Wall clock time and date at job start Tue Mar 31 2020 01:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.46804 * 2 1 4 4 C 1.42909 * 113.99809 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47070 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.46955 * 175.00003 * 5 4 3 7 7 C 1.53003 * 109.46828 * 55.00003 * 5 4 3 8 8 O 1.42899 * 109.46932 * 295.00073 * 5 4 3 9 9 C 1.35739 * 116.99960 * 209.99530 * 8 5 4 10 10 C 1.41200 * 120.28054 * 90.00340 * 9 8 5 11 11 C 1.41181 * 120.26414 * 0.02562 * 10 9 8 12 12 H 1.07994 * 120.00081 * 330.02305 * 11 10 9 13 13 C 1.39924 * 119.99717 * 150.02055 * 11 10 9 14 14 N 1.30865 * 119.99784 * 161.85538 * 13 11 10 15 15 Si 1.86802 * 120.00042 * 341.85722 * 13 11 10 16 16 H 1.48504 * 109.47158 * 95.40422 * 15 13 11 17 17 H 1.48498 * 109.46894 * 215.40222 * 15 13 11 18 18 H 1.48505 * 109.47096 * 335.40247 * 15 13 11 19 19 C 1.40770 * 119.47145 * 180.02562 * 10 9 8 20 20 C 1.36493 * 120.02271 * 0.02562 * 19 10 9 21 21 C 1.38779 * 120.57793 * 359.97438 * 20 19 10 22 22 C 1.38698 * 120.53722 * 0.25619 * 21 20 19 23 23 O 1.36018 * 120.02216 * 179.72213 * 22 21 20 24 24 C 1.42895 * 116.99436 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47114 * 59.99885 * 1 2 3 26 26 H 1.09005 * 109.46877 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47095 * 299.99357 * 1 2 3 28 28 H 1.09003 * 109.47263 * 240.00286 * 2 1 3 29 29 H 1.09003 * 109.47308 * 119.99788 * 2 1 3 30 30 H 1.08994 * 109.46764 * 60.00347 * 4 3 2 31 31 H 1.09000 * 109.47320 * 299.99930 * 4 3 2 32 32 H 1.09000 * 109.47238 * 60.00073 * 7 5 4 33 33 H 1.08998 * 109.46749 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.46979 * 299.99632 * 7 5 4 35 35 H 0.97011 * 120.00097 * 179.97438 * 14 13 11 36 36 H 1.07993 * 119.98989 * 180.02562 * 19 10 9 37 37 H 1.07994 * 119.71196 * 180.02562 * 20 19 10 38 38 H 1.08004 * 119.72661 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47234 * 299.99906 * 24 23 22 40 40 H 1.09000 * 109.47462 * 60.00395 * 24 23 22 41 41 H 1.09008 * 109.47124 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9385 0.0012 6 1 4.9081 3.0255 0.0912 7 6 3.1569 3.6442 1.1828 8 8 3.3985 3.5458 -1.2199 9 6 4.1410 4.5826 -1.6849 10 6 5.2242 4.3467 -2.5594 11 6 5.5436 3.0304 -2.9576 12 1 5.3400 2.2016 -2.2958 13 6 6.1239 2.7996 -4.2097 14 7 6.7398 1.6696 -4.4472 15 14 6.0195 4.1045 -5.5423 16 1 7.2548 4.9287 -5.5259 17 1 5.8795 3.4488 -6.8673 18 1 4.8413 4.9735 -5.2930 19 6 5.9832 5.4344 -3.0310 20 6 5.6704 6.7049 -2.6424 21 6 4.6061 6.9385 -1.7830 22 6 3.8455 5.8839 -1.3003 23 8 2.8081 6.1244 -0.4541 24 6 2.5584 7.4873 -0.1050 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8339 0.9766 -0.8892 31 1 3.8333 0.9768 0.8908 32 1 3.4825 3.1809 2.1142 33 1 3.4383 4.6972 1.1835 34 1 2.0741 3.5571 1.0927 35 1 7.1418 1.5094 -5.3154 36 1 6.8133 5.2636 -3.7004 37 1 6.2558 7.5358 -3.0076 38 1 4.3710 7.9494 -1.4841 39 1 3.4385 7.9041 0.3847 40 1 2.3393 8.0591 -1.0068 41 1 1.7070 7.5384 0.5738 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225842425.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:29 Heat of formation + Delta-G solvation = -109.452152 kcal Electronic energy + Delta-G solvation = -22872.780637 eV Core-core repulsion = 19525.385953 eV Total energy + Delta-G solvation = -3347.394684 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.35059 -37.95750 -36.96010 -35.92731 -33.50594 -32.10673 -30.32982 -29.98614 -28.57867 -26.59110 -25.89210 -24.89321 -22.53282 -21.48795 -21.08222 -19.99652 -17.98120 -17.11600 -16.19241 -15.84663 -15.62183 -15.43434 -15.23858 -14.85174 -14.57427 -13.94543 -13.80835 -13.18526 -12.90334 -12.79036 -12.55292 -12.38879 -12.15488 -12.00592 -11.73895 -11.51679 -11.33935 -11.20633 -11.03238 -10.81897 -10.68924 -10.63412 -10.24358 -10.14348 -9.82199 -9.66550 -9.29257 -9.18003 -8.62056 -7.60960 -7.07484 -7.02322 -4.54081 2.41687 2.63231 3.08823 3.19209 3.32389 3.95600 4.08089 4.09238 4.35836 4.74496 5.23058 5.31892 5.38036 5.53053 5.54226 5.59461 5.62543 5.70316 5.78482 5.80424 5.88634 5.94159 6.04028 6.06558 6.11611 6.25298 6.29202 6.36441 6.42332 6.63079 6.65361 6.80099 6.95818 7.10975 7.39573 7.51917 7.62240 7.63915 7.76429 8.24119 8.24855 8.45117 8.69006 9.07368 9.97786 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.007543 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.510384 B = 3710.939150 C = 5433.949635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.374 6.374 4 C 0.069 3.931 5 C 0.089 3.911 6 H 0.066 0.934 7 C -0.161 4.161 8 O -0.290 6.290 9 C -0.045 4.045 10 C 0.101 3.899 11 C -0.420 4.420 12 H 0.094 0.906 13 C 0.085 3.915 14 N -0.800 5.800 15 Si 0.913 3.087 16 H -0.270 1.270 17 H -0.290 1.290 18 H -0.242 1.242 19 C -0.252 4.252 20 C -0.049 4.049 21 C -0.322 4.322 22 C 0.145 3.855 23 O -0.312 6.312 24 C 0.032 3.968 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.287 0.713 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.381 1.801 6.822 8.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.293 6.293 4 C -0.007 4.007 5 C 0.033 3.967 6 H 0.084 0.916 7 C -0.219 4.219 8 O -0.206 6.206 9 C -0.090 4.090 10 C 0.097 3.903 11 C -0.447 4.447 12 H 0.112 0.888 13 C -0.135 4.135 14 N -0.423 5.423 15 Si 0.739 3.261 16 H -0.196 1.196 17 H -0.217 1.217 18 H -0.165 1.165 19 C -0.271 4.271 20 C -0.067 4.067 21 C -0.342 4.342 22 C 0.100 3.900 23 O -0.225 6.225 24 C -0.064 4.064 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.662 1.505 6.693 8.895 hybrid contribution 0.648 0.573 -0.548 1.024 sum -5.014 2.077 6.145 8.199 Atomic orbital electron populations 1.21706 0.94237 1.01566 1.03056 1.22393 0.95309 0.84923 0.99585 1.87974 1.21090 1.24936 1.95276 1.22637 0.81387 0.96561 1.00154 1.22235 0.97488 0.90462 0.86539 0.91567 1.22147 1.02376 1.00923 0.96412 1.86207 1.50575 1.46438 1.37349 1.18047 0.99242 0.83240 1.08516 1.17758 0.87993 0.93634 0.90915 1.19333 1.31111 0.93044 1.01219 0.88784 1.26193 0.90663 0.96382 1.00279 1.69699 1.23407 1.24731 1.24440 0.86283 0.81207 0.80611 0.77972 1.19576 1.21730 1.16483 1.20612 1.04126 0.92832 1.09566 1.20145 0.95166 0.95909 0.95499 1.20326 1.04673 0.96392 1.12828 1.19287 0.87052 0.93942 0.89765 1.86153 1.48284 1.26331 1.61761 1.22832 1.00626 0.83181 0.99760 0.91753 0.91676 0.92180 0.93557 0.94166 0.92167 0.93128 0.93574 0.91988 0.91530 0.90247 0.87825 0.88498 0.87907 0.93613 0.93503 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 37.16 0.38 -1.42 16 2 C 0.05 0.79 6.66 37.16 0.25 1.03 16 3 O -0.37 -6.85 9.43 -40.08 -0.38 -7.23 16 4 C 0.07 1.27 5.81 37.16 0.22 1.48 16 5 C 0.09 1.83 2.97 -26.73 -0.08 1.75 16 6 H 0.07 1.39 7.90 -51.93 -0.41 0.98 16 7 C -0.16 -2.92 8.89 37.16 0.33 -2.59 16 8 O -0.29 -7.08 8.81 -39.92 -0.35 -7.43 16 9 C -0.04 -1.11 5.60 -38.22 -0.21 -1.33 16 10 C 0.10 2.60 5.11 -106.70 -0.55 2.05 16 11 C -0.42 -11.29 9.19 -37.83 -0.35 -11.63 16 12 H 0.09 2.64 7.67 -52.49 -0.40 2.24 16 13 C 0.08 2.20 5.40 -17.33 -0.09 2.11 16 14 N -0.80 -20.82 13.93 55.55 0.77 -20.05 16 15 Si 0.91 20.78 24.52 -169.99 -4.17 16.62 16 16 H -0.27 -5.87 6.71 56.52 0.38 -5.49 16 17 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.24 -5.75 6.86 56.52 0.39 -5.36 16 19 C -0.25 -6.05 7.12 -39.25 -0.28 -6.33 16 20 C -0.05 -1.05 9.96 -40.01 -0.40 -1.45 16 21 C -0.32 -6.81 9.05 -39.21 -0.35 -7.16 16 22 C 0.14 3.28 6.54 -39.18 -0.26 3.03 16 23 O -0.31 -6.33 8.16 -34.33 -0.28 -6.61 16 24 C 0.03 0.47 9.81 101.05 0.99 1.47 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.17 6.25 -51.93 -0.32 0.84 16 34 H 0.07 1.25 7.56 -51.93 -0.39 0.86 16 35 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 36 H 0.10 2.44 4.74 -52.49 -0.25 2.19 16 37 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.10 1.87 6.27 -52.48 -0.33 1.54 16 39 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 40 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 41 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 LS Contribution 333.25 15.07 5.02 5.02 Total: -1.00 -29.23 333.25 -6.08 -35.32 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.30 Total: 3.36 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.40 Total: -19.00 kcal Atomic # 7 Polarization: -20.82 SS G_CDS: 0.77 Total: -20.05 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -1.01 Total: -21.27 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.17 Total: 16.62 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.23 -6.08 -35.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842425.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.136 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds