Wall clock time and date at job start Tue Mar 31 2020 01:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47240 * 2 1 4 4 C 1.42899 * 114.00680 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46508 * 330.00255 * 4 3 2 6 6 C 1.52995 * 109.47006 * 89.99285 * 4 3 2 7 7 C 1.52992 * 109.47537 * 210.00161 * 4 3 2 8 8 O 1.42895 * 109.47230 * 294.99534 * 7 4 3 9 9 C 1.35742 * 117.00616 * 180.02562 * 8 7 4 10 10 C 1.41191 * 120.28375 * 89.99690 * 9 8 7 11 11 C 1.41184 * 120.26889 * 0.02562 * 10 9 8 12 12 H 1.08006 * 119.99609 * 24.49786 * 11 10 9 13 13 C 1.39915 * 120.00263 * 204.49971 * 11 10 9 14 14 N 1.30879 * 120.00128 * 17.67366 * 13 11 10 15 15 Si 1.86796 * 120.00233 * 197.67239 * 13 11 10 16 16 H 1.48507 * 109.46958 * 359.97438 * 15 13 11 17 17 H 1.48490 * 109.47431 * 120.00048 * 15 13 11 18 18 H 1.48509 * 109.47273 * 240.00349 * 15 13 11 19 19 C 1.40770 * 119.46880 * 179.72562 * 10 9 8 20 20 C 1.36492 * 120.02290 * 0.25661 * 19 10 9 21 21 C 1.38763 * 120.57982 * 359.97438 * 20 19 10 22 22 C 1.38704 * 120.53804 * 0.02661 * 21 20 19 23 23 O 1.36017 * 120.02172 * 179.97438 * 22 21 20 24 24 C 1.42898 * 116.99821 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.46910 * 300.00045 * 1 2 3 26 26 H 1.08993 * 109.47207 * 59.99786 * 1 2 3 27 27 H 1.08998 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46910 * 239.99955 * 2 1 3 29 29 H 1.09006 * 109.47272 * 119.99542 * 2 1 3 30 30 H 1.09006 * 109.47012 * 180.02562 * 6 4 3 31 31 H 1.08996 * 109.48175 * 300.00679 * 6 4 3 32 32 H 1.09004 * 109.47215 * 60.01131 * 6 4 3 33 33 H 1.09005 * 109.47131 * 174.99608 * 7 4 3 34 34 H 1.08996 * 109.47581 * 54.99702 * 7 4 3 35 35 H 0.97000 * 120.00048 * 180.02562 * 14 13 11 36 36 H 1.07999 * 119.99009 * 180.27769 * 19 10 9 37 37 H 1.08002 * 119.70703 * 180.02562 * 20 19 10 38 38 H 1.08005 * 119.73029 * 179.97438 * 21 20 19 39 39 H 1.09003 * 109.47326 * 59.99927 * 24 23 22 40 40 H 1.09000 * 109.47069 * 179.97438 * 24 23 22 41 41 H 1.09005 * 109.47361 * 299.99844 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8636 0.6015 0.5129 6 6 3.9386 1.5005 -1.4433 7 6 3.8409 2.7456 0.7207 8 8 3.3719 3.8760 -0.0170 9 6 3.6542 5.1032 0.4901 10 6 4.8452 5.7677 0.1249 11 6 5.7523 5.1614 -0.7712 12 1 5.4030 4.4183 -1.4728 13 6 7.1037 5.5233 -0.7504 14 7 7.5995 6.1420 0.2909 15 14 8.2003 5.1235 -2.2088 16 1 7.4040 4.4258 -3.2502 17 1 8.7561 6.3811 -2.7697 18 1 9.3127 4.2451 -1.7657 19 6 5.1180 7.0423 0.6564 20 6 4.2373 7.6242 1.5217 21 6 3.0686 6.9704 1.8854 22 6 2.7762 5.7139 1.3759 23 8 1.6278 5.0823 1.7399 24 6 0.7693 5.7714 2.6510 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 5.0253 1.5863 -1.4437 31 1 3.6466 0.5848 -1.9572 32 1 3.5060 2.3592 -1.9569 33 1 4.9274 2.7879 0.7985 34 1 3.4045 2.7570 1.7194 35 1 8.5363 6.3932 0.3052 36 1 6.0244 7.5601 0.3793 37 1 4.4515 8.6024 1.9261 38 1 2.3815 7.4434 2.5714 39 1 0.4560 6.7177 2.2099 40 1 -0.1084 5.1588 2.8571 41 1 1.3051 5.9635 3.5806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225841494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:51 Heat of formation + Delta-G solvation = -128.359759 kcal Electronic energy + Delta-G solvation = -22716.559875 eV Core-core repulsion = 19368.345296 eV Total energy + Delta-G solvation = -3348.214579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.82574 -39.52141 -38.49511 -37.38454 -35.32458 -33.62092 -31.37186 -31.07325 -30.14240 -28.01977 -27.60144 -26.71291 -23.65168 -22.76430 -22.63754 -21.91346 -19.66751 -18.46295 -17.76159 -17.40098 -17.18360 -16.67869 -16.51013 -16.40884 -15.99976 -15.35248 -15.33882 -14.79648 -14.49631 -14.12618 -14.03004 -13.75833 -13.43734 -13.31511 -13.12544 -12.86837 -12.79617 -12.67018 -12.41623 -12.24896 -12.20840 -12.09877 -11.92377 -11.68617 -11.65496 -11.33829 -11.01099 -10.41471 -10.33670 -9.34300 -8.77158 -8.60269 -6.37279 0.81375 1.05434 1.38804 1.50121 1.54323 2.19595 2.63633 2.72834 2.80191 3.15051 3.73638 3.93064 4.08742 4.22437 4.31480 4.33564 4.40741 4.45196 4.50873 4.52205 4.59470 4.66334 4.73814 4.75293 4.81545 4.93052 5.00558 5.04182 5.07064 5.07524 5.25473 5.29695 5.33320 5.43645 5.76042 5.91890 6.03547 6.11972 6.42243 6.50942 6.68245 6.81014 6.90865 7.38632 8.26488 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.012935 B = 0.007066 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.231125 B = 3961.657848 C = 5917.299361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 O -0.399 6.399 4 C 0.100 3.900 5 H 0.094 0.906 6 C -0.160 4.160 7 C 0.069 3.931 8 O -0.312 6.312 9 C -0.089 4.089 10 C 0.099 3.901 11 C -0.465 4.465 12 H 0.076 0.924 13 C 0.040 3.960 14 N -0.811 5.811 15 Si 0.979 3.021 16 H -0.260 1.260 17 H -0.261 1.261 18 H -0.262 1.262 19 C -0.206 4.206 20 C -0.077 4.077 21 C -0.318 4.318 22 C 0.126 3.874 23 O -0.337 6.337 24 C 0.025 3.975 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.029 0.971 35 H 0.292 0.708 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.055 0.945 40 H 0.114 0.886 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.971 -8.180 1.101 10.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.319 6.319 4 C 0.043 3.957 5 H 0.112 0.888 6 C -0.217 4.217 7 C -0.007 4.007 8 O -0.229 6.229 9 C -0.135 4.135 10 C 0.096 3.904 11 C -0.493 4.493 12 H 0.094 0.906 13 C -0.177 4.177 14 N -0.436 5.436 15 Si 0.799 3.201 16 H -0.183 1.183 17 H -0.186 1.186 18 H -0.186 1.186 19 C -0.225 4.225 20 C -0.095 4.095 21 C -0.337 4.337 22 C 0.081 3.919 23 O -0.251 6.251 24 C -0.069 4.069 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.074 0.926 40 H 0.133 0.867 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.053 -8.164 0.994 10.212 hybrid contribution 0.858 0.230 0.052 0.890 sum -5.195 -7.933 1.046 9.541 Atomic orbital electron populations 1.21737 0.93062 1.03263 1.02294 1.22760 0.96449 0.83232 1.00769 1.88078 1.20915 1.27752 1.95168 1.22121 0.81649 0.95327 0.96632 0.88804 1.22066 1.01275 1.02133 0.96266 1.22681 0.97118 0.86617 0.94269 1.86014 1.77112 1.10965 1.48760 1.18230 0.99198 0.88249 1.07789 1.17989 0.90021 0.91757 0.90681 1.19655 0.92844 1.20760 1.16038 0.90559 1.26770 0.99727 0.92483 0.98678 1.69897 1.16132 1.29393 1.28176 0.85200 0.77532 0.79368 0.77978 1.18343 1.18594 1.18609 1.20936 1.01277 0.95887 1.04414 1.20542 0.93373 0.98845 0.96749 1.20634 1.02825 0.97349 1.12922 1.19389 0.86151 0.92605 0.93760 1.86094 1.30530 1.46132 1.62375 1.23151 0.93493 0.98425 0.91872 0.92851 0.92832 0.88554 0.92398 0.92462 0.91626 0.90700 0.93620 0.93527 0.95277 0.89730 0.87177 0.86180 0.85360 0.92603 0.86738 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 10.28 71.98 0.74 -2.41 16 2 C 0.04 1.10 6.47 71.98 0.47 1.56 16 3 O -0.40 -14.32 9.95 -144.34 -1.44 -15.75 16 4 C 0.10 3.49 3.13 30.59 0.10 3.59 16 5 H 0.09 2.62 7.79 -2.38 -0.02 2.60 16 6 C -0.16 -5.37 9.33 71.98 0.67 -4.70 16 7 C 0.07 3.02 5.93 71.98 0.43 3.45 16 8 O -0.31 -16.19 8.22 -70.59 -0.58 -16.77 16 9 C -0.09 -4.85 5.77 23.15 0.13 -4.71 16 10 C 0.10 5.52 5.58 -21.21 -0.12 5.40 16 11 C -0.46 -25.27 8.72 23.40 0.20 -25.07 16 12 H 0.08 4.18 7.65 -2.91 -0.02 4.16 16 13 C 0.04 1.99 5.14 85.24 0.44 2.43 16 14 N -0.81 -41.18 10.97 21.82 0.24 -40.94 16 15 Si 0.98 37.59 29.59 68.60 2.03 39.62 16 16 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 17 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 18 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 19 C -0.21 -10.95 8.64 22.48 0.19 -10.75 16 20 C -0.08 -3.61 9.96 21.99 0.22 -3.39 16 21 C -0.32 -14.46 9.05 22.51 0.20 -14.26 16 22 C 0.13 6.29 6.69 22.53 0.15 6.44 16 23 O -0.34 -15.17 10.28 -79.85 -0.82 -15.99 16 24 C 0.03 0.79 9.81 113.37 1.11 1.91 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.26 7.87 -2.39 -0.02 1.24 16 29 H 0.06 1.24 8.09 -2.38 -0.02 1.22 16 30 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.07 2.01 7.87 -2.39 -0.02 1.99 16 32 H 0.04 1.81 7.56 -2.38 -0.02 1.79 16 33 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.29 13.21 8.30 -92.71 -0.77 12.45 16 36 H 0.11 5.98 6.17 -2.91 -0.02 5.96 16 37 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.13 4.91 6.27 -2.91 -0.02 4.89 16 39 H 0.06 1.63 7.66 -2.39 -0.02 1.62 16 40 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.05 1.60 7.66 -2.38 -0.02 1.58 16 Total: -1.00 -66.16 342.76 5.37 -60.79 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 1.00 Total: 29.57 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 4.94 Total: -40.53 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.24 Total: -40.94 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -2.84 Total: -48.52 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -66.16 5.37 -60.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.569 kcal (2) G-P(sol) polarization free energy of solvation -66.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds