Wall clock time and date at job start Tue Mar 31 2020 01:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47059 * 2 1 4 4 H 1.08999 * 109.46670 * 57.04540 * 3 2 1 5 5 C 1.52996 * 109.46850 * 177.04428 * 3 2 1 6 6 O 1.42901 * 109.47496 * 55.00288 * 5 3 2 7 7 C 1.42901 * 113.99978 * 180.02562 * 6 5 3 8 8 O 1.42899 * 109.47083 * 297.04365 * 3 2 1 9 9 C 1.35744 * 116.99670 * 156.11667 * 8 3 2 10 10 C 1.41196 * 120.28345 * 276.84006 * 9 8 3 11 11 C 1.41185 * 120.26551 * 0.02562 * 10 9 8 12 12 H 1.07999 * 119.99756 * 327.15221 * 11 10 9 13 13 C 1.39922 * 120.00097 * 147.16189 * 11 10 9 14 14 N 1.30871 * 120.00067 * 348.93851 * 13 11 10 15 15 Si 1.86803 * 119.99898 * 168.94342 * 13 11 10 16 16 H 1.48501 * 109.47026 * 59.99883 * 15 13 11 17 17 H 1.48500 * 109.46661 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.46928 * 299.99657 * 15 13 11 19 19 C 1.40772 * 119.46935 * 179.75268 * 10 9 8 20 20 C 1.36490 * 120.02230 * 0.54801 * 19 10 9 21 21 C 1.38771 * 120.58183 * 359.69977 * 20 19 10 22 22 C 1.38712 * 120.53590 * 0.02562 * 21 20 19 23 23 O 1.36000 * 120.01950 * 180.02562 * 22 21 20 24 24 C 1.42907 * 117.00405 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46991 * 65.88555 * 1 2 3 26 26 H 1.08997 * 109.47112 * 185.88084 * 1 2 3 27 27 H 1.08991 * 109.47251 * 305.88189 * 1 2 3 28 28 H 1.09003 * 109.46620 * 240.00635 * 2 1 3 29 29 H 1.08999 * 109.46887 * 120.00280 * 2 1 3 30 30 H 1.09000 * 109.47410 * 294.99991 * 5 3 2 31 31 H 1.09007 * 109.46859 * 175.00676 * 5 3 2 32 32 H 1.08996 * 109.46660 * 299.99629 * 7 6 5 33 33 H 1.09000 * 109.47199 * 59.99743 * 7 6 5 34 34 H 1.09003 * 109.46873 * 180.02562 * 7 6 5 35 35 H 0.96992 * 120.00338 * 180.02562 * 14 13 11 36 36 H 1.08004 * 119.98620 * 180.24609 * 19 10 9 37 37 H 1.07999 * 119.70729 * 179.72571 * 20 19 10 38 38 H 1.07999 * 119.72976 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47415 * 180.02562 * 24 23 22 40 40 H 1.08999 * 109.46691 * 300.00069 * 24 23 22 41 41 H 1.09001 * 109.46929 * 59.99932 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6340 1.9713 0.8623 5 6 3.5682 1.4431 0.0744 6 8 4.0973 0.6517 -0.9914 7 6 5.5246 0.5856 -1.0129 8 8 1.6213 2.0958 -1.2000 9 6 1.5350 3.4501 -1.1664 10 6 0.3793 4.0774 -0.6523 11 6 -0.6962 3.3012 -0.1684 12 1 -0.9191 2.3461 -0.6206 13 6 -1.4733 3.7694 0.8968 14 7 -1.0811 4.8116 1.5843 15 14 -3.0704 2.9067 1.3376 16 1 -2.7875 1.4932 1.6941 17 1 -3.7000 3.5921 2.4948 18 1 -3.9930 2.9489 0.1748 19 6 0.3103 5.4831 -0.6209 20 6 1.3505 6.2287 -1.0951 21 6 2.4850 5.6137 -1.6055 22 6 2.5805 4.2304 -1.6427 23 8 3.6974 3.6387 -2.1447 24 6 4.7330 4.5028 -2.6169 25 1 -0.3633 0.4199 -0.9380 26 1 -0.3633 -1.0222 0.1053 27 1 -0.3633 0.6023 0.8326 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.8857 1.0250 1.0296 31 1 3.9359 2.4654 -0.0149 32 1 5.9332 1.5899 -1.1245 33 1 5.8823 0.1494 -0.0801 34 1 5.8471 -0.0327 -1.8507 35 1 -1.6196 5.1360 2.3229 36 1 -0.5682 5.9717 -0.2257 37 1 1.2903 7.3068 -1.0726 38 1 3.3001 6.2171 -1.9768 39 1 5.5639 3.9041 -2.9900 40 1 4.3458 5.1279 -3.4215 41 1 5.0790 5.1357 -1.7996 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225842762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:20 Heat of formation + Delta-G solvation = -110.466720 kcal Electronic energy + Delta-G solvation = -23512.526023 eV Core-core repulsion = 20165.087344 eV Total energy + Delta-G solvation = -3347.438679 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.19834 -37.79985 -36.75093 -35.65687 -33.46265 -32.79829 -29.51223 -28.72060 -28.31080 -26.42368 -25.76413 -25.04416 -22.99656 -20.92955 -20.81949 -19.83583 -17.84305 -16.79641 -15.89041 -15.64796 -15.50251 -15.20996 -14.91749 -14.74691 -14.52139 -13.95296 -13.54264 -13.36692 -13.07313 -12.77462 -12.47347 -12.02546 -11.98052 -11.63541 -11.41488 -11.21997 -11.15100 -11.05651 -10.93289 -10.64400 -10.52801 -10.42681 -10.15567 -9.91951 -9.83616 -9.46471 -9.21360 -9.11825 -8.53639 -7.33174 -6.90593 -6.71343 -4.43464 2.64844 2.90506 3.04864 3.08650 3.17250 3.89974 4.23722 4.32469 4.55695 4.93837 5.43147 5.54416 5.59732 5.61870 5.64022 5.71820 5.75024 5.83288 5.86321 5.91365 5.97905 6.14994 6.16973 6.22611 6.40593 6.48696 6.57450 6.71591 6.82526 6.85824 6.97928 7.06911 7.16164 7.21594 7.61115 7.67631 7.74620 7.95453 8.02284 8.43549 8.44179 8.73396 8.82631 9.24119 10.15831 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.015488 B = 0.008090 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.391664 B = 3460.435524 C = 4952.635178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C 0.096 3.904 4 H 0.074 0.926 5 C 0.044 3.956 6 O -0.369 6.369 7 C 0.035 3.965 8 O -0.291 6.291 9 C -0.055 4.055 10 C 0.125 3.875 11 C -0.445 4.445 12 H 0.091 0.909 13 C 0.075 3.925 14 N -0.797 5.797 15 Si 0.905 3.095 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.262 1.262 19 C -0.170 4.170 20 C -0.081 4.081 21 C -0.313 4.313 22 C 0.132 3.868 23 O -0.310 6.310 24 C 0.033 3.967 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.029 0.971 34 H 0.077 0.923 35 H 0.281 0.719 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.630 -3.747 -0.638 7.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C 0.039 3.961 4 H 0.092 0.908 5 C -0.033 4.033 6 O -0.287 6.287 7 C -0.062 4.062 8 O -0.207 6.207 9 C -0.100 4.100 10 C 0.122 3.878 11 C -0.475 4.475 12 H 0.109 0.891 13 C -0.143 4.143 14 N -0.423 5.423 15 Si 0.729 3.271 16 H -0.186 1.186 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.189 4.189 20 C -0.100 4.100 21 C -0.333 4.333 22 C 0.088 3.912 23 O -0.224 6.224 24 C -0.063 4.063 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.436 -4.020 -0.725 7.623 hybrid contribution -0.147 0.471 0.761 0.907 sum 6.289 -3.549 0.036 7.221 Atomic orbital electron populations 1.21789 0.95419 0.99871 1.03375 1.21383 0.96378 0.95034 1.01612 1.22265 0.89507 0.93796 0.90534 0.90776 1.23185 0.96603 0.94912 0.88550 1.87957 1.18684 1.70917 1.51144 1.22609 0.82982 1.00248 1.00385 1.86141 1.86278 1.15960 1.32338 1.18007 0.93099 0.82295 1.16639 1.17680 0.90225 0.92078 0.87789 1.19574 1.09435 1.05244 1.13204 0.89087 1.25918 0.98466 0.94424 0.95444 1.69813 1.36323 1.20837 1.15283 0.86405 0.81552 0.80432 0.78693 1.18590 1.20423 1.18683 1.20891 0.99237 0.93683 1.05117 1.20226 0.93902 0.97593 0.98252 1.20337 1.01999 0.92196 1.18781 1.19178 0.85079 0.91293 0.95668 1.86181 1.25454 1.34549 1.76217 1.22776 0.90168 0.95057 0.98274 0.91565 0.94227 0.92314 0.91113 0.92254 0.94351 0.92844 0.94625 0.95243 0.90468 0.90808 0.86518 0.89117 0.88523 0.90034 0.93685 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.92 37.16 0.33 -2.34 16 2 C -0.11 -1.93 5.41 -26.73 -0.14 -2.07 16 3 C 0.10 1.99 2.37 -26.73 -0.06 1.93 16 4 H 0.07 1.67 7.86 -51.93 -0.41 1.26 16 5 C 0.04 0.84 5.50 37.16 0.20 1.04 16 6 O -0.37 -6.84 9.85 -40.08 -0.39 -7.24 16 7 C 0.03 0.49 11.01 101.05 1.11 1.60 16 8 O -0.29 -7.01 8.47 -39.94 -0.34 -7.35 16 9 C -0.05 -1.38 5.50 -38.22 -0.21 -1.59 16 10 C 0.13 3.28 5.50 -106.70 -0.59 2.69 16 11 C -0.45 -11.31 8.32 -37.83 -0.31 -11.63 16 12 H 0.09 2.28 5.72 -52.49 -0.30 1.98 16 13 C 0.08 1.81 5.22 -17.33 -0.09 1.72 16 14 N -0.80 -19.84 11.13 55.55 0.62 -19.22 16 15 Si 0.90 18.28 29.57 -169.99 -5.03 13.25 16 16 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 17 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 19 C -0.17 -4.30 8.58 -39.26 -0.34 -4.64 16 20 C -0.08 -1.87 9.96 -40.02 -0.40 -2.27 16 21 C -0.31 -7.02 9.05 -39.21 -0.35 -7.37 16 22 C 0.13 3.12 6.28 -39.17 -0.25 2.88 16 23 O -0.31 -6.60 9.07 -34.28 -0.31 -6.91 16 24 C 0.03 0.53 9.81 101.05 0.99 1.52 16 25 H 0.07 1.31 6.90 -51.93 -0.36 0.95 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 28 H 0.07 1.30 7.66 -51.93 -0.40 0.91 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 1.09 6.60 -51.93 -0.34 0.75 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.28 6.43 8.30 -40.82 -0.34 6.10 16 36 H 0.12 3.02 6.53 -52.48 -0.34 2.68 16 37 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 38 H 0.10 1.90 6.27 -52.49 -0.33 1.57 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.69 7.66 -51.93 -0.40 0.29 16 41 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 LS Contribution 335.11 15.07 5.05 5.05 Total: -1.00 -28.08 335.11 -6.72 -34.80 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.21 Total: 6.14 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -0.11 Total: -18.52 kcal Atomic # 7 Polarization: -19.84 SS G_CDS: 0.62 Total: -19.22 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -1.04 Total: -21.50 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.08 -6.72 -34.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.667 kcal (2) G-P(sol) polarization free energy of solvation -28.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds