230 4.230 8 O -0.242 6.242 9 C -0.046 4.046 10 C -0.185 4.185 11 C -0.215 4.215 12 C 0.085 3.915 13 C -0.495 4.495 14 H 0.093 0.907 15 C -0.141 4.141 16 N -0.431 5.431 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.151 4.151 22 C -0.143 4.143 23 O -0.318 6.318 24 C -0.074 4.074 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.143 0.857 38 H 0.113 0.887 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.547 0.658 11.747 12.289 hybrid contribution -0.925 -0.177 -0.869 1.282 sum 2.622 0.481 10.878 11.200 Atomic orbital electron populations 1.23151 0.81015 1.03412 1.00660 1.87981 1.20004 1.29491 1.93742 1.23476 0.96047 0.82675 0.83027 1.21550 0.93071 1.04093 0.94554 1.22052 0.93782 0.92803 0.88336 0.90315 1.22273 0.96142 1.02052 1.02490 1.85862 1.70003 1.34947 1.33341 1.18578 1.02983 0.93686 0.89374 1.20454 1.04644 0.94175 0.99256 1.20606 1.06342 0.98089 0.96472 1.17591 0.90694 0.90944 0.92246 1.19450 1.09741 1.13168 1.07092 0.90652 1.25850 0.95790 0.93635 0.98872 1.69819 1.15036 1.22462 1.35763 0.86340 0.79378 0.78559 0.82587 1.19626 1.20181 1.18572 1.20970 1.01284 0.96413 0.96428 1.19841 1.00547 0.97251 0.96655 1.87977 1.29420 1.80685 1.33748 1.23031 0.85228 0.99246 0.99894 0.93204 0.89490 0.93330 0.91404 0.89099 0.89064 0.91453 0.91986 0.91871 0.88448 0.88791 0.91046 0.85741 0.88679 0.93182 0.89954 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 10.57 101.05 1.07 1.25 16 2 O -0.39 -6.18 10.04 -59.04 -0.59 -6.78 16 3 C 0.24 3.67 2.81 37.16 0.10 3.77 16 4 C -0.10 -1.35 5.00 -26.73 -0.13 -1.48 16 5 C 0.09 1.42 2.15 -26.72 -0.06 1.36 16 6 H 0.08 1.38 5.64 -51.93 -0.29 1.09 16 7 C -0.17 -2.42 9.26 37.16 0.34 -2.07 16 8 O -0.33 -6.47 9.23 -18.75 -0.17 -6.65 16 9 C 0.00 -0.07 6.66 -38.78 -0.26 -0.33 16 10 C -0.17 -3.75 8.34 -39.83 -0.33 -4.08 16 11 C -0.20 -4.80 9.74 -39.25 -0.38 -5.18 16 12 C 0.09 2.33 5.56 -106.80 -0.59 1.73 16 13 C -0.46 -12.33 9.04 -37.84 -0.34 -12.67 16 14 H 0.08 1.93 7.89 -52.49 -0.41 1.51 16 15 C 0.07 1.87 5.18 -17.34 -0.09 1.78 16 16 N -0.80 -20.79 10.93 55.54 0.61 -20.18 16 17 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 21 C -0.13 -3.41 8.63 -39.25 -0.34 -3.75 16 22 C -0.12 -2.97 9.92 -39.83 -0.40 -3.36 16 23 O -0.40 -5.66 10.61 -59.04 -0.63 -6.29 16 24 C 0.02 0.24 9.77 101.05 0.99 1.23 16 25 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.54 4.51 -51.93 -0.23 0.30 16 28 H 0.07 1.11 7.15 -51.93 -0.37 0.74 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.04 7.26 -51.93 -0.38 0.66 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 1.95 5.52 -52.49 -0.29 1.66 16 35 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 36 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 37 H 0.12 3.32 6.20 -52.49 -0.33 2.99 16 38 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 39 H 0.05 0.50 5.87 -51.93 -0.30 0.20 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.48 7.76 -51.92 -0.40 0.08 16 LS Contribution 333.50 15.07 5.03 5.03 Total: -1.00 -28.79 333.50 -7.16 -35.95 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.95 Total: 7.03 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -0.42 Total: -21.80 kcal Atomic # 7 Polarization: -20.79 SS G_CDS: 0.61 Total: -20.18 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -1.39 Total: -19.71 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.79 -7.16 -35.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.535 kcal (2) G-P(sol) polarization free energy of solvation -28.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds