Wall clock time and date at job start Tue Mar 31 2020 01:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47218 * 2 1 4 4 H 1.08996 * 109.46855 * 305.29897 * 3 2 1 5 5 C 1.52992 * 109.47277 * 185.29515 * 3 2 1 6 6 O 1.42901 * 109.46961 * 305.00097 * 5 3 2 7 7 C 1.35744 * 117.00057 * 179.97438 * 6 5 3 8 8 C 1.41193 * 120.28961 * 270.00100 * 7 6 5 9 9 C 1.41180 * 120.26012 * 359.97438 * 8 7 6 10 10 H 1.08002 * 120.00092 * 334.43904 * 9 8 7 11 11 C 1.39925 * 119.99970 * 154.44250 * 9 8 7 12 12 N 1.30863 * 120.00115 * 343.57315 * 11 9 8 13 13 Si 1.86808 * 119.99830 * 163.57518 * 11 9 8 14 14 H 1.48505 * 109.46827 * 94.96177 * 13 11 9 15 15 H 1.48498 * 109.46904 * 214.96130 * 13 11 9 16 16 H 1.48493 * 109.47283 * 334.96092 * 13 11 9 17 17 C 1.40766 * 119.47654 * 180.02562 * 8 7 6 18 18 C 1.36488 * 120.02041 * 359.97438 * 17 8 7 19 19 C 1.38773 * 120.58124 * 0.02571 * 18 17 8 20 20 C 1.38702 * 120.53698 * 359.97438 * 19 18 17 21 21 O 1.36012 * 120.01939 * 179.74725 * 20 19 18 22 22 C 1.42901 * 117.00230 * 359.97438 * 21 20 19 23 23 O 1.42902 * 109.46717 * 65.29405 * 3 2 1 24 24 C 1.42902 * 113.99601 * 209.72814 * 23 3 2 25 25 H 1.09003 * 109.46988 * 303.81726 * 1 2 3 26 26 H 1.08996 * 109.47543 * 63.82094 * 1 2 3 27 27 H 1.09001 * 109.47006 * 183.82268 * 1 2 3 28 28 H 1.09003 * 109.46923 * 240.00470 * 2 1 3 29 29 H 1.08998 * 109.47541 * 119.99836 * 2 1 3 30 30 H 1.09000 * 109.47352 * 185.00569 * 5 3 2 31 31 H 1.09001 * 109.47263 * 64.99951 * 5 3 2 32 32 H 0.96998 * 120.00370 * 179.97438 * 12 11 9 33 33 H 1.07998 * 119.99016 * 180.02562 * 17 8 7 34 34 H 1.08005 * 119.71153 * 180.02562 * 18 17 8 35 35 H 1.08004 * 119.72979 * 179.97438 * 19 18 17 36 36 H 1.09005 * 109.47021 * 60.00227 * 22 21 20 37 37 H 1.09002 * 109.46887 * 180.02562 * 22 21 20 38 38 H 1.08994 * 109.47179 * 300.00126 * 22 21 20 39 39 H 1.09010 * 109.46802 * 64.35489 * 24 23 3 40 40 H 1.09004 * 109.46983 * 184.35373 * 24 23 3 41 41 H 1.08996 * 109.47539 * 304.35375 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6013 1.9830 -0.8387 5 6 3.5642 1.4446 -0.1331 6 8 4.1336 0.6389 0.9006 7 6 5.4868 0.5338 0.9251 8 6 6.1340 -0.4981 0.2112 9 6 5.3788 -1.4297 -0.5339 10 1 4.3545 -1.6363 -0.2608 11 6 5.9574 -2.0854 -1.6263 12 7 7.0598 -1.6226 -2.1583 13 14 5.1561 -3.6214 -2.3251 14 1 4.2802 -3.2479 -3.4646 15 1 6.2081 -4.5580 -2.7956 16 1 4.3433 -4.2791 -1.2707 17 6 7.5380 -0.5914 0.2490 18 6 8.2632 0.3115 0.9713 19 6 7.6288 1.3264 1.6736 20 6 6.2466 1.4404 1.6528 21 8 5.6354 2.4361 2.3492 22 6 6.4785 3.3284 3.0806 23 8 1.6679 2.0793 1.2240 24 6 1.4672 3.4894 1.1079 25 1 -0.3633 0.5720 0.8538 26 1 -0.3634 0.4534 -0.9222 27 1 -0.3633 -1.0254 0.0685 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 3.9353 2.4656 -0.0440 31 1 3.8445 1.0397 -1.1055 32 1 7.4612 -2.0773 -2.9153 33 1 8.0417 -1.3772 -0.2944 34 1 9.3403 0.2355 0.9965 35 1 8.2161 2.0332 2.2411 36 1 7.1615 3.8281 2.3935 37 1 5.8656 4.0723 3.5895 38 1 7.0516 2.7651 3.8170 39 1 0.6213 3.6829 0.4481 40 1 1.2634 3.9096 2.0929 41 1 2.3637 3.9512 0.6944 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225841607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:12 Heat of formation + Delta-G solvation = -112.095116 kcal Electronic energy + Delta-G solvation = -22947.322290 eV Core-core repulsion = 19599.812999 eV Total energy + Delta-G solvation = -3347.509291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.08757 -38.13547 -36.75301 -35.49884 -33.47788 -33.08466 -29.62330 -28.96291 -27.88891 -26.42677 -26.23091 -25.00604 -22.95015 -20.90115 -20.81616 -20.15833 -17.86639 -16.78777 -16.02194 -15.66308 -15.50082 -15.30179 -14.90262 -14.75272 -14.60252 -13.74077 -13.57460 -13.36693 -13.22471 -13.08167 -12.42747 -12.32165 -12.03431 -11.78543 -11.49653 -11.31380 -11.18547 -11.06907 -10.88193 -10.70710 -10.65594 -10.51496 -10.29440 -10.16105 -9.92001 -9.64487 -9.19623 -9.01515 -8.50845 -7.42564 -6.92968 -6.75093 -4.43231 2.64208 2.90939 3.03633 3.08849 3.17690 3.86758 4.16857 4.27453 4.52035 4.88740 5.21661 5.39379 5.50758 5.56283 5.63002 5.65080 5.66084 5.72509 5.85630 5.87528 5.90235 6.00935 6.11414 6.19458 6.31531 6.37956 6.43945 6.50668 6.55787 6.82329 6.84606 6.95115 7.11307 7.20483 7.61082 7.67030 7.75452 7.92879 8.03812 8.41356 8.44879 8.72493 8.80425 9.24380 10.07627 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.008526 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.504950 B = 3283.464465 C = 5487.307993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.098 3.902 4 H 0.062 0.938 5 C 0.044 3.956 6 O -0.295 6.295 7 C -0.062 4.062 8 C 0.126 3.874 9 C -0.437 4.437 10 H 0.088 0.912 11 C 0.074 3.926 12 N -0.787 5.787 13 Si 0.908 3.092 14 H -0.269 1.269 15 H -0.275 1.275 16 H -0.257 1.257 17 C -0.179 4.179 18 C -0.078 4.078 19 C -0.319 4.319 20 C 0.134 3.866 21 O -0.318 6.318 22 C 0.035 3.965 23 O -0.370 6.370 24 C 0.033 3.967 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.282 0.718 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.032 0.968 40 H 0.079 0.921 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.968 5.365 1.414 8.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.040 3.960 4 H 0.080 0.920 5 C -0.032 4.032 6 O -0.211 6.211 7 C -0.107 4.107 8 C 0.123 3.877 9 C -0.466 4.466 10 H 0.106 0.894 11 C -0.144 4.144 12 N -0.412 5.412 13 Si 0.732 3.268 14 H -0.194 1.194 15 H -0.200 1.200 16 H -0.181 1.181 17 C -0.199 4.199 18 C -0.096 4.096 19 C -0.339 4.339 20 C 0.089 3.911 21 O -0.232 6.232 22 C -0.061 4.061 23 O -0.289 6.289 24 C -0.064 4.064 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.098 0.902 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.161 5.173 1.517 8.186 hybrid contribution 0.424 -0.071 -0.822 0.927 sum -5.738 5.102 0.695 7.709 Atomic orbital electron populations 1.21754 0.96370 1.01253 1.01211 1.21504 0.94919 0.94887 1.04103 1.22252 0.92946 0.94428 0.86372 0.92024 1.23022 0.92649 0.94605 0.92928 1.86084 1.17179 1.68426 1.49412 1.17926 0.82530 0.99228 1.11044 1.17641 0.92018 0.89524 0.88557 1.19549 0.99953 1.17709 1.09384 0.89409 1.26000 0.94414 0.97830 0.96186 1.69852 1.17087 1.35989 1.18235 0.86288 0.79811 0.81055 0.79659 1.19448 1.19967 1.18062 1.20945 0.93926 1.01609 1.03403 1.20219 0.97534 0.95126 0.96755 1.20302 0.92142 1.07001 1.14491 1.19237 0.91234 0.87358 0.93269 1.86111 1.35269 1.40212 1.61591 1.22778 0.95380 0.92717 0.95254 1.87999 1.89294 1.19309 1.32292 1.22695 0.98906 0.83040 1.01769 0.92395 0.93672 0.92999 0.90567 0.89795 0.94766 0.92692 0.90713 0.86057 0.89108 0.88544 0.93820 0.89925 0.93637 0.94926 0.90227 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.85 37.16 0.37 -1.67 16 2 C -0.12 -1.97 5.35 -26.73 -0.14 -2.11 16 3 C 0.10 1.70 2.50 -26.73 -0.07 1.63 16 4 H 0.06 0.92 7.83 -51.93 -0.41 0.51 16 5 C 0.04 0.92 5.89 37.15 0.22 1.14 16 6 O -0.29 -7.26 8.34 -39.94 -0.33 -7.60 16 7 C -0.06 -1.60 5.77 -38.22 -0.22 -1.82 16 8 C 0.13 3.37 5.57 -106.70 -0.59 2.78 16 9 C -0.44 -11.38 8.71 -37.83 -0.33 -11.71 16 10 H 0.09 2.26 7.66 -52.49 -0.40 1.86 16 11 C 0.07 1.81 5.16 -17.33 -0.09 1.72 16 12 N -0.79 -19.63 10.94 55.55 0.61 -19.02 16 13 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 14 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 15 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 16 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 17 C -0.18 -4.64 8.63 -39.26 -0.34 -4.98 16 18 C -0.08 -1.83 9.96 -40.02 -0.40 -2.23 16 19 C -0.32 -7.36 9.05 -39.21 -0.35 -7.72 16 20 C 0.13 3.27 6.69 -39.17 -0.26 3.01 16 21 O -0.32 -7.07 10.28 -34.32 -0.35 -7.42 16 22 C 0.03 0.57 9.81 101.05 0.99 1.56 16 23 O -0.37 -6.63 9.80 -40.09 -0.39 -7.02 16 24 C 0.03 0.45 10.79 101.05 1.09 1.54 16 25 H 0.06 0.80 7.73 -51.93 -0.40 0.40 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.08 1.61 7.74 -51.93 -0.40 1.20 16 30 H 0.03 0.72 7.71 -51.93 -0.40 0.32 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.28 6.37 8.30 -40.82 -0.34 6.04 16 33 H 0.12 3.18 6.18 -52.49 -0.32 2.86 16 34 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 35 H 0.10 1.95 6.27 -52.48 -0.33 1.62 16 36 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.71 7.66 -51.93 -0.40 0.31 16 39 H 0.03 0.38 8.14 -51.92 -0.42 -0.05 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.04 0.54 7.71 -51.93 -0.40 0.14 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -29.19 341.52 -6.86 -36.05 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.38 Total: 5.54 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -0.13 Total: -18.85 kcal Atomic # 7 Polarization: -19.63 SS G_CDS: 0.61 Total: -19.02 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -1.08 Total: -22.04 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.19 -6.86 -36.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.044 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds