Wall clock time and date at job start Tue Mar 31 2020 01:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.47088 * 2 1 4 4 H 1.08993 * 109.47043 * 56.27076 * 3 2 1 5 5 C 1.52997 * 109.46859 * 176.27275 * 3 2 1 6 6 O 1.42899 * 109.47800 * 54.99909 * 5 3 2 7 7 C 1.35739 * 117.00566 * 179.97438 * 6 5 3 8 8 C 1.41194 * 120.28503 * 89.99679 * 7 6 5 9 9 C 1.41178 * 120.26398 * 359.97438 * 8 7 6 10 10 H 1.08007 * 120.00259 * 25.30165 * 9 8 7 11 11 C 1.39928 * 119.99976 * 205.29912 * 9 8 7 12 12 N 1.30865 * 120.00163 * 14.57797 * 11 9 8 13 13 Si 1.86803 * 119.99778 * 194.57828 * 11 9 8 14 14 H 1.48498 * 109.47290 * 59.99981 * 13 11 9 15 15 H 1.48502 * 109.46818 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47124 * 299.99859 * 13 11 9 17 17 C 1.40766 * 119.46976 * 179.72356 * 8 7 6 18 18 C 1.36493 * 120.02571 * 0.25833 * 17 8 7 19 19 C 1.38771 * 120.57633 * 359.97438 * 18 17 8 20 20 C 1.38709 * 120.54205 * 0.02802 * 19 18 17 21 21 O 1.36005 * 120.02234 * 179.97438 * 20 19 18 22 22 C 1.42898 * 117.00196 * 0.02562 * 21 20 19 23 23 O 1.42900 * 109.46777 * 296.26679 * 3 2 1 24 24 C 1.42903 * 113.99453 * 150.92271 * 23 3 2 25 25 H 1.08999 * 109.47259 * 305.24702 * 1 2 3 26 26 H 1.09005 * 109.46734 * 65.24310 * 1 2 3 27 27 H 1.09000 * 109.46908 * 185.24087 * 1 2 3 28 28 H 1.08994 * 109.47548 * 240.00034 * 2 1 3 29 29 H 1.08998 * 109.47170 * 119.99517 * 2 1 3 30 30 H 1.09000 * 109.46981 * 294.99371 * 5 3 2 31 31 H 1.09007 * 109.46958 * 174.99799 * 5 3 2 32 32 H 0.96994 * 120.00213 * 179.97438 * 12 11 9 33 33 H 1.08001 * 119.98834 * 180.27656 * 17 8 7 34 34 H 1.07995 * 119.70985 * 180.02562 * 18 17 8 35 35 H 1.07998 * 119.72921 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.46516 * 299.99745 * 22 21 20 37 37 H 1.08993 * 109.47469 * 60.00014 * 22 21 20 38 38 H 1.09000 * 109.47262 * 179.97438 * 22 21 20 39 39 H 1.08993 * 109.47273 * 304.85077 * 24 23 3 40 40 H 1.09004 * 109.46769 * 64.85901 * 24 23 3 41 41 H 1.09007 * 109.46971 * 184.85238 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6231 1.9753 0.8546 5 6 3.5671 1.4436 0.0938 6 8 4.1098 0.6474 -0.9615 7 6 5.4618 0.5435 -1.0225 8 6 6.1280 -0.4942 -0.3347 9 6 5.3932 -1.4321 0.4226 10 1 4.3607 -1.6336 0.1780 11 6 6.0026 -2.1006 1.4901 12 7 7.1401 -1.6667 1.9702 13 14 5.1925 -3.6126 2.2298 14 1 5.0502 -4.6588 1.1856 15 1 6.0322 -4.1311 3.3395 16 1 3.8510 -3.2495 2.7529 17 6 7.5302 -0.5892 -0.4146 18 6 8.2357 0.3204 -1.1480 19 6 7.5829 1.3437 -1.8206 20 6 6.2021 1.4597 -1.7582 21 8 5.5732 2.4671 -2.4211 22 6 6.3968 3.3693 -3.1625 23 8 1.6366 2.0904 -1.2082 24 6 1.4534 3.5016 -1.0777 25 1 -0.3634 0.5931 0.8392 26 1 -0.3633 0.4304 -0.9333 27 1 -0.3633 -1.0234 0.0939 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.8723 1.0299 1.0549 31 1 3.9359 2.4654 0.0044 32 1 7.5623 -2.1299 2.7104 33 1 8.0479 -1.3822 0.1045 34 1 9.3113 0.2424 -1.2061 35 1 8.1547 2.0557 -2.3973 36 1 7.1002 3.8571 -2.4877 37 1 6.9473 2.8167 -3.9238 38 1 5.7710 4.1221 -3.6419 39 1 0.7458 3.7033 -0.2736 40 1 2.4092 3.9723 -0.8474 41 1 1.0654 3.9056 -2.0129 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225841608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:14 Heat of formation + Delta-G solvation = -128.123006 kcal Electronic energy + Delta-G solvation = -22954.184222 eV Core-core repulsion = 19605.979909 eV Total energy + Delta-G solvation = -3348.204313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85557 -39.59461 -38.44681 -37.28986 -35.32601 -34.40094 -31.44360 -30.63912 -29.42288 -28.01917 -27.45436 -26.81629 -24.34281 -22.66887 -22.61866 -21.68271 -19.67650 -18.44057 -17.73765 -17.37265 -17.15768 -16.80653 -16.52096 -16.28896 -16.00599 -15.36593 -15.07122 -14.98192 -14.75800 -14.44879 -14.07869 -13.82290 -13.52845 -13.29083 -13.10793 -12.91103 -12.70172 -12.48651 -12.41928 -12.18452 -12.12513 -12.00203 -11.87916 -11.67563 -11.51648 -11.43235 -11.02852 -10.42321 -10.34078 -9.33843 -8.77170 -8.59231 -6.38935 0.80697 1.04866 1.37997 1.48885 1.53341 2.18837 2.62934 2.71652 2.88620 3.20276 3.72783 3.85731 4.06580 4.20996 4.31509 4.43819 4.44977 4.50119 4.52624 4.56218 4.59983 4.63563 4.70234 4.74331 4.79893 4.87495 5.01129 5.05081 5.05808 5.16303 5.25496 5.31255 5.33741 5.50704 5.74789 5.90753 6.02937 6.11192 6.36576 6.50184 6.66791 6.80523 6.90006 7.37317 8.27182 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.011420 B = 0.008540 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.184981 B = 3278.002547 C = 5484.722176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C 0.105 3.895 4 H 0.094 0.906 5 C 0.046 3.954 6 O -0.310 6.310 7 C -0.087 4.087 8 C 0.097 3.903 9 C -0.465 4.465 10 H 0.076 0.924 11 C 0.038 3.962 12 N -0.815 5.815 13 Si 0.979 3.021 14 H -0.261 1.261 15 H -0.264 1.264 16 H -0.257 1.257 17 C -0.204 4.204 18 C -0.078 4.078 19 C -0.316 4.316 20 C 0.125 3.875 21 O -0.337 6.337 22 C 0.025 3.975 23 O -0.393 6.393 24 C 0.026 3.974 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.027 0.973 32 H 0.291 0.709 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.116 0.884 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.902 6.206 -1.042 9.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C 0.047 3.953 4 H 0.112 0.888 5 C -0.030 4.030 6 O -0.227 6.227 7 C -0.133 4.133 8 C 0.094 3.906 9 C -0.493 4.493 10 H 0.094 0.906 11 C -0.178 4.178 12 N -0.440 5.440 13 Si 0.799 3.201 14 H -0.185 1.185 15 H -0.188 1.188 16 H -0.181 1.181 17 C -0.224 4.224 18 C -0.097 4.097 19 C -0.336 4.336 20 C 0.080 3.920 21 O -0.251 6.251 22 C -0.070 4.070 23 O -0.312 6.312 24 C -0.070 4.070 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.087 6.046 -1.153 9.386 hybrid contribution 0.725 -0.132 0.671 0.997 sum -6.362 5.913 -0.482 8.699 Atomic orbital electron populations 1.21656 0.93406 1.02175 1.02183 1.21465 0.97474 0.94221 1.02231 1.22273 0.90019 0.95141 0.87879 0.88846 1.23155 0.95495 0.93460 0.90917 1.86020 1.17092 1.69852 1.49690 1.18256 0.83530 0.99628 1.11871 1.18008 0.92783 0.90413 0.89446 1.19615 0.99141 1.18747 1.11800 0.90562 1.26778 0.94957 1.00088 0.95990 1.69868 1.16437 1.37086 1.20584 0.85291 0.79338 0.77260 0.78201 1.18548 1.18765 1.18074 1.21002 0.94130 1.02479 1.04741 1.20556 0.99006 0.94374 0.95747 1.20647 0.91929 1.06824 1.14169 1.19368 0.91582 0.87566 0.93529 1.86070 1.37191 1.39110 1.62759 1.23156 0.96434 0.92287 0.95090 1.87964 1.88351 1.21210 1.33694 1.22936 0.99794 0.80877 1.03411 0.91614 0.92630 0.91897 0.93007 0.91162 0.94467 0.95471 0.89784 0.86941 0.86204 0.85343 0.92734 0.92663 0.86587 0.92121 0.95205 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.74 71.98 0.70 -2.83 16 2 C -0.12 -3.95 5.39 30.60 0.16 -3.79 16 3 C 0.10 3.61 2.52 30.60 0.08 3.69 16 4 H 0.09 2.61 7.73 -2.39 -0.02 2.60 16 5 C 0.05 1.98 5.88 71.98 0.42 2.40 16 6 O -0.31 -15.94 8.30 -70.55 -0.59 -16.53 16 7 C -0.09 -4.72 5.77 23.15 0.13 -4.58 16 8 C 0.10 5.41 5.58 -21.21 -0.12 5.29 16 9 C -0.46 -25.31 8.73 23.40 0.20 -25.10 16 10 H 0.08 4.16 7.64 -2.91 -0.02 4.14 16 11 C 0.04 1.89 5.20 85.25 0.44 2.34 16 12 N -0.81 -41.56 10.83 21.83 0.24 -41.32 16 13 Si 0.98 37.73 29.58 68.60 2.03 39.76 16 14 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 15 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 16 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 17 C -0.20 -10.87 8.63 22.48 0.19 -10.68 16 18 C -0.08 -3.69 9.96 21.99 0.22 -3.47 16 19 C -0.32 -14.29 9.05 22.51 0.20 -14.09 16 20 C 0.12 6.15 6.69 22.54 0.15 6.30 16 21 O -0.34 -14.81 10.28 -79.70 -0.82 -15.63 16 22 C 0.02 0.76 9.81 113.37 1.11 1.88 16 23 O -0.39 -13.77 9.89 -144.34 -1.43 -15.19 16 24 C 0.03 0.67 10.87 113.37 1.23 1.90 16 25 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.45 7.93 -2.38 -0.02 1.43 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 2.07 7.69 -2.39 -0.02 2.05 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.03 1.19 7.80 -2.38 -0.02 1.17 16 32 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 33 H 0.11 6.13 6.11 -2.91 -0.02 6.11 16 34 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 35 H 0.13 4.87 6.27 -2.91 -0.02 4.85 16 36 H 0.05 1.55 7.66 -2.39 -0.02 1.53 16 37 H 0.05 1.58 7.66 -2.39 -0.02 1.56 16 38 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.06 1.23 7.97 -2.39 -0.02 1.21 16 40 H 0.03 0.81 7.80 -2.39 -0.02 0.79 16 41 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -65.52 341.48 5.58 -59.94 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 1.00 Total: 29.71 kcal Atomic # 6 Polarization: -45.88 SS G_CDS: 5.14 Total: -40.74 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.24 Total: -41.32 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -2.83 Total: -47.35 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -65.52 5.58 -59.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.186 kcal (2) G-P(sol) polarization free energy of solvation -65.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds