Wall clock time and date at job start Tue Mar 31 2020 01:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42893 * 109.47639 * 2 1 4 4 C 1.42899 * 114.00677 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47461 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47146 * 185.00455 * 5 4 3 7 7 C 1.53007 * 109.47223 * 304.99838 * 5 4 3 8 8 O 1.42897 * 109.47496 * 64.99968 * 5 4 3 9 9 C 1.35743 * 117.00313 * 149.99595 * 8 5 4 10 10 C 1.41194 * 120.27970 * 90.00182 * 9 8 5 11 11 C 1.41179 * 120.26617 * 359.97438 * 10 9 8 12 12 H 1.07999 * 120.00175 * 25.11185 * 11 10 9 13 13 C 1.39921 * 119.99913 * 205.11065 * 11 10 9 14 14 N 1.30872 * 120.00044 * 17.40652 * 13 11 10 15 15 Si 1.86799 * 119.99959 * 197.41005 * 13 11 10 16 16 H 1.48504 * 109.46900 * 90.00185 * 15 13 11 17 17 H 1.48502 * 109.47182 * 209.99764 * 15 13 11 18 18 H 1.48499 * 109.47168 * 330.00213 * 15 13 11 19 19 C 1.40768 * 119.46842 * 180.02562 * 10 9 8 20 20 C 1.36486 * 120.02375 * 359.97438 * 19 10 9 21 21 C 1.38770 * 120.58234 * 0.02562 * 20 19 10 22 22 C 1.38708 * 120.53684 * 359.72267 * 21 20 19 23 23 O 1.36010 * 120.02428 * 180.28298 * 22 21 20 24 24 C 1.42895 * 116.99846 * 0.25312 * 23 22 21 25 25 H 1.08998 * 109.46911 * 59.99734 * 1 2 3 26 26 H 1.09000 * 109.47195 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46683 * 300.00124 * 1 2 3 28 28 H 1.09003 * 109.47115 * 240.00149 * 2 1 3 29 29 H 1.09007 * 109.47070 * 120.00484 * 2 1 3 30 30 H 1.09005 * 109.46550 * 59.99934 * 4 3 2 31 31 H 1.09006 * 109.47002 * 300.00531 * 4 3 2 32 32 H 1.09005 * 109.46508 * 59.99867 * 7 5 4 33 33 H 1.08996 * 109.47122 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.46925 * 300.00297 * 7 5 4 35 35 H 0.96999 * 120.00127 * 180.02562 * 14 13 11 36 36 H 1.08005 * 119.99060 * 180.02562 * 19 10 9 37 37 H 1.08006 * 119.70972 * 180.02562 * 20 19 10 38 38 H 1.08006 * 119.73331 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47308 * 60.00195 * 24 23 22 40 40 H 1.09004 * 109.47223 * 179.97438 * 24 23 22 41 41 H 1.08994 * 109.46926 * 299.99677 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9382 0.0012 6 1 4.9083 3.0253 -0.0880 7 6 3.1581 3.6448 -1.1806 8 8 3.3978 3.5450 1.2222 9 6 4.1401 4.5814 1.6885 10 6 3.8363 5.9051 1.3026 11 6 2.7582 6.1617 0.4280 12 1 1.9353 5.4650 0.3664 13 6 2.7558 7.3186 -0.3589 14 7 3.8678 7.9813 -0.5516 15 14 1.1654 7.9174 -1.1345 16 1 0.4805 8.8491 -0.2027 17 1 1.4693 8.6229 -2.4054 18 1 0.2820 6.7563 -1.4117 19 6 4.6178 6.9669 1.7960 20 6 5.6593 6.7132 2.6409 21 6 5.9592 5.4128 3.0212 22 6 5.2017 4.3492 2.5534 23 8 5.5014 3.0793 2.9374 24 6 6.6061 2.9148 3.8287 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8340 0.9763 -0.8892 31 1 3.8334 0.9765 0.8908 32 1 2.0752 3.5576 -1.0914 33 1 3.4388 4.6979 -1.1799 34 1 3.4844 3.1819 -2.1119 35 1 3.8661 8.7835 -1.0969 36 1 4.3926 7.9829 1.5067 37 1 6.2552 7.5318 3.0168 38 1 6.7862 5.2277 3.6908 39 1 6.4131 3.4619 4.7514 40 1 6.7361 1.8564 4.0547 41 1 7.5115 3.3004 3.3601 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225842424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:25 Heat of formation + Delta-G solvation = -126.267849 kcal Electronic energy + Delta-G solvation = -22873.858889 eV Core-core repulsion = 19525.735022 eV Total energy + Delta-G solvation = -3348.123867 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87782 -39.40860 -38.47466 -37.43587 -35.34063 -33.45182 -31.47046 -31.28709 -30.01313 -28.05407 -27.17561 -26.79904 -23.61679 -23.07648 -22.59215 -21.64300 -19.60539 -18.53866 -17.66486 -17.30584 -17.10533 -16.93412 -16.57753 -16.42849 -16.04038 -15.35244 -15.04014 -14.88408 -14.55455 -14.16939 -13.84769 -13.59764 -13.44991 -13.30544 -13.14613 -12.97465 -12.72781 -12.53775 -12.36665 -12.27655 -12.16513 -12.04002 -11.85878 -11.78639 -11.56933 -11.27576 -10.94938 -10.47420 -10.30079 -9.30112 -8.75494 -8.58331 -6.31207 0.82974 1.06512 1.38097 1.50088 1.51337 2.20038 2.64830 2.72521 2.83598 3.13913 3.74425 4.09326 4.18030 4.23410 4.33942 4.38022 4.43434 4.46787 4.49714 4.53056 4.53492 4.61000 4.74174 4.79483 4.87083 4.96340 5.03577 5.06685 5.08461 5.22836 5.28878 5.29374 5.39051 5.64863 5.77697 5.94072 6.06398 6.14363 6.38194 6.53942 6.69828 6.84039 6.93483 7.41879 8.27921 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.010907 B = 0.008257 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.593360 B = 3390.268023 C = 5576.405162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.402 6.402 4 C 0.079 3.921 5 C 0.091 3.909 6 H 0.050 0.950 7 C -0.158 4.158 8 O -0.316 6.316 9 C -0.086 4.086 10 C 0.099 3.901 11 C -0.451 4.451 12 H 0.073 0.927 13 C 0.043 3.957 14 N -0.809 5.809 15 Si 0.970 3.030 16 H -0.261 1.261 17 H -0.263 1.263 18 H -0.263 1.263 19 C -0.205 4.205 20 C -0.078 4.078 21 C -0.317 4.317 22 C 0.126 3.874 23 O -0.338 6.338 24 C 0.025 3.975 25 H 0.056 0.944 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.291 0.709 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 -10.047 -0.016 10.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.322 6.322 4 C 0.003 3.997 5 C 0.034 3.966 6 H 0.068 0.932 7 C -0.216 4.216 8 O -0.233 6.233 9 C -0.131 4.131 10 C 0.096 3.904 11 C -0.479 4.479 12 H 0.091 0.909 13 C -0.174 4.174 14 N -0.434 5.434 15 Si 0.791 3.209 16 H -0.185 1.185 17 H -0.187 1.187 18 H -0.187 1.187 19 C -0.224 4.224 20 C -0.096 4.096 21 C -0.336 4.336 22 C 0.081 3.919 23 O -0.253 6.253 24 C -0.070 4.070 25 H 0.075 0.925 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.073 0.927 40 H 0.135 0.865 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.300 -9.952 -0.125 9.958 hybrid contribution 0.119 0.551 -0.268 0.624 sum 0.419 -9.401 -0.393 9.419 Atomic orbital electron populations 1.21746 0.93113 1.03296 1.02284 1.22678 0.96368 0.83189 1.00709 1.87991 1.21074 1.27698 1.95458 1.22542 0.81777 0.94471 1.00922 1.22341 0.96512 0.91848 0.85869 0.93152 1.22225 1.01023 1.01476 0.96848 1.86061 1.52209 1.46225 1.38839 1.18218 0.99591 0.87397 1.07896 1.17978 0.92160 0.89762 0.90518 1.19534 1.04366 1.05051 1.18949 0.90899 1.26643 1.00252 0.95029 0.95468 1.69880 1.28553 1.15190 1.29810 0.85376 0.78183 0.79116 0.78262 1.18534 1.18722 1.18664 1.20937 1.00332 0.98755 1.02402 1.20535 0.96697 0.95913 0.96493 1.20625 1.06964 0.92460 1.13583 1.19305 0.93537 0.83531 0.95539 1.86029 1.50692 1.25242 1.63297 1.23165 0.87573 1.03964 0.92298 0.92484 0.88525 0.93219 0.91957 0.93148 0.89975 0.93111 0.93101 0.92508 0.91567 0.89818 0.87287 0.86311 0.85324 0.92730 0.86465 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 10.28 71.98 0.74 -2.59 16 2 C 0.05 1.21 6.66 71.98 0.48 1.69 16 3 O -0.40 -14.55 9.43 -144.35 -1.36 -15.91 16 4 C 0.08 2.75 5.81 71.98 0.42 3.17 16 5 C 0.09 3.90 3.19 30.60 0.10 4.00 16 6 H 0.05 2.21 7.91 -2.39 -0.02 2.19 16 7 C -0.16 -6.78 8.20 71.98 0.59 -6.19 16 8 O -0.32 -16.29 8.83 -70.60 -0.62 -16.91 16 9 C -0.09 -4.55 5.61 23.15 0.13 -4.42 16 10 C 0.10 5.49 5.56 -21.21 -0.12 5.37 16 11 C -0.45 -24.52 5.84 23.40 0.14 -24.39 16 12 H 0.07 4.11 7.16 -2.91 -0.02 4.09 16 13 C 0.04 2.14 5.14 85.24 0.44 2.58 16 14 N -0.81 -41.13 10.97 21.83 0.24 -40.90 16 15 Si 0.97 38.69 29.59 68.60 2.03 40.72 16 16 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 17 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 18 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 19 C -0.20 -10.79 8.63 22.48 0.19 -10.60 16 20 C -0.08 -3.62 9.96 21.99 0.22 -3.40 16 21 C -0.32 -14.03 9.05 22.51 0.20 -13.82 16 22 C 0.13 6.05 6.69 22.54 0.15 6.20 16 23 O -0.34 -14.24 10.28 -79.76 -0.82 -15.06 16 24 C 0.02 0.72 9.81 113.37 1.11 1.83 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.21 8.14 -2.38 -0.02 1.20 16 30 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.05 2.25 7.56 -2.38 -0.02 2.24 16 33 H 0.06 2.79 5.75 -2.39 -0.01 2.77 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 36 H 0.11 5.89 6.18 -2.91 -0.02 5.87 16 37 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 38 H 0.13 4.76 6.27 -2.91 -0.02 4.74 16 39 H 0.05 1.50 7.67 -2.39 -0.02 1.48 16 40 H 0.12 2.58 8.14 -2.38 -0.02 2.56 16 41 H 0.05 1.50 7.65 -2.39 -0.02 1.48 16 Total: -1.00 -64.74 336.63 5.27 -59.47 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 1.01 Total: 29.17 kcal Atomic # 6 Polarization: -45.37 SS G_CDS: 4.79 Total: -40.58 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.24 Total: -40.90 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -2.80 Total: -47.88 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -64.74 5.27 -59.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.796 kcal (2) G-P(sol) polarization free energy of solvation -64.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds