Wall clock time and date at job start Tue Mar 31 2020 01:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99861 * 2 1 4 4 C 1.52997 * 109.47223 * 199.88726 * 3 2 1 5 5 C 1.53004 * 109.46911 * 65.00230 * 4 3 2 6 6 H 1.08996 * 109.47034 * 304.99296 * 5 4 3 7 7 C 1.53008 * 109.47004 * 185.00055 * 5 4 3 8 8 O 1.42895 * 109.47346 * 65.00169 * 5 4 3 9 9 C 1.35682 * 116.99909 * 208.63740 * 8 5 4 10 10 C 1.39314 * 119.81474 * 353.75510 * 9 8 5 11 11 C 1.36437 * 120.18448 * 180.02562 * 10 9 8 12 12 C 1.40838 * 119.81159 * 0.02562 * 11 10 9 13 13 C 1.41210 * 120.18044 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99959 * 333.94887 * 13 12 11 15 15 C 1.39889 * 119.99989 * 153.95035 * 13 12 11 16 16 N 1.30881 * 120.00146 * 344.64677 * 15 13 12 17 17 Si 1.86805 * 119.99944 * 164.63868 * 15 13 12 18 18 H 1.48505 * 109.46577 * 90.00346 * 17 15 13 19 19 H 1.48493 * 109.47097 * 210.00136 * 17 15 13 20 20 H 1.48494 * 109.46994 * 330.00664 * 17 15 13 21 21 C 1.40842 * 119.63956 * 0.25305 * 12 11 10 22 22 C 1.36435 * 119.80890 * 359.46039 * 21 12 11 23 23 O 1.42900 * 109.47482 * 79.88735 * 3 2 1 24 24 C 1.42904 * 114.00013 * 286.69409 * 23 3 2 25 25 H 1.08998 * 109.46862 * 59.93082 * 1 2 3 26 26 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47501 * 299.92671 * 1 2 3 28 28 H 1.09001 * 109.46986 * 319.88890 * 3 2 1 29 29 H 1.08995 * 109.47679 * 304.99764 * 4 3 2 30 30 H 1.09007 * 109.47505 * 184.99768 * 4 3 2 31 31 H 1.09000 * 109.46978 * 180.02562 * 7 5 4 32 32 H 1.08996 * 109.46606 * 299.99504 * 7 5 4 33 33 H 1.08996 * 109.47269 * 59.99426 * 7 5 4 34 34 H 1.07999 * 119.90927 * 0.02693 * 10 9 8 35 35 H 1.07999 * 120.09349 * 179.97438 * 11 10 9 36 36 H 0.97003 * 120.00086 * 180.02562 * 16 15 13 37 37 H 1.07990 * 120.09149 * 179.72693 * 21 12 11 38 38 H 1.08005 * 119.90607 * 180.27488 * 22 21 12 39 39 H 1.08997 * 109.47334 * 78.82904 * 24 23 3 40 40 H 1.09003 * 109.46912 * 198.83122 * 24 23 3 41 41 H 1.09008 * 109.46790 * 318.82561 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4568 1.2197 -0.4907 5 6 3.4735 0.7693 -1.9528 6 1 2.9252 -0.1677 -2.0506 7 6 4.9202 0.5632 -2.4065 8 8 2.8570 1.7692 -2.7664 9 6 2.2515 1.3492 -3.9056 10 6 2.3635 0.0175 -4.2992 11 6 1.7581 -0.4129 -5.4436 12 6 1.0187 0.4935 -6.2281 13 6 0.3894 0.0566 -7.4142 14 1 0.7800 -0.7957 -7.9504 15 6 -0.7401 0.7276 -7.8949 16 7 -1.3919 1.5528 -7.1157 17 14 -1.3178 0.4461 -9.6489 18 1 -2.2828 -0.6823 -9.6770 19 1 -1.9787 1.6755 -10.1556 20 1 -0.1511 0.1212 -10.5081 21 6 0.9153 1.8393 -5.8261 22 6 1.5219 2.2521 -4.6758 23 8 1.9879 1.8369 1.3263 24 6 0.6903 2.2397 1.7693 25 1 -0.3633 0.5149 -0.8894 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5127 0.8906 28 1 1.4399 1.9571 -0.6621 29 1 4.0048 0.5001 0.1175 30 1 3.9276 2.1993 -0.4070 31 1 4.9321 0.2427 -3.4482 32 1 5.4685 1.5001 -2.3087 33 1 5.3905 -0.1995 -1.7859 34 1 2.9312 -0.6761 -3.6967 35 1 1.8463 -1.4455 -5.7476 36 1 -2.1753 2.0179 -7.4488 37 1 0.3539 2.5415 -6.4243 38 1 1.4399 3.2829 -4.3638 39 1 0.1218 1.3614 2.0750 40 1 0.7901 2.9203 2.6149 41 1 0.1693 2.7449 0.9559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225264630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:14 Heat of formation + Delta-G solvation = -131.583059 kcal Electronic energy + Delta-G solvation = -22311.149243 eV Core-core repulsion = 18962.794891 eV Total energy + Delta-G solvation = -3348.354352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.96645 -40.09401 -38.34904 -36.96995 -35.38398 -34.19998 -31.60980 -30.86429 -30.47122 -27.83762 -26.94499 -26.76318 -24.26148 -23.49438 -22.57554 -21.40634 -19.28087 -18.92526 -18.30251 -18.17047 -17.15663 -16.97632 -16.22414 -15.81220 -15.73816 -15.39739 -15.11857 -14.95488 -14.51616 -14.35669 -14.19543 -13.96164 -13.67951 -13.56225 -13.25729 -13.00536 -12.92368 -12.79052 -12.69451 -12.39892 -12.33821 -12.16718 -11.80816 -11.67370 -11.43704 -11.09663 -11.05303 -10.88101 -10.76570 -9.54565 -8.87437 -8.57414 -6.22845 0.96267 1.04001 1.39845 1.49972 1.55250 2.23440 2.46516 2.55227 2.75452 2.83594 3.70668 3.74608 3.87351 4.00897 4.10434 4.20329 4.29905 4.34772 4.36534 4.38744 4.47814 4.50314 4.64141 4.68668 4.74032 4.83268 4.86801 4.95594 5.02171 5.12097 5.23573 5.27824 5.34069 5.60603 5.67049 5.91335 5.94184 6.02467 6.06879 6.28145 6.58327 6.82544 6.96550 7.11443 8.39267 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.023330 B = 0.004126 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.866346 B = 6785.353267 C = 7368.303944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.408 6.408 3 C 0.243 3.757 4 C -0.090 4.090 5 C 0.082 3.918 6 H 0.066 0.934 7 C -0.168 4.168 8 O -0.330 6.330 9 C 0.011 3.989 10 C -0.164 4.164 11 C -0.206 4.206 12 C 0.055 3.945 13 C -0.501 4.501 14 H 0.074 0.926 15 C 0.034 3.966 16 N -0.836 5.836 17 Si 0.981 3.019 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.260 1.260 21 C -0.149 4.149 22 C -0.136 4.136 23 O -0.407 6.407 24 C 0.013 3.987 25 H 0.031 0.969 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.286 0.714 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 0.133 12.650 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.329 6.329 3 C 0.148 3.852 4 C -0.128 4.128 5 C 0.025 3.975 6 H 0.084 0.916 7 C -0.225 4.225 8 O -0.247 6.247 9 C -0.033 4.033 10 C -0.183 4.183 11 C -0.226 4.226 12 C 0.053 3.947 13 C -0.531 4.531 14 H 0.092 0.908 15 C -0.179 4.179 16 N -0.463 5.463 17 Si 0.802 3.198 18 H -0.188 1.188 19 H -0.192 1.192 20 H -0.184 1.184 21 C -0.168 4.168 22 C -0.155 4.155 23 O -0.328 6.328 24 C -0.082 4.082 25 H 0.050 0.950 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.142 0.858 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.077 0.923 40 H 0.124 0.876 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.205 0.325 12.844 13.518 hybrid contribution -1.076 -0.056 -0.986 1.461 sum 3.129 0.269 11.857 12.266 Atomic orbital electron populations 1.23291 0.80071 1.04421 1.00880 1.87951 1.21168 1.29899 1.93883 1.23413 0.96263 0.82229 0.83337 1.21560 0.92924 1.05267 0.93002 1.22345 0.94618 0.91440 0.89074 0.91581 1.22250 0.94665 1.03564 1.02010 1.85860 1.69812 1.36499 1.32488 1.18608 1.01617 0.93350 0.89750 1.20691 1.04166 0.94688 0.98723 1.20821 1.06360 0.98377 0.97022 1.17924 0.91903 0.91635 0.93211 1.19703 1.11064 1.14287 1.08065 0.90765 1.26690 0.95324 0.92988 1.02917 1.69877 1.15581 1.23193 1.37637 0.85225 0.78844 0.78837 0.76917 1.18817 1.19173 1.18359 1.20890 1.02332 0.96218 0.97392 1.20008 1.00697 0.98325 0.96444 1.87950 1.31174 1.80710 1.32991 1.23261 0.84141 1.00152 1.00663 0.94987 0.88167 0.91150 0.93339 0.87036 0.87997 0.93030 0.91033 0.88855 0.85776 0.87927 0.90333 0.87267 0.87366 0.92319 0.87609 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 10.57 113.37 1.20 1.43 16 2 O -0.41 -12.37 10.04 -126.21 -1.27 -13.64 16 3 C 0.24 7.01 2.81 71.98 0.20 7.21 16 4 C -0.09 -2.35 5.00 30.59 0.15 -2.19 16 5 C 0.08 2.49 2.15 30.60 0.07 2.56 16 6 H 0.07 2.21 5.64 -2.39 -0.01 2.19 16 7 C -0.17 -4.25 9.26 71.98 0.67 -3.59 16 8 O -0.33 -12.80 9.23 -90.00 -0.83 -13.63 16 9 C 0.01 0.48 6.66 22.79 0.15 0.63 16 10 C -0.16 -7.33 8.34 22.11 0.18 -7.14 16 11 C -0.21 -10.25 9.74 22.49 0.22 -10.04 16 12 C 0.06 3.03 5.56 -21.28 -0.12 2.92 16 13 C -0.50 -27.38 9.04 23.40 0.21 -27.17 16 14 H 0.07 3.90 7.89 -2.91 -0.02 3.88 16 15 C 0.03 1.73 5.18 85.23 0.44 2.18 16 16 N -0.84 -44.25 10.93 21.82 0.24 -44.01 16 17 Si 0.98 38.64 29.59 68.60 2.03 40.67 16 18 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 19 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 21 C -0.15 -7.99 8.63 22.49 0.19 -7.80 16 22 C -0.14 -6.62 9.92 22.11 0.22 -6.40 16 23 O -0.41 -10.82 10.61 -126.21 -1.34 -12.15 16 24 C 0.01 0.26 9.77 113.37 1.11 1.37 16 25 H 0.03 0.91 8.09 -2.39 -0.02 0.89 16 26 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.07 1.46 4.51 -2.39 -0.01 1.45 16 28 H 0.05 1.58 7.15 -2.39 -0.02 1.56 16 29 H 0.11 2.46 8.14 -2.39 -0.02 2.45 16 30 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.05 1.48 7.26 -2.39 -0.02 1.46 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.12 4.80 5.52 -2.91 -0.02 4.78 16 35 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 36 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 37 H 0.11 6.10 6.20 -2.92 -0.02 6.08 16 38 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.06 1.05 5.87 -2.39 -0.01 1.04 16 40 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.05 0.91 7.76 -2.38 -0.02 0.89 16 Total: -1.00 -62.61 333.50 4.75 -57.86 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 1.02 Total: 30.93 kcal Atomic # 6 Polarization: -50.92 SS G_CDS: 4.90 Total: -46.03 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.24 Total: -44.01 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -3.44 Total: -39.42 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -62.61 4.75 -57.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225264630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.721 kcal (2) G-P(sol) polarization free energy of solvation -62.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds