Wall clock time and date at job start Tue Mar 31 2020 01:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.47088 * 2 1 4 4 H 1.08993 * 109.47043 * 56.27076 * 3 2 1 5 5 C 1.52997 * 109.46859 * 176.27275 * 3 2 1 6 6 O 1.42899 * 109.47800 * 54.99909 * 5 3 2 7 7 C 1.35739 * 117.00566 * 179.97438 * 6 5 3 8 8 C 1.41194 * 120.28503 * 89.99679 * 7 6 5 9 9 C 1.41178 * 120.26398 * 359.97438 * 8 7 6 10 10 H 1.08007 * 120.00259 * 25.30165 * 9 8 7 11 11 C 1.39928 * 119.99976 * 205.29912 * 9 8 7 12 12 N 1.30865 * 120.00163 * 14.57797 * 11 9 8 13 13 Si 1.86803 * 119.99778 * 194.57828 * 11 9 8 14 14 H 1.48498 * 109.47290 * 59.99981 * 13 11 9 15 15 H 1.48502 * 109.46818 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47124 * 299.99859 * 13 11 9 17 17 C 1.40766 * 119.46976 * 179.72356 * 8 7 6 18 18 C 1.36493 * 120.02571 * 0.25833 * 17 8 7 19 19 C 1.38771 * 120.57633 * 359.97438 * 18 17 8 20 20 C 1.38709 * 120.54205 * 0.02802 * 19 18 17 21 21 O 1.36005 * 120.02234 * 179.97438 * 20 19 18 22 22 C 1.42898 * 117.00196 * 0.02562 * 21 20 19 23 23 O 1.42900 * 109.46777 * 296.26679 * 3 2 1 24 24 C 1.42903 * 113.99453 * 150.92271 * 23 3 2 25 25 H 1.08999 * 109.47259 * 305.24702 * 1 2 3 26 26 H 1.09005 * 109.46734 * 65.24310 * 1 2 3 27 27 H 1.09000 * 109.46908 * 185.24087 * 1 2 3 28 28 H 1.08994 * 109.47548 * 240.00034 * 2 1 3 29 29 H 1.08998 * 109.47170 * 119.99517 * 2 1 3 30 30 H 1.09000 * 109.46981 * 294.99371 * 5 3 2 31 31 H 1.09007 * 109.46958 * 174.99799 * 5 3 2 32 32 H 0.96994 * 120.00213 * 179.97438 * 12 11 9 33 33 H 1.08001 * 119.98834 * 180.27656 * 17 8 7 34 34 H 1.07995 * 119.70985 * 180.02562 * 18 17 8 35 35 H 1.07998 * 119.72921 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.46516 * 299.99745 * 22 21 20 37 37 H 1.08993 * 109.47469 * 60.00014 * 22 21 20 38 38 H 1.09000 * 109.47262 * 179.97438 * 22 21 20 39 39 H 1.08993 * 109.47273 * 304.85077 * 24 23 3 40 40 H 1.09004 * 109.46769 * 64.85901 * 24 23 3 41 41 H 1.09007 * 109.46971 * 184.85238 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6231 1.9753 0.8546 5 6 3.5671 1.4436 0.0938 6 8 4.1098 0.6474 -0.9615 7 6 5.4618 0.5435 -1.0225 8 6 6.1280 -0.4942 -0.3347 9 6 5.3932 -1.4321 0.4226 10 1 4.3607 -1.6336 0.1780 11 6 6.0026 -2.1006 1.4901 12 7 7.1401 -1.6667 1.9702 13 14 5.1925 -3.6126 2.2298 14 1 5.0502 -4.6588 1.1856 15 1 6.0322 -4.1311 3.3395 16 1 3.8510 -3.2495 2.7529 17 6 7.5302 -0.5892 -0.4146 18 6 8.2357 0.3204 -1.1480 19 6 7.5829 1.3437 -1.8206 20 6 6.2021 1.4597 -1.7582 21 8 5.5732 2.4671 -2.4211 22 6 6.3968 3.3693 -3.1625 23 8 1.6366 2.0904 -1.2082 24 6 1.4534 3.5016 -1.0777 25 1 -0.3634 0.5931 0.8392 26 1 -0.3633 0.4304 -0.9333 27 1 -0.3633 -1.0234 0.0939 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.8723 1.0299 1.0549 31 1 3.9359 2.4654 0.0044 32 1 7.5623 -2.1299 2.7104 33 1 8.0479 -1.3822 0.1045 34 1 9.3113 0.2424 -1.2061 35 1 8.1547 2.0557 -2.3973 36 1 7.1002 3.8571 -2.4877 37 1 6.9473 2.8167 -3.9238 38 1 5.7710 4.1221 -3.6419 39 1 0.7458 3.7033 -0.2736 40 1 2.4092 3.9723 -0.8474 41 1 1.0654 3.9056 -2.0129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225841608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:15 Heat of formation + Delta-G solvation = -111.817112 kcal Electronic energy + Delta-G solvation = -22953.477145 eV Core-core repulsion = 19605.979909 eV Total energy + Delta-G solvation = -3347.497236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.08921 -38.13370 -36.75361 -35.49926 -33.47367 -33.08493 -29.61800 -28.95439 -27.88713 -26.42599 -26.22920 -25.00722 -22.95324 -20.90317 -20.80926 -20.16466 -17.86614 -16.78816 -16.01549 -15.65947 -15.50364 -15.29684 -14.90713 -14.75003 -14.60345 -13.74376 -13.56923 -13.36707 -13.22732 -13.07454 -12.42372 -12.31983 -12.00860 -11.77518 -11.48683 -11.32556 -11.17632 -11.08753 -10.88106 -10.70501 -10.65651 -10.50017 -10.30391 -10.17738 -9.91852 -9.63298 -9.20230 -9.01098 -8.51151 -7.42213 -6.92190 -6.73689 -4.43658 2.65140 2.92015 3.02951 3.06383 3.18827 3.86623 4.16721 4.27458 4.52941 4.89172 5.21169 5.40301 5.51336 5.54323 5.63615 5.65949 5.67299 5.72657 5.85076 5.87863 5.90178 6.00710 6.11192 6.19777 6.31806 6.38017 6.43731 6.50852 6.56071 6.82307 6.85097 6.95481 7.11863 7.21401 7.61257 7.67223 7.75602 7.93461 8.04401 8.41594 8.45298 8.72819 8.80691 9.24364 10.08682 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.011420 B = 0.008540 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.184981 B = 3278.002547 C = 5484.722176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.098 3.902 4 H 0.062 0.938 5 C 0.043 3.957 6 O -0.295 6.295 7 C -0.061 4.061 8 C 0.125 3.875 9 C -0.437 4.437 10 H 0.087 0.913 11 C 0.073 3.927 12 N -0.789 5.789 13 Si 0.911 3.089 14 H -0.261 1.261 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.179 4.179 18 C -0.078 4.078 19 C -0.319 4.319 20 C 0.133 3.867 21 O -0.318 6.318 22 C 0.035 3.965 23 O -0.370 6.370 24 C 0.033 3.967 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.282 0.718 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.033 0.967 40 H 0.038 0.962 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.061 5.413 -1.158 8.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.040 3.960 4 H 0.080 0.920 5 C -0.033 4.033 6 O -0.211 6.211 7 C -0.107 4.107 8 C 0.122 3.878 9 C -0.466 4.466 10 H 0.105 0.895 11 C -0.145 4.145 12 N -0.414 5.414 13 Si 0.735 3.265 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.188 1.188 17 C -0.198 4.198 18 C -0.097 4.097 19 C -0.339 4.339 20 C 0.088 3.912 21 O -0.232 6.232 22 C -0.061 4.061 23 O -0.289 6.289 24 C -0.064 4.064 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.142 0.858 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.255 5.220 -1.253 8.243 hybrid contribution 0.426 -0.061 0.804 0.912 sum -5.829 5.159 -0.449 7.797 Atomic orbital electron populations 1.21737 0.96328 1.00937 1.01431 1.21507 0.94978 0.94872 1.04088 1.22282 0.92765 0.94284 0.86635 0.92032 1.23027 0.92880 0.94725 0.92619 1.86083 1.17476 1.69028 1.48525 1.17937 0.82795 0.98933 1.11019 1.17647 0.91946 0.89638 0.88576 1.19525 0.99335 1.17255 1.10441 0.89478 1.26003 0.94496 0.97735 0.96277 1.69833 1.15419 1.35989 1.20127 0.86311 0.80000 0.81364 0.78833 1.18578 1.20314 1.18778 1.21001 0.94195 1.01488 1.03153 1.20229 0.97525 0.95088 0.96856 1.20308 0.92183 1.06729 1.14667 1.19235 0.91050 0.87180 0.93701 1.86107 1.35501 1.39038 1.62548 1.22776 0.95689 0.92542 0.95119 1.87992 1.88549 1.19002 1.33338 1.22704 0.99420 0.83019 1.01280 0.93689 0.92425 0.93067 0.89744 0.90613 0.92723 0.94751 0.90666 0.85810 0.89106 0.88553 0.93818 0.93639 0.89926 0.94862 0.94307 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.74 37.16 0.36 -1.66 16 2 C -0.12 -1.97 5.39 -26.73 -0.14 -2.12 16 3 C 0.10 1.71 2.52 -26.73 -0.07 1.64 16 4 H 0.06 0.92 7.73 -51.93 -0.40 0.52 16 5 C 0.04 0.91 5.88 37.16 0.22 1.13 16 6 O -0.29 -7.27 8.30 -39.92 -0.33 -7.60 16 7 C -0.06 -1.59 5.77 -38.22 -0.22 -1.81 16 8 C 0.13 3.36 5.58 -106.70 -0.60 2.76 16 9 C -0.44 -11.37 8.73 -37.83 -0.33 -11.70 16 10 H 0.09 2.24 7.64 -52.48 -0.40 1.84 16 11 C 0.07 1.79 5.20 -17.33 -0.09 1.70 16 12 N -0.79 -19.69 10.83 55.55 0.60 -19.09 16 13 Si 0.91 18.26 29.58 -169.99 -5.03 13.23 16 14 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 15 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 16 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 17 C -0.18 -4.63 8.63 -39.26 -0.34 -4.97 16 18 C -0.08 -1.85 9.96 -40.01 -0.40 -2.25 16 19 C -0.32 -7.36 9.05 -39.21 -0.35 -7.71 16 20 C 0.13 3.25 6.69 -39.17 -0.26 2.99 16 21 O -0.32 -7.08 10.28 -34.29 -0.35 -7.43 16 22 C 0.03 0.57 9.81 101.05 0.99 1.56 16 23 O -0.37 -6.63 9.89 -40.08 -0.40 -7.02 16 24 C 0.03 0.45 10.87 101.05 1.10 1.55 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.62 7.69 -51.93 -0.40 1.22 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.03 0.73 7.80 -51.93 -0.40 0.32 16 32 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 33 H 0.12 3.25 6.11 -52.49 -0.32 2.93 16 34 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.10 1.95 6.27 -52.49 -0.33 1.62 16 36 H 0.04 0.68 7.66 -51.93 -0.40 0.28 16 37 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.03 0.39 7.97 -51.93 -0.41 -0.03 16 40 H 0.04 0.55 7.80 -51.93 -0.40 0.15 16 41 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -29.15 341.48 -6.87 -36.01 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.38 Total: 5.63 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -0.13 Total: -18.88 kcal Atomic # 7 Polarization: -19.69 SS G_CDS: 0.60 Total: -19.09 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -1.08 Total: -22.05 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.15 -6.87 -36.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.802 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds