Wall clock time and date at job start Tue Mar 31 2020 01:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.46804 * 2 1 4 4 C 1.42909 * 113.99809 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47070 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.46955 * 175.00003 * 5 4 3 7 7 C 1.53003 * 109.46828 * 55.00003 * 5 4 3 8 8 O 1.42899 * 109.46932 * 295.00073 * 5 4 3 9 9 C 1.35739 * 116.99960 * 209.99530 * 8 5 4 10 10 C 1.41200 * 120.28054 * 90.00340 * 9 8 5 11 11 C 1.41181 * 120.26414 * 0.02562 * 10 9 8 12 12 H 1.07994 * 120.00081 * 330.02305 * 11 10 9 13 13 C 1.39924 * 119.99717 * 150.02055 * 11 10 9 14 14 N 1.30865 * 119.99784 * 161.85538 * 13 11 10 15 15 Si 1.86802 * 120.00042 * 341.85722 * 13 11 10 16 16 H 1.48504 * 109.47158 * 95.40422 * 15 13 11 17 17 H 1.48498 * 109.46894 * 215.40222 * 15 13 11 18 18 H 1.48505 * 109.47096 * 335.40247 * 15 13 11 19 19 C 1.40770 * 119.47145 * 180.02562 * 10 9 8 20 20 C 1.36493 * 120.02271 * 0.02562 * 19 10 9 21 21 C 1.38779 * 120.57793 * 359.97438 * 20 19 10 22 22 C 1.38698 * 120.53722 * 0.25619 * 21 20 19 23 23 O 1.36018 * 120.02216 * 179.72213 * 22 21 20 24 24 C 1.42895 * 116.99436 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47114 * 59.99885 * 1 2 3 26 26 H 1.09005 * 109.46877 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47095 * 299.99357 * 1 2 3 28 28 H 1.09003 * 109.47263 * 240.00286 * 2 1 3 29 29 H 1.09003 * 109.47308 * 119.99788 * 2 1 3 30 30 H 1.08994 * 109.46764 * 60.00347 * 4 3 2 31 31 H 1.09000 * 109.47320 * 299.99930 * 4 3 2 32 32 H 1.09000 * 109.47238 * 60.00073 * 7 5 4 33 33 H 1.08998 * 109.46749 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.46979 * 299.99632 * 7 5 4 35 35 H 0.97011 * 120.00097 * 179.97438 * 14 13 11 36 36 H 1.07993 * 119.98989 * 180.02562 * 19 10 9 37 37 H 1.07994 * 119.71196 * 180.02562 * 20 19 10 38 38 H 1.08004 * 119.72661 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47234 * 299.99906 * 24 23 22 40 40 H 1.09000 * 109.47462 * 60.00395 * 24 23 22 41 41 H 1.09008 * 109.47124 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9385 0.0012 6 1 4.9081 3.0255 0.0912 7 6 3.1569 3.6442 1.1828 8 8 3.3985 3.5458 -1.2199 9 6 4.1410 4.5826 -1.6849 10 6 5.2242 4.3467 -2.5594 11 6 5.5436 3.0304 -2.9576 12 1 5.3400 2.2016 -2.2958 13 6 6.1239 2.7996 -4.2097 14 7 6.7398 1.6696 -4.4472 15 14 6.0195 4.1045 -5.5423 16 1 7.2548 4.9287 -5.5259 17 1 5.8795 3.4488 -6.8673 18 1 4.8413 4.9735 -5.2930 19 6 5.9832 5.4344 -3.0310 20 6 5.6704 6.7049 -2.6424 21 6 4.6061 6.9385 -1.7830 22 6 3.8455 5.8839 -1.3003 23 8 2.8081 6.1244 -0.4541 24 6 2.5584 7.4873 -0.1050 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8339 0.9766 -0.8892 31 1 3.8333 0.9768 0.8908 32 1 3.4825 3.1809 2.1142 33 1 3.4383 4.6972 1.1835 34 1 2.0741 3.5571 1.0927 35 1 7.1418 1.5094 -5.3154 36 1 6.8133 5.2636 -3.7004 37 1 6.2558 7.5358 -3.0076 38 1 4.3710 7.9494 -1.4841 39 1 3.4385 7.9041 0.3847 40 1 2.3393 8.0591 -1.0068 41 1 1.7070 7.5384 0.5738 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225842425.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:28 Heat of formation + Delta-G solvation = -127.142625 kcal Electronic energy + Delta-G solvation = -22873.547754 eV Core-core repulsion = 19525.385953 eV Total energy + Delta-G solvation = -3348.161800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.04485 -39.44371 -38.52784 -37.62735 -35.38063 -33.55258 -31.95202 -31.46325 -30.21098 -28.04603 -27.35792 -26.68623 -23.65255 -23.20307 -22.81574 -21.66869 -19.74976 -18.79820 -17.81124 -17.33219 -17.15982 -17.08054 -16.76251 -16.52277 -15.99749 -15.59255 -15.35354 -14.78456 -14.47243 -14.22565 -14.18814 -13.87315 -13.62000 -13.44049 -13.18359 -13.10060 -12.81473 -12.70461 -12.46721 -12.33064 -12.22822 -12.06198 -11.83734 -11.79187 -11.54999 -11.41788 -11.10269 -10.53242 -10.36034 -9.44883 -8.94329 -8.78885 -6.51093 0.62313 0.83174 1.25667 1.39578 1.49467 2.12145 2.54018 2.61989 2.77452 3.00786 3.51595 4.01142 4.13135 4.18577 4.24531 4.31972 4.36420 4.43222 4.47633 4.48922 4.50003 4.52164 4.61142 4.72384 4.78871 4.83609 4.88700 4.93248 5.00465 5.04782 5.11833 5.26666 5.30458 5.47067 5.61020 5.73042 5.89463 5.93089 6.25447 6.29835 6.53818 6.67431 6.74453 7.29024 8.13258 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.007543 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.510384 B = 3710.939150 C = 5433.949635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 O -0.395 6.395 4 C 0.076 3.924 5 C 0.084 3.916 6 H 0.050 0.950 7 C -0.145 4.145 8 O -0.317 6.317 9 C -0.066 4.066 10 C 0.082 3.918 11 C -0.456 4.456 12 H 0.059 0.941 13 C 0.051 3.949 14 N -0.839 5.839 15 Si 0.964 3.036 16 H -0.249 1.249 17 H -0.278 1.278 18 H -0.259 1.259 19 C -0.267 4.267 20 C -0.048 4.048 21 C -0.305 4.305 22 C 0.139 3.861 23 O -0.327 6.327 24 C 0.020 3.980 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.296 0.704 36 H 0.105 0.895 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.149 4.209 7.841 10.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 O -0.315 6.315 4 C -0.001 4.001 5 C 0.028 3.972 6 H 0.068 0.932 7 C -0.202 4.202 8 O -0.234 6.234 9 C -0.111 4.111 10 C 0.079 3.921 11 C -0.485 4.485 12 H 0.077 0.923 13 C -0.165 4.165 14 N -0.464 5.464 15 Si 0.787 3.213 16 H -0.174 1.174 17 H -0.204 1.204 18 H -0.183 1.183 19 C -0.287 4.287 20 C -0.067 4.067 21 C -0.324 4.324 22 C 0.093 3.907 23 O -0.241 6.241 24 C -0.074 4.074 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.430 3.916 7.727 10.788 hybrid contribution 0.721 -0.051 -0.653 0.974 sum -5.709 3.865 7.074 9.878 Atomic orbital electron populations 1.21722 0.92409 1.03376 1.02550 1.22696 0.96819 0.83260 1.00396 1.87934 1.20616 1.27548 1.95425 1.22525 0.81946 0.95243 1.00383 1.22408 0.96905 0.91835 0.86093 0.93176 1.21996 1.01460 1.00346 0.96439 1.86108 1.51068 1.46943 1.39247 1.18371 0.99221 0.84619 1.08916 1.17971 0.88752 0.93736 0.91678 1.19247 1.34139 0.92987 1.02117 0.92262 1.26807 0.90196 0.98121 1.01388 1.69718 1.25041 1.26182 1.25464 0.85516 0.81066 0.78546 0.76142 1.17404 1.20426 1.18273 1.20752 1.04207 0.93519 1.10196 1.20592 0.95351 0.96027 0.94683 1.20821 1.03154 0.97726 1.10748 1.19359 0.87829 0.93424 0.90053 1.86136 1.47182 1.29835 1.60945 1.23231 1.02569 0.80605 1.00999 0.93224 0.88711 0.91664 0.94292 0.91766 0.94959 0.89792 0.90591 0.92711 0.92288 0.89386 0.87748 0.84462 0.84056 0.92076 0.92460 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 10.28 71.98 0.74 -2.58 16 2 C 0.04 1.26 6.66 71.98 0.48 1.74 16 3 O -0.40 -14.70 9.43 -144.35 -1.36 -16.06 16 4 C 0.08 2.87 5.81 71.98 0.42 3.29 16 5 C 0.08 3.54 2.97 30.60 0.09 3.63 16 6 H 0.05 2.23 7.90 -2.39 -0.02 2.21 16 7 C -0.15 -5.16 8.89 71.98 0.64 -4.52 16 8 O -0.32 -16.14 8.81 -70.56 -0.62 -16.76 16 9 C -0.07 -3.34 5.60 23.15 0.13 -3.22 16 10 C 0.08 4.35 5.11 -21.21 -0.11 4.24 16 11 C -0.46 -26.13 9.19 23.40 0.22 -25.91 16 12 H 0.06 3.66 7.67 -2.91 -0.02 3.64 16 13 C 0.05 2.74 5.40 85.25 0.46 3.20 16 14 N -0.84 -45.80 13.93 21.83 0.30 -45.50 16 15 Si 0.96 43.31 24.52 68.60 1.68 44.99 16 16 H -0.25 -10.25 6.71 99.48 0.67 -9.58 16 17 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 18 H -0.26 -12.19 6.86 99.48 0.68 -11.51 16 19 C -0.27 -12.67 7.12 22.48 0.16 -12.51 16 20 C -0.05 -1.95 9.96 21.99 0.22 -1.73 16 21 C -0.30 -11.85 9.05 22.51 0.20 -11.64 16 22 C 0.14 6.12 6.54 22.53 0.15 6.27 16 23 O -0.33 -12.63 8.16 -79.85 -0.65 -13.29 16 24 C 0.02 0.53 9.81 113.37 1.11 1.64 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.03 1.38 8.13 -2.39 -0.02 1.36 16 31 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.05 2.00 6.25 -2.39 -0.01 1.99 16 34 H 0.06 2.17 7.56 -2.39 -0.02 2.16 16 35 H 0.30 14.44 8.30 -92.70 -0.77 13.68 16 36 H 0.10 4.85 4.74 -2.91 -0.01 4.83 16 37 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 38 H 0.14 4.37 6.27 -2.91 -0.02 4.35 16 39 H 0.06 1.41 7.66 -2.39 -0.02 1.39 16 40 H 0.06 1.38 7.66 -2.39 -0.02 1.36 16 41 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -66.80 333.25 5.21 -61.59 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.95 Total: 23.11 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 4.91 Total: -38.10 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.30 Total: -45.50 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -2.63 Total: -46.10 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.68 Total: 44.99 kcal Total: -66.80 5.21 -61.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842425.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.553 kcal (2) G-P(sol) polarization free energy of solvation -66.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds