Wall clock time and date at job start Tue Mar 31 2020 01:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47240 * 2 1 4 4 C 1.42899 * 114.00680 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46508 * 330.00255 * 4 3 2 6 6 C 1.52995 * 109.47006 * 89.99285 * 4 3 2 7 7 C 1.52992 * 109.47537 * 210.00161 * 4 3 2 8 8 O 1.42895 * 109.47230 * 294.99534 * 7 4 3 9 9 C 1.35742 * 117.00616 * 180.02562 * 8 7 4 10 10 C 1.41191 * 120.28375 * 89.99690 * 9 8 7 11 11 C 1.41184 * 120.26889 * 0.02562 * 10 9 8 12 12 H 1.08006 * 119.99609 * 24.49786 * 11 10 9 13 13 C 1.39915 * 120.00263 * 204.49971 * 11 10 9 14 14 N 1.30879 * 120.00128 * 17.67366 * 13 11 10 15 15 Si 1.86796 * 120.00233 * 197.67239 * 13 11 10 16 16 H 1.48507 * 109.46958 * 359.97438 * 15 13 11 17 17 H 1.48490 * 109.47431 * 120.00048 * 15 13 11 18 18 H 1.48509 * 109.47273 * 240.00349 * 15 13 11 19 19 C 1.40770 * 119.46880 * 179.72562 * 10 9 8 20 20 C 1.36492 * 120.02290 * 0.25661 * 19 10 9 21 21 C 1.38763 * 120.57982 * 359.97438 * 20 19 10 22 22 C 1.38704 * 120.53804 * 0.02661 * 21 20 19 23 23 O 1.36017 * 120.02172 * 179.97438 * 22 21 20 24 24 C 1.42898 * 116.99821 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.46910 * 300.00045 * 1 2 3 26 26 H 1.08993 * 109.47207 * 59.99786 * 1 2 3 27 27 H 1.08998 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46910 * 239.99955 * 2 1 3 29 29 H 1.09006 * 109.47272 * 119.99542 * 2 1 3 30 30 H 1.09006 * 109.47012 * 180.02562 * 6 4 3 31 31 H 1.08996 * 109.48175 * 300.00679 * 6 4 3 32 32 H 1.09004 * 109.47215 * 60.01131 * 6 4 3 33 33 H 1.09005 * 109.47131 * 174.99608 * 7 4 3 34 34 H 1.08996 * 109.47581 * 54.99702 * 7 4 3 35 35 H 0.97000 * 120.00048 * 180.02562 * 14 13 11 36 36 H 1.07999 * 119.99009 * 180.27769 * 19 10 9 37 37 H 1.08002 * 119.70703 * 180.02562 * 20 19 10 38 38 H 1.08005 * 119.73029 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.47326 * 59.99927 * 24 23 22 40 40 H 1.09000 * 109.47069 * 179.97438 * 24 23 22 41 41 H 1.09005 * 109.47361 * 299.99844 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8636 0.6015 0.5129 6 6 3.9386 1.5005 -1.4433 7 6 3.8409 2.7456 0.7207 8 8 3.3719 3.8760 -0.0170 9 6 3.6542 5.1032 0.4901 10 6 4.8452 5.7677 0.1249 11 6 5.7523 5.1614 -0.7712 12 1 5.4030 4.4183 -1.4728 13 6 7.1037 5.5233 -0.7504 14 7 7.5995 6.1420 0.2909 15 14 8.2003 5.1235 -2.2088 16 1 7.4040 4.4258 -3.2502 17 1 8.7561 6.3811 -2.7697 18 1 9.3127 4.2451 -1.7657 19 6 5.1180 7.0423 0.6564 20 6 4.2373 7.6242 1.5217 21 6 3.0686 6.9704 1.8854 22 6 2.7762 5.7139 1.3759 23 8 1.6278 5.0823 1.7399 24 6 0.7693 5.7714 2.6510 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 5.0253 1.5863 -1.4437 31 1 3.6466 0.5848 -1.9572 32 1 3.5060 2.3592 -1.9569 33 1 4.9274 2.7879 0.7985 34 1 3.4045 2.7570 1.7194 35 1 8.5363 6.3932 0.3052 36 1 6.0244 7.5601 0.3793 37 1 4.4515 8.6024 1.9261 38 1 2.3815 7.4434 2.5714 39 1 0.4560 6.7177 2.2099 40 1 -0.1084 5.1588 2.8571 41 1 1.3051 5.9635 3.5806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225841494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:52 Heat of formation + Delta-G solvation = -111.925266 kcal Electronic energy + Delta-G solvation = -22715.847221 eV Core-core repulsion = 19368.345296 eV Total energy + Delta-G solvation = -3347.501926 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.04304 -38.09886 -36.80608 -35.58925 -33.46471 -32.31051 -29.96517 -29.38173 -28.42930 -26.44542 -25.95588 -24.91130 -22.61587 -21.06020 -20.80015 -20.28336 -17.84988 -16.83347 -16.07786 -15.68065 -15.50785 -15.35498 -14.94392 -14.78530 -14.53925 -13.71629 -13.63107 -13.15634 -12.92122 -12.84210 -12.53475 -12.26770 -11.93005 -11.84038 -11.63968 -11.48220 -11.26777 -11.10626 -11.04776 -10.74890 -10.67847 -10.47930 -10.40395 -10.15046 -9.91206 -9.55806 -9.18398 -9.12413 -8.48827 -7.42451 -6.92265 -6.73943 -4.42018 2.64563 2.92525 3.04304 3.10697 3.17685 3.87113 4.02361 4.30886 4.51791 4.88448 5.16321 5.22386 5.46976 5.47978 5.57086 5.58820 5.69531 5.70972 5.75053 5.88593 5.94240 6.02164 6.16072 6.21287 6.25281 6.32221 6.41505 6.46634 6.51195 6.83421 6.86504 6.96122 7.13200 7.22269 7.62947 7.68579 7.77278 7.94145 8.05491 8.42812 8.46936 8.73637 8.81458 9.26203 10.07376 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.012935 B = 0.007066 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.231125 B = 3961.657848 C = 5917.299361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.367 6.367 4 C 0.095 3.905 5 H 0.061 0.939 6 C -0.167 4.167 7 C 0.068 3.932 8 O -0.297 6.297 9 C -0.062 4.062 10 C 0.126 3.874 11 C -0.438 4.438 12 H 0.088 0.912 13 C 0.075 3.925 14 N -0.785 5.785 15 Si 0.908 3.092 16 H -0.257 1.257 17 H -0.271 1.271 18 H -0.274 1.274 19 C -0.181 4.181 20 C -0.077 4.077 21 C -0.320 4.320 22 C 0.135 3.865 23 O -0.316 6.316 24 C 0.035 3.965 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.282 0.718 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.592 -7.174 0.933 9.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.287 6.287 4 C 0.037 3.963 5 H 0.079 0.921 6 C -0.224 4.224 7 C -0.008 4.008 8 O -0.213 6.213 9 C -0.108 4.108 10 C 0.123 3.877 11 C -0.466 4.466 12 H 0.106 0.894 13 C -0.144 4.144 14 N -0.410 5.410 15 Si 0.732 3.268 16 H -0.180 1.180 17 H -0.196 1.196 18 H -0.199 1.199 19 C -0.201 4.201 20 C -0.095 4.095 21 C -0.340 4.340 22 C 0.091 3.909 23 O -0.230 6.230 24 C -0.061 4.061 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.652 -7.159 0.803 9.156 hybrid contribution 0.888 -0.056 -0.010 0.889 sum -4.764 -7.215 0.793 8.682 Atomic orbital electron populations 1.21706 0.94209 1.01460 1.03234 1.22439 0.95439 0.85187 0.99253 1.88121 1.21002 1.24559 1.94973 1.22172 0.81138 0.96502 0.96459 0.92125 1.22143 1.01536 1.02094 0.96634 1.22583 0.98001 0.85884 0.94299 1.86076 1.76886 1.10557 1.47781 1.17899 0.98581 0.87344 1.06961 1.17640 0.89172 0.91006 0.89908 1.19583 0.91614 1.19920 1.15496 0.89373 1.26002 0.99130 0.93037 0.96240 1.69874 1.15187 1.29144 1.26755 0.86254 0.79513 0.79223 0.81823 1.18049 1.19578 1.19939 1.20931 1.00716 0.95713 1.02697 1.20214 0.93806 0.97769 0.97757 1.20299 1.02653 0.97964 1.13110 1.19242 0.85570 0.92130 0.93999 1.86132 1.30781 1.44931 1.61155 1.22778 0.93363 0.97432 0.92538 0.91919 0.91885 0.91754 0.93979 0.94077 0.91633 0.93749 0.90390 0.92150 0.94163 0.90745 0.86108 0.89124 0.88536 0.93694 0.89905 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 37.16 0.38 -1.36 16 2 C 0.05 0.73 6.47 37.16 0.24 0.97 16 3 O -0.37 -6.69 9.95 -40.08 -0.40 -7.09 16 4 C 0.09 1.67 3.13 -26.74 -0.08 1.59 16 5 H 0.06 0.90 7.79 -51.93 -0.40 0.50 16 6 C -0.17 -2.82 9.33 37.16 0.35 -2.47 16 7 C 0.07 1.45 5.93 37.15 0.22 1.67 16 8 O -0.30 -7.38 8.22 -39.93 -0.33 -7.70 16 9 C -0.06 -1.63 5.77 -38.23 -0.22 -1.85 16 10 C 0.13 3.38 5.58 -106.70 -0.60 2.79 16 11 C -0.44 -11.41 8.72 -37.84 -0.33 -11.74 16 12 H 0.09 2.28 7.65 -52.48 -0.40 1.88 16 13 C 0.07 1.82 5.14 -17.33 -0.09 1.73 16 14 N -0.79 -19.57 10.97 55.55 0.61 -18.96 16 15 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 16 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 17 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 C -0.18 -4.69 8.64 -39.26 -0.34 -5.03 16 20 C -0.08 -1.82 9.96 -40.02 -0.40 -2.22 16 21 C -0.32 -7.42 9.05 -39.22 -0.35 -7.78 16 22 C 0.14 3.34 6.69 -39.17 -0.26 3.07 16 23 O -0.32 -7.16 10.28 -34.34 -0.35 -7.51 16 24 C 0.03 0.58 9.81 101.05 0.99 1.58 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.52 7.87 -51.93 -0.41 0.11 16 29 H 0.04 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.63 7.87 -51.93 -0.41 0.22 16 32 H 0.08 1.51 7.56 -51.93 -0.39 1.11 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 36 H 0.12 3.17 6.17 -52.49 -0.32 2.85 16 37 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 38 H 0.10 1.97 6.27 -52.48 -0.33 1.64 16 39 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.04 0.69 7.66 -51.93 -0.40 0.29 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -29.41 342.76 -7.23 -36.64 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.40 Total: 5.33 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -0.49 Total: -19.05 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.61 Total: -18.96 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -1.08 Total: -22.30 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.41 -7.23 -36.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.286 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds