Wall clock time and date at job start Tue Mar 31 2020 01:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42893 * 109.47639 * 2 1 4 4 C 1.42899 * 114.00677 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47461 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47146 * 185.00455 * 5 4 3 7 7 C 1.53007 * 109.47223 * 304.99838 * 5 4 3 8 8 O 1.42897 * 109.47496 * 64.99968 * 5 4 3 9 9 C 1.35743 * 117.00313 * 149.99595 * 8 5 4 10 10 C 1.41194 * 120.27970 * 90.00182 * 9 8 5 11 11 C 1.41179 * 120.26617 * 359.97438 * 10 9 8 12 12 H 1.07999 * 120.00175 * 25.11185 * 11 10 9 13 13 C 1.39921 * 119.99913 * 205.11065 * 11 10 9 14 14 N 1.30872 * 120.00044 * 17.40652 * 13 11 10 15 15 Si 1.86799 * 119.99959 * 197.41005 * 13 11 10 16 16 H 1.48504 * 109.46900 * 90.00185 * 15 13 11 17 17 H 1.48502 * 109.47182 * 209.99764 * 15 13 11 18 18 H 1.48499 * 109.47168 * 330.00213 * 15 13 11 19 19 C 1.40768 * 119.46842 * 180.02562 * 10 9 8 20 20 C 1.36486 * 120.02375 * 359.97438 * 19 10 9 21 21 C 1.38770 * 120.58234 * 0.02562 * 20 19 10 22 22 C 1.38708 * 120.53684 * 359.72267 * 21 20 19 23 23 O 1.36010 * 120.02428 * 180.28298 * 22 21 20 24 24 C 1.42895 * 116.99846 * 0.25312 * 23 22 21 25 25 H 1.08998 * 109.46911 * 59.99734 * 1 2 3 26 26 H 1.09000 * 109.47195 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46683 * 300.00124 * 1 2 3 28 28 H 1.09003 * 109.47115 * 240.00149 * 2 1 3 29 29 H 1.09007 * 109.47070 * 120.00484 * 2 1 3 30 30 H 1.09005 * 109.46550 * 59.99934 * 4 3 2 31 31 H 1.09006 * 109.47002 * 300.00531 * 4 3 2 32 32 H 1.09005 * 109.46508 * 59.99867 * 7 5 4 33 33 H 1.08996 * 109.47122 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.46925 * 300.00297 * 7 5 4 35 35 H 0.96999 * 120.00127 * 180.02562 * 14 13 11 36 36 H 1.08005 * 119.99060 * 180.02562 * 19 10 9 37 37 H 1.08006 * 119.70972 * 180.02562 * 20 19 10 38 38 H 1.08006 * 119.73331 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47308 * 60.00195 * 24 23 22 40 40 H 1.09004 * 109.47223 * 179.97438 * 24 23 22 41 41 H 1.08994 * 109.46926 * 299.99677 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9382 0.0012 6 1 4.9083 3.0253 -0.0880 7 6 3.1581 3.6448 -1.1806 8 8 3.3978 3.5450 1.2222 9 6 4.1401 4.5814 1.6885 10 6 3.8363 5.9051 1.3026 11 6 2.7582 6.1617 0.4280 12 1 1.9353 5.4650 0.3664 13 6 2.7558 7.3186 -0.3589 14 7 3.8678 7.9813 -0.5516 15 14 1.1654 7.9174 -1.1345 16 1 0.4805 8.8491 -0.2027 17 1 1.4693 8.6229 -2.4054 18 1 0.2820 6.7563 -1.4117 19 6 4.6178 6.9669 1.7960 20 6 5.6593 6.7132 2.6409 21 6 5.9592 5.4128 3.0212 22 6 5.2017 4.3492 2.5534 23 8 5.5014 3.0793 2.9374 24 6 6.6061 2.9148 3.8287 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8340 0.9763 -0.8892 31 1 3.8334 0.9765 0.8908 32 1 2.0752 3.5576 -1.0914 33 1 3.4388 4.6979 -1.1799 34 1 3.4844 3.1819 -2.1119 35 1 3.8661 8.7835 -1.0969 36 1 4.3926 7.9829 1.5067 37 1 6.2552 7.5318 3.0168 38 1 6.7862 5.2277 3.6908 39 1 6.4131 3.4619 4.7514 40 1 6.7361 1.8564 4.0547 41 1 7.5115 3.3004 3.3601 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225842424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:26 Heat of formation + Delta-G solvation = -110.231998 kcal Electronic energy + Delta-G solvation = -22873.163523 eV Core-core repulsion = 19525.735022 eV Total energy + Delta-G solvation = -3347.428500 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.12651 -37.93118 -36.89016 -35.67261 -33.49700 -32.00643 -30.16524 -29.41643 -28.31050 -26.49663 -25.66601 -24.97718 -22.56110 -21.32687 -20.77864 -19.92911 -17.82167 -16.86128 -16.06450 -15.77752 -15.48638 -15.41288 -15.05872 -14.74411 -14.55251 -13.73797 -13.37766 -13.27247 -12.99787 -12.77436 -12.43676 -12.05238 -11.92039 -11.73621 -11.59339 -11.36674 -11.21187 -11.03988 -11.00790 -10.79842 -10.58850 -10.44332 -10.21899 -10.09114 -9.84209 -9.49834 -9.21125 -9.12466 -8.50122 -7.40680 -6.92205 -6.74881 -4.38016 2.65691 2.91495 3.07044 3.12678 3.20152 3.90315 4.07271 4.24250 4.51720 4.87486 5.19839 5.33101 5.49768 5.58232 5.63276 5.64578 5.70589 5.71582 5.77032 5.87195 5.99405 6.05930 6.16916 6.19989 6.24975 6.34328 6.40459 6.63130 6.84601 6.93895 6.98797 7.12694 7.23992 7.39815 7.61071 7.64833 7.76462 7.94805 8.05563 8.42416 8.47611 8.74838 8.82644 9.26257 10.08899 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.010907 B = 0.008257 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.593360 B = 3390.268023 C = 5576.405162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.370 6.370 4 C 0.071 3.929 5 C 0.096 3.904 6 H 0.059 0.941 7 C -0.171 4.171 8 O -0.296 6.296 9 C -0.062 4.062 10 C 0.126 3.874 11 C -0.430 4.430 12 H 0.092 0.908 13 C 0.074 3.926 14 N -0.785 5.785 15 Si 0.907 3.093 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.257 1.257 19 C -0.180 4.180 20 C -0.078 4.078 21 C -0.320 4.320 22 C 0.132 3.868 23 O -0.322 6.322 24 C 0.035 3.965 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.036 0.964 35 H 0.282 0.718 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 -8.754 0.017 8.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.289 6.289 4 C -0.006 4.006 5 C 0.040 3.960 6 H 0.077 0.923 7 C -0.228 4.228 8 O -0.212 6.212 9 C -0.108 4.108 10 C 0.123 3.877 11 C -0.458 4.458 12 H 0.110 0.890 13 C -0.145 4.145 14 N -0.410 5.410 15 Si 0.731 3.269 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.181 1.181 19 C -0.199 4.199 20 C -0.096 4.096 21 C -0.340 4.340 22 C 0.087 3.913 23 O -0.236 6.236 24 C -0.061 4.061 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.198 -8.645 -0.105 8.648 hybrid contribution 0.175 0.288 -0.351 0.486 sum -0.022 -8.358 -0.455 8.370 Atomic orbital electron populations 1.21712 0.94172 1.01510 1.03272 1.22385 0.95442 0.85053 0.99290 1.88030 1.21031 1.24680 1.95176 1.22653 0.81447 0.97114 0.99383 1.22171 0.96931 0.89737 0.87204 0.92340 1.22401 1.01921 1.03143 0.95361 1.86142 1.51424 1.46349 1.37322 1.17932 0.98752 0.87271 1.06827 1.17645 0.91430 0.88871 0.89758 1.19610 1.04547 1.04065 1.17612 0.89009 1.25993 0.97390 0.95550 0.95532 1.69860 1.27055 1.14726 1.29321 0.86311 0.82201 0.79862 0.78559 1.19145 1.20301 1.18113 1.20947 0.98803 0.99476 1.00670 1.20211 0.97370 0.94523 0.97529 1.20277 1.06615 0.93186 1.13938 1.19208 0.93930 0.82082 0.96035 1.86061 1.48637 1.26658 1.62282 1.22777 0.89010 1.01329 0.92998 0.92000 0.91726 0.91724 0.94200 0.93907 0.93270 0.93119 0.91867 0.89366 0.94465 0.90699 0.86095 0.89144 0.88571 0.93611 0.89938 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 37.16 0.38 -1.42 16 2 C 0.06 0.76 6.66 37.16 0.25 1.01 16 3 O -0.37 -6.81 9.43 -40.08 -0.38 -7.18 16 4 C 0.07 1.26 5.81 37.16 0.22 1.48 16 5 C 0.10 2.04 3.19 -26.73 -0.09 1.96 16 6 H 0.06 1.26 7.91 -51.93 -0.41 0.85 16 7 C -0.17 -3.58 8.20 37.16 0.30 -3.27 16 8 O -0.30 -7.38 8.83 -39.93 -0.35 -7.73 16 9 C -0.06 -1.61 5.61 -38.22 -0.21 -1.82 16 10 C 0.13 3.36 5.56 -106.70 -0.59 2.77 16 11 C -0.43 -11.17 5.84 -37.84 -0.22 -11.39 16 12 H 0.09 2.43 7.16 -52.49 -0.38 2.06 16 13 C 0.07 1.81 5.14 -17.33 -0.09 1.72 16 14 N -0.79 -19.47 10.97 55.55 0.61 -18.86 16 15 Si 0.91 18.53 29.59 -169.99 -5.03 13.49 16 16 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 19 C -0.18 -4.61 8.63 -39.26 -0.34 -4.95 16 20 C -0.08 -1.82 9.96 -40.02 -0.40 -2.22 16 21 C -0.32 -7.29 9.05 -39.21 -0.35 -7.65 16 22 C 0.13 3.18 6.69 -39.17 -0.26 2.91 16 23 O -0.32 -6.96 10.28 -34.31 -0.35 -7.32 16 24 C 0.03 0.55 9.81 101.05 0.99 1.55 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.36 7.56 -51.93 -0.39 0.97 16 33 H 0.09 2.08 5.75 -51.93 -0.30 1.78 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 36 H 0.12 3.15 6.18 -52.48 -0.32 2.83 16 37 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 38 H 0.10 1.92 6.27 -52.48 -0.33 1.59 16 39 H 0.05 0.70 7.67 -51.93 -0.40 0.30 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -28.82 336.63 -7.14 -35.96 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.29 Total: 5.89 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -0.42 Total: -19.32 kcal Atomic # 7 Polarization: -19.47 SS G_CDS: 0.61 Total: -18.86 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -1.08 Total: -22.23 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.82 -7.14 -35.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.272 kcal (2) G-P(sol) polarization free energy of solvation -28.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds