Wall clock time and date at job start Tue Mar 31 2020 01:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47218 * 2 1 4 4 H 1.08996 * 109.46855 * 305.29897 * 3 2 1 5 5 C 1.52992 * 109.47277 * 185.29515 * 3 2 1 6 6 O 1.42901 * 109.46961 * 305.00097 * 5 3 2 7 7 C 1.35744 * 117.00057 * 179.97438 * 6 5 3 8 8 C 1.41193 * 120.28961 * 270.00100 * 7 6 5 9 9 C 1.41180 * 120.26012 * 359.97438 * 8 7 6 10 10 H 1.08002 * 120.00092 * 334.43904 * 9 8 7 11 11 C 1.39925 * 119.99970 * 154.44250 * 9 8 7 12 12 N 1.30863 * 120.00115 * 343.57315 * 11 9 8 13 13 Si 1.86808 * 119.99830 * 163.57518 * 11 9 8 14 14 H 1.48505 * 109.46827 * 94.96177 * 13 11 9 15 15 H 1.48498 * 109.46904 * 214.96130 * 13 11 9 16 16 H 1.48493 * 109.47283 * 334.96092 * 13 11 9 17 17 C 1.40766 * 119.47654 * 180.02562 * 8 7 6 18 18 C 1.36488 * 120.02041 * 359.97438 * 17 8 7 19 19 C 1.38773 * 120.58124 * 0.02571 * 18 17 8 20 20 C 1.38702 * 120.53698 * 359.97438 * 19 18 17 21 21 O 1.36012 * 120.01939 * 179.74725 * 20 19 18 22 22 C 1.42901 * 117.00230 * 359.97438 * 21 20 19 23 23 O 1.42902 * 109.46717 * 65.29405 * 3 2 1 24 24 C 1.42902 * 113.99601 * 209.72814 * 23 3 2 25 25 H 1.09003 * 109.46988 * 303.81726 * 1 2 3 26 26 H 1.08996 * 109.47543 * 63.82094 * 1 2 3 27 27 H 1.09001 * 109.47006 * 183.82268 * 1 2 3 28 28 H 1.09003 * 109.46923 * 240.00470 * 2 1 3 29 29 H 1.08998 * 109.47541 * 119.99836 * 2 1 3 30 30 H 1.09000 * 109.47352 * 185.00569 * 5 3 2 31 31 H 1.09001 * 109.47263 * 64.99951 * 5 3 2 32 32 H 0.96998 * 120.00370 * 179.97438 * 12 11 9 33 33 H 1.07998 * 119.99016 * 180.02562 * 17 8 7 34 34 H 1.08005 * 119.71153 * 180.02562 * 18 17 8 35 35 H 1.08004 * 119.72979 * 179.97438 * 19 18 17 36 36 H 1.09005 * 109.47021 * 60.00227 * 22 21 20 37 37 H 1.09002 * 109.46887 * 180.02562 * 22 21 20 38 38 H 1.08994 * 109.47179 * 300.00126 * 22 21 20 39 39 H 1.09010 * 109.46802 * 64.35489 * 24 23 3 40 40 H 1.09004 * 109.46983 * 184.35373 * 24 23 3 41 41 H 1.08996 * 109.47539 * 304.35375 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6013 1.9830 -0.8387 5 6 3.5642 1.4446 -0.1331 6 8 4.1336 0.6389 0.9006 7 6 5.4868 0.5338 0.9251 8 6 6.1340 -0.4981 0.2112 9 6 5.3788 -1.4297 -0.5339 10 1 4.3545 -1.6363 -0.2608 11 6 5.9574 -2.0854 -1.6263 12 7 7.0598 -1.6226 -2.1583 13 14 5.1561 -3.6214 -2.3251 14 1 4.2802 -3.2479 -3.4646 15 1 6.2081 -4.5580 -2.7956 16 1 4.3433 -4.2791 -1.2707 17 6 7.5380 -0.5914 0.2490 18 6 8.2632 0.3115 0.9713 19 6 7.6288 1.3264 1.6736 20 6 6.2466 1.4404 1.6528 21 8 5.6354 2.4361 2.3492 22 6 6.4785 3.3284 3.0806 23 8 1.6679 2.0793 1.2240 24 6 1.4672 3.4894 1.1079 25 1 -0.3633 0.5720 0.8538 26 1 -0.3634 0.4534 -0.9222 27 1 -0.3633 -1.0254 0.0685 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 3.9353 2.4656 -0.0440 31 1 3.8445 1.0397 -1.1055 32 1 7.4612 -2.0773 -2.9153 33 1 8.0417 -1.3772 -0.2944 34 1 9.3403 0.2355 0.9965 35 1 8.2161 2.0332 2.2411 36 1 7.1615 3.8281 2.3935 37 1 5.8656 4.0723 3.5895 38 1 7.0516 2.7651 3.8170 39 1 0.6213 3.6829 0.4481 40 1 1.2634 3.9096 2.0929 41 1 2.3637 3.9512 0.6944 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225841607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:11 Heat of formation + Delta-G solvation = -128.432526 kcal Electronic energy + Delta-G solvation = -22948.030734 eV Core-core repulsion = 19599.812999 eV Total energy + Delta-G solvation = -3348.217735 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85280 -39.59508 -38.44531 -37.28853 -35.32942 -34.39921 -31.44829 -30.64526 -29.42334 -28.01734 -27.45586 -26.81452 -24.33750 -22.67315 -22.61799 -21.67575 -19.67587 -18.44036 -17.73925 -17.37099 -17.15885 -16.80716 -16.52002 -16.29280 -16.00235 -15.36777 -15.07012 -14.98221 -14.76135 -14.44394 -14.07551 -13.83161 -13.54455 -13.29733 -13.12166 -12.89923 -12.70638 -12.48193 -12.42125 -12.19028 -12.13253 -11.99878 -11.87781 -11.67189 -11.50496 -11.43837 -11.02045 -10.42164 -10.33837 -9.34012 -8.77686 -8.60620 -6.38392 0.80601 1.04297 1.38056 1.48116 1.54410 2.19011 2.62308 2.71629 2.88701 3.19802 3.72723 3.86060 4.06251 4.20840 4.31515 4.43933 4.44531 4.50220 4.54455 4.54849 4.60091 4.63921 4.70521 4.74665 4.80270 4.87104 5.00356 5.05134 5.05854 5.16488 5.25091 5.30755 5.33469 5.51102 5.74650 5.90672 6.02589 6.10780 6.36484 6.49828 6.66831 6.80253 6.89939 7.37448 8.26516 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.008526 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.504950 B = 3283.464465 C = 5487.307993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.105 3.895 4 H 0.094 0.906 5 C 0.046 3.954 6 O -0.310 6.310 7 C -0.088 4.088 8 C 0.098 3.902 9 C -0.465 4.465 10 H 0.076 0.924 11 C 0.039 3.961 12 N -0.813 5.813 13 Si 0.978 3.022 14 H -0.259 1.259 15 H -0.262 1.262 16 H -0.260 1.260 17 C -0.204 4.204 18 C -0.078 4.078 19 C -0.316 4.316 20 C 0.125 3.875 21 O -0.337 6.337 22 C 0.025 3.975 23 O -0.394 6.394 24 C 0.026 3.974 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.027 0.973 31 H 0.037 0.963 32 H 0.292 0.708 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.054 0.946 37 H 0.116 0.884 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 6.138 1.331 9.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C 0.047 3.953 4 H 0.111 0.889 5 C -0.030 4.030 6 O -0.227 6.227 7 C -0.133 4.133 8 C 0.094 3.906 9 C -0.493 4.493 10 H 0.094 0.906 11 C -0.177 4.177 12 N -0.438 5.438 13 Si 0.798 3.202 14 H -0.183 1.183 15 H -0.186 1.186 16 H -0.184 1.184 17 C -0.224 4.224 18 C -0.096 4.096 19 C -0.336 4.336 20 C 0.080 3.920 21 O -0.251 6.251 22 C -0.070 4.070 23 O -0.313 6.313 24 C -0.070 4.070 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.931 5.979 1.449 9.267 hybrid contribution 0.703 -0.135 -0.701 1.002 sum -6.228 5.843 0.748 8.573 Atomic orbital electron populations 1.21674 0.93421 1.02229 1.02245 1.21464 0.97438 0.94230 1.02237 1.22233 0.90225 0.95287 0.87564 0.88864 1.23149 0.95215 0.93342 0.91270 1.86022 1.16821 1.69270 1.50542 1.18249 0.83289 0.99927 1.11886 1.17999 0.92856 0.90282 0.89427 1.19628 0.99743 1.19229 1.10743 0.90577 1.26768 0.94859 1.00281 0.95798 1.69879 1.18072 1.37152 1.18720 0.85254 0.79086 0.77017 0.78877 1.18314 1.18638 1.18406 1.20945 0.93865 1.02616 1.04944 1.20548 0.99010 0.94395 0.95660 1.20643 0.91917 1.07073 1.13978 1.19370 0.91750 0.87729 0.93135 1.86073 1.37045 1.40281 1.61726 1.23158 0.96039 0.92487 0.95288 1.87968 1.89159 1.21539 1.32612 1.22930 0.99717 0.80911 1.03466 0.92478 0.91550 0.91970 0.91149 0.93052 0.95477 0.94445 0.89760 0.87185 0.86190 0.85327 0.92729 0.86583 0.92662 0.92133 0.88708 0.94931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.85 71.98 0.71 -2.85 16 2 C -0.12 -3.94 5.35 30.60 0.16 -3.78 16 3 C 0.10 3.62 2.50 30.59 0.08 3.70 16 4 H 0.09 2.62 7.83 -2.39 -0.02 2.60 16 5 C 0.05 2.00 5.89 71.98 0.42 2.43 16 6 O -0.31 -15.95 8.34 -70.61 -0.59 -16.54 16 7 C -0.09 -4.75 5.77 23.15 0.13 -4.62 16 8 C 0.10 5.45 5.57 -21.21 -0.12 5.34 16 9 C -0.47 -25.34 8.71 23.40 0.20 -25.13 16 10 H 0.08 4.17 7.66 -2.91 -0.02 4.15 16 11 C 0.04 1.96 5.16 85.25 0.44 2.40 16 12 N -0.81 -41.44 10.94 21.83 0.24 -41.20 16 13 Si 0.98 37.70 29.59 68.60 2.03 39.73 16 14 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 15 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 16 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 17 C -0.20 -10.87 8.63 22.48 0.19 -10.67 16 18 C -0.08 -3.65 9.96 21.99 0.22 -3.43 16 19 C -0.32 -14.29 9.05 22.51 0.20 -14.09 16 20 C 0.13 6.18 6.69 22.53 0.15 6.33 16 21 O -0.34 -14.80 10.28 -79.79 -0.82 -15.62 16 22 C 0.02 0.76 9.81 113.37 1.11 1.87 16 23 O -0.39 -13.80 9.80 -144.34 -1.41 -15.22 16 24 C 0.03 0.67 10.79 113.37 1.22 1.89 16 25 H 0.06 1.48 7.73 -2.39 -0.02 1.46 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.05 2.05 7.74 -2.39 -0.02 2.03 16 30 H 0.03 1.18 7.71 -2.39 -0.02 1.16 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 33 H 0.11 5.98 6.18 -2.91 -0.02 5.96 16 34 H 0.12 4.81 8.06 -2.91 -0.02 4.78 16 35 H 0.13 4.87 6.27 -2.91 -0.02 4.85 16 36 H 0.05 1.55 7.65 -2.38 -0.02 1.53 16 37 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.05 1.58 7.66 -2.39 -0.02 1.56 16 39 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.03 0.87 7.71 -2.39 -0.02 0.85 16 Total: -1.00 -65.58 341.52 5.59 -59.99 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 1.00 Total: 29.48 kcal Atomic # 6 Polarization: -45.76 SS G_CDS: 5.14 Total: -40.63 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.24 Total: -41.20 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -2.82 Total: -47.38 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -65.58 5.59 -59.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.441 kcal (2) G-P(sol) polarization free energy of solvation -65.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds